BAC Information

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BAC

Clone NameB6Ng01-159B12
Chromosome15 (Build37)
Map Location 71,742,777 - 71,898,858
singlet/doubletdoublet
Overlap geneCol22a1
Upstream geneLOC383051, 1700010C24Rik, LOC100040847
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B12.bB6Ng01-159B12.g
ACCDH952861DH952862
length1,1461,064
definitionDH952861|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B12, 5' end.DH952862|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,742,777 - 71,743,935)(71,897,797 - 71,898,858)
sequence
gaattctttaaaatttttaaagattgtccactgcctacttattcgcttga
ggcatttaaagtgggagtttggatttgttcttcctagaatctaaccttct
actctccctgtcattaccctttttaatggttctcacaggagactacttaa
acctgaaatctcccatgactgattatctcttcagttgactgtgatacatt
cagagccttcctgggtggctttgggagaactgtgctccatctgaccttgt
aaatccaaccattccaactaagccttggtccaaagcccagatgaccaact
aatcttggaacccaatgacctttgctcttcagtttctgattcctaaactc
atggcaccctgtgattacccaccttggagccaggaaggcctggtggtcca
ttcagcccatcctttccaggtgtcccctggtccaagagagaaaagaaaca
aaacgaaaacaaagacatgtttagggaagatctgagggggaacgccaact
aagagatgactctacagctagactgtggtgcatggtctcacccactttcc
agctattttgcttttcaagaagtacctgcctctgccagccaggatttcct
tacatcctgataggactacacagtgactactacccttctagtctgtaccc
tggctcatttattatacatgaagatgaatgaagggggagagacgtggctc
tattcctaatcttggcctcaagaggccccagagacagtaccatccacact
gatcctgaagtccttcactgaatctcttggcttcatgtgtcttccttcca
accagtgtcttccttcctcttgtccttcaaagatgctattctccggtctc
catcgtggctgtcactctagccttgtatttctgaggagtttcatagtgtg
tctttctattcaaggtgcattctctatcccaatccttgacttttttatcc
tagctgctaggtgcagatgagagacatgaatcccaggatggagtgcttct
gagtaagaagatgtggatggggacctgaagagccttctggcttcaactgt
gagctcttgcactaaacctagatgattgtcacgccattcaaggtcacgtt
cctctatagaacaggtggtaaccgctccctccagacaacttcaggg
gaattcaattaagtaaagttgtatttatcccacagtcgtatgtttcagtt
gatgttaaatttctagacttttaatttatatttcaggagtacaagtgaga
atcgaaaaaaacaaaagaaaacaaaatccccccaaaagcttcatgatcct
tcccaacaggatgttggtgagagctctgacgatcaggattggtaggattt
gatccaatgacttggggaaaataatgggcagatgtgaaacaagtgaaatt
tctatcatccagtattatattataatcccaaacctttttgatcacttcat
attgagtggtttaagttcatatttagtgttttcctgtggatgcccgactc
gccagcaaggaagacaccacaacaggattcttctgcacacgtttattaga
agagcttgatagcgaaggcgaaagaccccgagccccaaaacttgcgctgc
ttatataggcctaggagtggtgtgtctatatctaattggttgtgccttca
gtgtctcatttacattccatgggatgggctgtgacttggcatgaaaccct
tatgcacatgtgcacattggttgtttatctgaacttacgggtggtggcca
gcggtagccagcaccatcttgtaatggcatatgtggcttcccacatctcc
ccccttttttattattatggcctaatccaacgatctagtcgctagcctct
tcagcttgcaaggatcaagtaggatcttgtttttggtagaccatgattac
cctatcatgtgcaatgggcatagcctcagcaatgtgcaaagggctgatca
aggaaatcgagtcttactcatcccagtgcaatgggtacacagacctgtgg
ggtgctagagctaaggactcaaatgcctattatttattgtagcatgggat
accaatacttcagagcaggccctttgttcaatggccatgagtgcttgggt
gatgaccaccttgtcacgtttctgttgagatctgaacttgcaaacaacca
aagcatggatactatccacagcatatggcatcgctaaaaagaacacctct
cacccacctcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_71742777_71743935
seq2: B6Ng01-159B12.b_47_1192

seq1  GAATTCTTTAAAATTTTTAAAGATTGTCCACTGCCTACTTATTCGCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTTTTAAAGATTGTCCACTGCCTACTTATTCGCTTGA  50

seq1  GGCATTTAAAGTGGGAGTTTGGATTTGTTCTTCCTAGAATCTAACCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAAAGTGGGAGTTTGGATTTGTTCTTCCTAGAATCTAACCTTCT  100

seq1  ACTCTCCCTGTCATTACCCTTTTTAATGGTTCTCACAGGAGACTACTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCTGTCATTACCCTTTTTAATGGTTCTCACAGGAGACTACTTAA  150

seq1  ACCTGAAATCTCCCATGACTGATTATCTCTTCAGTTGACTGTGATACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAATCTCCCATGACTGATTATCTCTTCAGTTGACTGTGATACATT  200

seq1  CAGAGCCTTCCTGGGTGGCTTTGGGAGAACTGTGCTCCATCTGACCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTTCCTGGGTGGCTTTGGGAGAACTGTGCTCCATCTGACCTTGT  250

seq1  AAATCCAACCATTCCAACTAAGCCTTGGTCCAAAGCCCAGATGACCAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAACCATTCCAACTAAGCCTTGGTCCAAAGCCCAGATGACCAACT  300

seq1  AATCTTGGAACCCAATGACCTTTGCTCTTCAGTTTCTGATTCCTAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGAACCCAATGACCTTTGCTCTTCAGTTTCTGATTCCTAAACTC  350

seq1  ATGGCACCCTGTGATTACCCACCTTGGAGCCAGGAAGGCCTGGTGGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACCCTGTGATTACCCACCTTGGAGCCAGGAAGGCCTGGTGGTCCA  400

seq1  TTCAGCCCATCCTTTCCAGGTGTCCCCTGGTCCAAGAGAGAAAAGAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCATCCTTTCCAGGTGTCCCCTGGTCCAAGAGAGAAAAGAAACA  450

seq1  AAACGAAAACAAAGACATGTTTAGGGAAGATCTGAGGGGGAACGCCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAAACAAAGACATGTTTAGGGAAGATCTGAGGGGGAACGCCAACT  500

seq1  AAGAGATGACTCTACAGCTAGACTGTGGTGCATGGTCTCACCCACTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGACTCTACAGCTAGACTGTGGTGCATGGTCTCACCCACTTTCC  550

seq1  AGCTATTTTGCTTTTCAAGAAGTACCTGCCTCTGCCAGCCAGGATTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTTGCTTTTCAAGAAGTACCTGCCTCTGCCAGCCAGGATTTCCT  600

seq1  TACATCCTGATAGGACTACACAGTGACTACTACCCTTCTAGTCTGTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCTGATAGGACTACACAGTGACTACTACCCTTCTAGTCTGTACCC  650

seq1  TGGCTCATTTATTATACATGAAGATGAATGAAGGGGGAGAGACGTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTTATTATACATGAAGATGAATGAAGGGGGAGAGACGTGGCTC  700

seq1  TATTCCTAATCTTGGCCTCAAGAGGCCCCAGAGACAGTACCATCCACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTAATCTTGGCCTCAAGAGGCCCCAGAGACAGTACCATCCACACT  750

seq1  GATCCTGAAGTCCTTCACTGAATCTCTTGGCTTCATGTGTCTTCCTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAAGTCCTTCACTGAATCTCTTGGCTTCATGTGTCTTCCTTCCA  800

seq1  ACCAGTGTCTTCCTTCCTCTTGTCCTTCAAAGATGCTATTCTCCGGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTCTTCCTTCCTCTTGTCCTTCAAAGATGCTATTCTCCGGTCTC  850

seq1  CATCGTGGCTGTCACCCCAGCCTTGTATTTCTGAGGAGTTTCATAGTGTG  900
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  CATCGTGGCTGTCACTCTAGCCTTGTATTTCTGAGGAGTTTCATAGTGTG  900

seq1  CCTTCTAATTCAAGGTGCATTCTCTACCCCAA-CCTTGAC-ATTCTATCC  948
       |||   ||||||||||||||||||| ||||| |||||||  || |||||
seq2  TCTTTCTATTCAAGGTGCATTCTCTATCCCAATCCTTGACTTTTTTATCC  950

seq1  CAGCTGCTAGGTGCAGATGAAGAGACAATGAATCCCAGGATGGAGTGGCT  998
       |||||||||||||||||| |||||| ||||||||||||||||||| |||
seq2  TAGCTGCTAGGTGCAGATG-AGAGAC-ATGAATCCCAGGATGGAGT-GCT  997

seq1  TCTGAGGTCACAGAGATGTGGATGGGGACCTGAAGAGCCTTCTGGCTACA  1048
      ||||| || | | |||||||||||||||||||||||||||||||||| ||
seq2  TCTGA-GTAAGA-AGATGTGGATGGGGACCTGAAGAGCCTTCTGGCTTCA  1045

seq1  ACTGTGAGCCCCTGCACTAAACCTAAGATGTATTGTCACGCCCATTTCAC  1098
      ||||||||| | |||||||||||| ||||| ||||||||| |||||   |
seq2  ACTGTGAGCTCTTGCACTAAACCT-AGATG-ATTGTCACG-CCATT---C  1089

seq1  AGGGCCACGTTCTCTCATTAGAACAGGTGGAAAACAGGCTCCCTCACAGA  1148
      | || ||||||| |||  |||||||||||| || |  |||||||| ||||
seq2  AAGGTCACGTTC-CTCTATAGAACAGGTGGTAACC--GCTCCCTC-CAGA  1135

seq1  CAACCTCAGGG  1159
      |||| ||||||
seq2  CAACTTCAGGG  1146

seq1: chr15_71897797_71898858
seq2: B6Ng01-159B12.g_70_1133 (reverse)

seq1  TAAGGA-GTGGGTGAGAGTTGTTCTTTTTAGCGATGCCATATGCTGTGGA  49
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAGGAGGTGGGTGAGAGGTGTTCTTTTTAGCGATGCCATATGCTGTGGA  50

seq1  TTGGTATTCATGCTTTGGTTGGTTTGCAAGTTCAGATCTCAACAGAAACG  99
       | |||| |||||||||||| |||||||||||||||||||||||||||||
seq2  -TAGTATCCATGCTTTGGTT-GTTTGCAAGTTCAGATCTCAACAGAAACG  98

seq1  TGACAAGGTGGTCATCACCCAAGCACTCATGGCCATTGAACAAAGGGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGTGGTCATCACCCAAGCACTCATGGCCATTGAACAAAGGGCCT  148

seq1  GCTCTGAAGTATGGTTAT-CCATGCTAC-ATAAATAATAGGCATTTGAGT  197
      |||||||||||| | ||| ||||||||| |||||||||||||||||||||
seq2  GCTCTGAAGTATTGGTATCCCATGCTACAATAAATAATAGGCATTTGAGT  198

seq1  CCTTAGCTCTAGCACCCCACAGGTCTGTGTACCCATTGCACTGGGATGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTCTAGCACCCCACAGGTCTGTGTACCCATTGCACTGGGATGAG  248

seq1  TAAGACTCGATTTCCTTGATCAGCCC-TTGCACATTGCTGAGGCTATGCC  296
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAGACTCGATTTCCTTGATCAGCCCTTTGCACATTGCTGAGGCTATGCC  298

seq1  CATTGCACATGATAGGGTAATCATGGTCTACCAAAAACAAGATCCTACTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCACATGATAGGGTAATCATGGTCTACCAAAAACAAGATCCTACTT  348

seq1  GATCCTTGCAAGCTGAAGAGGCTAGCGACTAGATCGTTGGATTAGGCCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTGCAAGCTGAAGAGGCTAGCGACTAGATCGTTGGATTAGGCCAT  398

seq1  AATAATAAAAAAGGGGGGAGATGTGGGAAGCCACATATGCCATTACAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAAAAGGGGGGAGATGTGGGAAGCCACATATGCCATTACAAGA  448

seq1  TGGTGCTGGCTACCGCTGGCCACCACCCGTAAGTTCAGATAAACAACCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGGCTACCGCTGGCCACCACCCGTAAGTTCAGATAAACAACCAA  498

seq1  TGTGCACATGTGCATAAGGGTTTCATGCCAAGTCACAGCCCATCCCATGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATGTGCATAAGGGTTTCATGCCAAGTCACAGCCCATCCCATGG  548

seq1  AATGTAAATGAGACACTGAAGGCACAACCAATTAGATATAGACACACCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATGAGACACTGAAGGCACAACCAATTAGATATAGACACACCAC  598

seq1  TCCTAGGCCTATATAAGCAGCGCAAGTTTTGGGGCTCGGGGTCTTTCGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCCTATATAAGCAGCGCAAGTTTTGGGGCTCGGGGTCTTTCGCC  648

seq1  TTCGCTATCAAGCTCTTCTAATAAACGTGTGCAGAAGAATCCTGTTGTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTATCAAGCTCTTCTAATAAACGTGTGCAGAAGAATCCTGTTGTGG  698

seq1  TGTCTTCCTTGCTGGCGAGTCGGGCATCCACAGGAAAACACTAAATATGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTTGCTGGCGAGTCGGGCATCCACAGGAAAACACTAAATATGA  748

seq1  ACTTAAACCACTCAATATGAAGTGATCAAAAAGGTTTGGGATTATAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAACCACTCAATATGAAGTGATCAAAAAGGTTTGGGATTATAATAT  798

seq1  AATACTGGATGATAGAAATTTCACTTGTTTCACATCTGCCCATTATTTTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGATGATAGAAATTTCACTTGTTTCACATCTGCCCATTATTTTC  848

seq1  CCCAAGTCATTGGATCAAATCCTACCAATCCTGATCGTCAGAGCTCTCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCATTGGATCAAATCCTACCAATCCTGATCGTCAGAGCTCTCAC  898

seq1  CAACATCCTGTTGGGAAGGATCATGAAGCTTTTGGGGGGATTTTGTTTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCTGTTGGGAAGGATCATGAAGCTTTTGGGGGGATTTTGTTTTC  948

seq1  TTTTGTTTTTTTCGATTCTCACTTGTACTCCTGAAATATAAATTAAAAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTCGATTCTCACTTGTACTCCTGAAATATAAATTAAAAGT  998

seq1  CTAGAAATTTAACATCAACTGAAACATACGACTGTGGGATAAATACAACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAATTTAACATCAACTGAAACATACGACTGTGGGATAAATACAACT  1048

seq1  TTACATAATTGAATTC  1062
      |||| |||||||||||
seq2  TTACTTAATTGAATTC  1064