BAC Information

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BAC

Clone NameB6Ng01-157N03
Chromosome15 (Build37)6 (Build37)
Map Location 62,946,419 - 62,946,57559,508,190 - 59,508,706
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePvt1, LOC100040584, H2afy3, LOC100040430, Tsg101-ps
Downstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N03.bB6Ng01-157N03.g
ACCDH951947DH951948
length1571,134
definitionDH951947|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N03, 5' end.DH951948|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,946,419 - 62,946,575)(59,508,190 - 59,508,706)
sequence
attgttaatgaagaaaaatgaaattgactgtttgcattagccttttatct
tacaatcttgtaatgtcacttgcaaacaaggatagttttgcttctttatg
ttaaaataaccccctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag
agagaga
gaattctcacctgaggaatactgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaaat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctgaaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatactccactat
gttcgtagcagccttatttataatagtcagaagctggaaagaacccagat
gcccctcaacagcagaatggatacagaaaatgtgatacatttacacaatg
tagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtaaggtaacccaatcacaaa
aaaactcacacaatatgtactcactgataagtggatattagccccaatcc
taggatacccaagatataagattcaatttgctaaacatatgaaactcaag
aagaatgaagaccaaagtgtggacactttgccccttcttagacttgggaa
caaaacacccatggaaggagttacagagacacagtttggagctgagacga
aaggatggaccatctagaaacccgccatatccggggatccatcccataat
cagcttccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctctctcttgtgagactatgccggggcctagcaaa
cacagaagtggatgttcacagtcagctatggatgcatcacagggcctcaa
tggagagctagagaagtaaccaggagctaaagggatctgcaccttatagg
tgacacatatgaactacccagtactctcaaagctcatgttctctagctgc
atatgtatcagaagtgcatgtcgcattatggaaggaaggccaatgggtat
gaacttatctgcttaagtcaggaatgccaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_62946419_62946575
seq2: B6Ng01-157N03.b_53_209 (reverse)

seq1  TCTCTCTCTCACACACACACACACACACACACACACACACAGAGGGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCACACACACACACACACACACACACACACACAGAGGGGGTT  50

seq1  ATTTTAACATAAAGAAGCAAAACTATCCTTGTTTGCAAGTGACATTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACATAAAGAAGCAAAACTATCCTTGTTTGCAAGTGACATTACAA  100

seq1  GATTGTAAGATAAAAGGCTAATGCAAACAGTCAATTTCATTTTTCTTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTAAGATAAAAGGCTAATGCAAACAGTCAATTTCATTTTTCTTCAT  150

seq1  TAACAAT  157
      |||||||
seq2  TAACAAT  157

seq1: chr6_59508190_59508706
seq2: B6Ng01-157N03.g_937_1202 (reverse)

seq1  TGCCTTGGCATTCCTGAGTTCTAGAATTACCAGAGCATACCTCGGCACCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTAATTAATTTTTTTTAAGTTTTTATTTTTTTTTTTGCCTAGTTAAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTTTTTTTTTAGATTTCTCCTTTTTTTAAAAAAAATTAGGTATTTTCC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCAATTACAATTCCAATGCTATCCCAAAAGTCCCCCATACCCACCCCCAC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATCCCCTACCCACCCACTCCCTCTTTTTGGCCCTGGCGTTCCCCTGAAC  250
                                    ||| |||| ||  |||| ||
seq2  -----------------------------TGCCTTGGCATT--CCTG-AC  18

seq1  TGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGG  300
      |   ||| || |||||    |  || || ||||| || ||||| | ||| 
seq2  TTAAGCAGAT-AAGTT---CATACCCATTGGCCT-TCCTTCCA-TAATG-  61

seq1  CTGACTAGGCCATCTTTTGATACATATGCAGCTAGAG-ACAAGAGCTCCG  349
        ||| | ||   ||| |||||||||||||||||||| ||| |||||  |
seq2  -CGAC-ATGC--ACTTCTGATACATATGCAGCTAGAGAACATGAGCTTTG  107

seq1  -GGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCC  398
       | ||||||| |||||||||    |||  |||||||| || ||||| |||
seq2  AGAGTACTGGGTAGTTCATA----TGTGTCACCTATAAGG-TGCAGATCC  152

seq1  CTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCGTGTGA  448
      |||||||||| ||| ||| |||||||||| ||||||| | |||| |||||
seq2  CTTTAGCTCC-TGGTTAC-TTCTCTAGCT-CTCCATT-GAGGCCCTGTGA  198

seq1  CCCATCCAATACCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  498
        ||||| ||| |||||||||| |||||||||||||||||||||||||||
seq2  TGCATCC-ATAGCTGACTGTGAACATCCACTTCTGTGTTTGCTAGGCCCC  247

seq1  AGCATAGTCTCACAAGAGA  517
       ||||||||||||||||||
seq2  GGCATAGTCTCACAAGAGA  266