BAC Information

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BAC

Clone NameB6Ng01-159I21
Chromosome15 (Build37)
Map Location 55,787,008 - 55,941,432
singlet/doubletdoublet
Overlap geneLOC665348, LOC100039908
Upstream geneLOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1, Mrpl13, Mtbp, Sntb1
Downstream geneHba-ps3, Has2, EG594843, LOC435442, LOC100040067, LOC100039984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159I21.bB6Ng01-159I21.g
ACCDH953185DH953186
length1,0631,070
definitionDH953185|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I21, 5' end.DH953186|Mus musculus domesticus DNA, BAC clone: B6Ng01-159I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,940,354 - 55,941,432)(55,787,008 - 55,788,084)
sequence
gaattcttccaaaataatgtctgtgacctatcctttagttataggtgccc
attcagtgtgtgtaaatgtagacaagaaatttgggggtactaagacaccc
tctgacctccaaaaaaactccatccctcattttagtgttaaaatttgtag
cctaaatcggtcattcattccttcataagaaagcatcaaaacttaatgct
atcaatgtatgattctgctcttttgtgtggctcattcatgcagcccagct
gtctacgggagtcgacaggcttgaggttcaaagttggtctcctcatctac
aactactgatacttgtgaatagctgaagtcacctaattttcctccacatg
gccttttattcttcagggtacaaatctctttgtaaccaatatggaagtta
gagaacaaaattccaaaaagacaaaagcagacagtgaggagcctcctgaa
aaaacacagctgaactattagtaacaataaaggcttttctgaagtcttta
tcatggagcgagtggactaagtgagttgttcgttctgagtcgtgtagcat
aagacccacccagcatcagtgagagggcagatatggaggtccagggatcc
aggaacagagatgaaaaaaaagtgggggggggggtctcttgaaaacagga
agcttaaacagaaatgaaagcaagaacagcaagccatagtgaccactaga
tttcttgagaaccaccacgggtagagaggcatgggtcctggtagcctaga
gcagtaatactcactgctgggtcctagactgccggtgttcaaagaccaga
acaataaaccaaagcttcacatctctgactttcaaatcctggagtcctgt
acctcagtttctccgggttggaaactataagcctctagattgaagcctat
cctctaaacctctggtactcaacatggcagctgggagtggtggctggcaa
cacagaggaagctgtttatgttatttacaatttgtatgtgcattaacagt
aaaaaaaacactcaaatagccatttatgccagtaaaccccatctttgctg
gcctcttatctct
gaattcaagagaatgtttcaccctgattgaagggatcatttggaaacagg
atctttggagatagatttagctaagatgggacaacatgaagagaatgagt
cccaatccaacatggtgatctactaaatatcaaaaatgtgtacacatacc
taacaactggggttgtggcaccccatgcctggaaagtaccagaagtcaaa
aggcagcttgcagaagggagaagattcctccctagtgcatgcaaggtact
ttcctattgcatatatttacatgttagatgtgtgaagcatgatactgctt
ttttgtttgtttgtttgtttgtttacattatccaatagatgttactgaaa
caagatccccaaataataagacaaaaataacttttggggttttttttgag
acagaacttctctgtttggccaaagctggcatagaactcatgagactcct
gcctcatcttccaaagttctggaattataggcttgtggcactacacctgt
tgtgttctttataaaagcaagcatattggataaaatataatacagtgtca
aaagtgaagtataaaatacaaggatttattgaaacaattaagaaggattg
ataacaattttctcctattaatacacaaaccaagtagataaagaaacatt
tgtaaaatgtgtatgacctataatatagaatttgcgtaccctataaagtc
catttgagtctgccactaaaagaatattctcaattatgcctgtaacaatg
gctttggaatagatccactgacagggcttctgttttctaaacaggtcaaa
tgaggctgtcttgatagaccacttaaatctgctgctaaactcctcagtta
tacactgggaatactaaagaaactaaatcaatgttacagacatgaaactt
agagaagagtgagtaaacgtgatctttaagaaaaatcgctggatggcagt
ccatcttgtacagtcgtatggaaatcagtttggcagttcctccagaaagt
agcagatatcttctggagggctagcttatgctattgtagggatgcactcc
aaagggcctgtaatcctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_55940354_55941432
seq2: B6Ng01-159I21.b_47_1109 (reverse)

seq1  AGAGATAAGAAGGGCAGCAAAGATGGGGTATTATTGCCATAAATGGCTAT  50
      ||||||||| ||| ||||||||||||||| ||| || |||||||||||||
seq2  AGAGATAAG-AGGCCAGCAAAGATGGGGT-TTACTGGCATAAATGGCTAT  48

seq1  TTGAGTGTTTTTTTTAACTTGTTTAATGCACATACAAATTGTAAATTAAC  100
      ||||||||||||||| |||   ||||||||||||||||||||||| ||||
seq2  TTGAGTGTTTTTTTT-ACT--GTTAATGCACATACAAATTGTAAA-TAAC  94

seq1  AATAAACAGCTTCCCTCTGTGTTGCCAGCCACCACTCCCCAGCCTGCCCA  150
       ||||||||||| ||||||||||||||||||||||| ||||| ||| |||
seq2  -ATAAACAGCTT-CCTCTGTGTTGCCAGCCACCACT-CCCAG-CTG-CCA  139

seq1  TTGGTTGAGTACCAGAGGTTTAGAGGATAGGCCTTCAAATCTAGAGGCTT  200
      |  |||||||||||||||||||||||||||| |||| |||||||||||||
seq2  T--GTTGAGTACCAGAGGTTTAGAGGATAGG-CTTC-AATCTAGAGGCTT  185

seq1  ATAGTTTCCAACCCGGAGAAACTGAGGTACAGGACTCCAGGATTTGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCAACCCGGAGAAACTGAGGTACAGGACTCCAGGATTTGAAAG  235

seq1  TCAGAGATGTGAAGCTTTTGGTTTATTGTTCTGGTCTTTGAACACCGGCA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAGAGATGTGAAGC-TTTGGTTTATTGTTCTGGTCTTTGAACACCGGCA  284

seq1  GTCTAGGACCCAGCAGTGAGTATTACTGCTCTAGGCTACCAGGACCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGGACCCAGCAGTGAGTATTACTGCTCTAGGCTACCAGGACCCATG  334

seq1  CCTCTCTACCCGTGGTGGTTCTCAAGAAATCTAGTGGTCACTATGGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTACCCGTGGTGGTTCTCAAGAAATCTAGTGGTCACTATGGCTTG  384

seq1  CTGTTCTTGCTTTCATTTCTGTTTAAGCTTCCTGTTTTCAAGAGACCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTGCTTTCATTTCTGTTTAAGCTTCCTGTTTTCAAGAGACCCCC  434

seq1  CCCCCCACTTTTTTTTCATCTCTGTTCCTGGATCCCTGGACCTCCATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACTTTTTTTTCATCTCTGTTCCTGGATCCCTGGACCTCCATATC  484

seq1  TGCCCTCTCACTGATGCTGGGTGGGTCTTATGCTACACGACTCAGAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTCACTGATGCTGGGTGGGTCTTATGCTACACGACTCAGAACGA  534

seq1  ACAACTCACTTAGTCCACTCGCTCCATGATAAAGACTTCAGAAAAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCACTTAGTCCACTCGCTCCATGATAAAGACTTCAGAAAAGCCTT  584

seq1  TATTGTTACTAATAGTTCAGCTGTGTTTTTTCAGGAGGCTCCTCACTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTACTAATAGTTCAGCTGTGTTTTTTCAGGAGGCTCCTCACTGTC  634

seq1  TGCTTTTGTCTTTTTGGAATTTTGTTCTCTAACTTCCATATTGGTTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGTCTTTTTGGAATTTTGTTCTCTAACTTCCATATTGGTTACAA  684

seq1  AGAGATTTGTACCCTGAAGAATAAAAGGCCATGTGGAGGAAAATTAGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTGTACCCTGAAGAATAAAAGGCCATGTGGAGGAAAATTAGGTG  734

seq1  ACTTCAGCTATTCACAAGTATCAGTAGTTGTAGATGAGGAGACCAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCTATTCACAAGTATCAGTAGTTGTAGATGAGGAGACCAACTTT  784

seq1  GAACCTCAAGCCTGTCGACTCCCGTAGACAGCTGGGCTGCATGAATGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCAAGCCTGTCGACTCCCGTAGACAGCTGGGCTGCATGAATGAGC  834

seq1  CACACAAAAGAGCAGAATCATACATTGATAGCATTAAGTTTTGATGCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAGAGCAGAATCATACATTGATAGCATTAAGTTTTGATGCTTT  884

seq1  CTTATGAAGGAATGAATGACCGATTTAGGCTACAAATTTTAACACTAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGAAGGAATGAATGACCGATTTAGGCTACAAATTTTAACACTAAAA  934

seq1  TGAGGGATGGAGTTTTTTTGGAGGTCAGAGGGTGTCTTAGTACCCCCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGATGGAGTTTTTTTGGAGGTCAGAGGGTGTCTTAGTACCCCCAAA  984

seq1  TTTCTTGTCTACATTTACACACACTGAATGGGCACCTATAACTAAAGGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCTACATTTACACACACTGAATGGGCACCTATAACTAAAGGAT  1034

seq1  AGGTCACAGACATTATTTTGGAAGAATTC  1079
      |||||||||||||||||||||||||||||
seq2  AGGTCACAGACATTATTTTGGAAGAATTC  1063

seq1: chr15_55787008_55788084
seq2: B6Ng01-159I21.g_67_1136

seq1  GAATTCAAGAGAATGTTTCACCCTGATTGAAGGGATCATTTGGAAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAATGTTTCACCCTGATTGAAGGGATCATTTGGAAACAGG  50

seq1  ATCTTTGGAGATAGATTTAGCTAAGATGGGACAACATGAAGAGAATGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGAGATAGATTTAGCTAAGATGGGACAACATGAAGAGAATGAGT  100

seq1  CCCAATCCAACATGGTGATCTACTAAATATCAAAAATGTGTACACATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCAACATGGTGATCTACTAAATATCAAAAATGTGTACACATACC  150

seq1  TAACAACTGGGGTTGTGGCACCCCATGCCTGGAAAGTACCAGAAGTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTGGGGTTGTGGCACCCCATGCCTGGAAAGTACCAGAAGTCAAA  200

seq1  AGGCAGCTTGCAGAAGGGAGAAGATTCCTCCCTAGTGCATGCAAGGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTTGCAGAAGGGAGAAGATTCCTCCCTAGTGCATGCAAGGTACT  250

seq1  TTCCTATTGCATATATTTACATGTTAGATGTGTGAAGCATGATACTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGCATATATTTACATGTTAGATGTGTGAAGCATGATACTGCTT  300

seq1  TTTTGTTTGTTTGTTTGTTTGTTTACATTATCCAATAGATGTTACTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTGTTTGTTTACATTATCCAATAGATGTTACTGAAA  350

seq1  CAAGATCCCCAAATAATAAGACAAAAATAACTTTTGGGGTTTTTTTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCCAAATAATAAGACAAAAATAACTTTTGGGGTTTTTTTTGAG  400

seq1  ACAGAACTTCTCTGTTTGGCCAAAGCTGGCATAGAACTCATGAGACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTTCTCTGTTTGGCCAAAGCTGGCATAGAACTCATGAGACTCCT  450

seq1  GCCTCATCTTCCAAAGTTCTGGAATTATAGGCTTGTGGCACTACACCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATCTTCCAAAGTTCTGGAATTATAGGCTTGTGGCACTACACCTGT  500

seq1  TGTGTTCTTTATAAAAGCAAGCATATTGGATAAAATATAATACAGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTTTATAAAAGCAAGCATATTGGATAAAATATAATACAGTGTCA  550

seq1  AAAGTGAAGTATAAAATACAAGGATTTATTGAAACAATTAAGAAGGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAAGTATAAAATACAAGGATTTATTGAAACAATTAAGAAGGATTG  600

seq1  ATAACAATTTTCTCCTATTAATACACAAACCAAGTAGATAAAGAAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTTTCTCCTATTAATACACAAACCAAGTAGATAAAGAAACATT  650

seq1  TGTAAAATGTGTATGACCTATAATATAGAATTTGCGTACCCTATAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGTGTATGACCTATAATATAGAATTTGCGTACCCTATAAAGTC  700

seq1  CATTTGAGTCTGCCACTAAAAGAATATTCTCAATTATGCCTGTAACAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGTCTGCCACTAAAAGAATATTCTCAATTATGCCTGTAACAATG  750

seq1  GCTTTGGAATAGATCCACTGACAGGGCTTCTGTTTTCTAAACAGGTCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAATAGATCCACTGACAGGGCTTCTGTTTTCTAAACAGGTCAAA  800

seq1  TGAGGCTGTCTTGATAGACCACTTAAATCTGCTGCTAAAACTCCTCAGTT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGAGGCTGTCTTGATAGACCACTTAAATCTGCTGCT-AAACTCCTCAGTT  849

seq1  ATACACTGGGAATACTAAAGAAACTAAATCAAATGTTAACAAGACATGAA  900
      |||||||||||||||||||||||||||||| |||||||   |||||||||
seq2  ATACACTGGGAATACTAAAGAAACTAAATC-AATGTTA--CAGACATGAA  896

seq1  ACTTAAGAGAAGAGTGAAGTAAAACGTGATC-TTAAGAAATATCGCT-GA  948
      |||| ||||||||||| ||| |||||||||| |||||||| |||||| ||
seq2  ACTT-AGAGAAGAGTG-AGT-AAACGTGATCTTTAAGAAAAATCGCTGGA  943

seq1  TGGCAGTTCAATCTTGTACAGTCGTATGGAAATCAGTTTGGCAGTTCCTC  998
      |||||| || ||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAG-TCCATCTTGTACAGTCGTATGGAAATCAGTTTGGCAGTTCCTC  992

seq1  AGGAAAGTAGCAGATAATCTTCATGAAGGTCTAGC-TATGCTATTGTAGG  1047
        ||||||||||||| |||||| || ||| ||||| ||||||||||||||
seq2  CAGAAAGTAGCAGAT-ATCTTC-TGGAGGGCTAGCTTATGCTATTGTAGG  1040

seq1  GCATGCAC-CCAAAGGGCCATGAATCCTATC  1077
      | |||||| ||||||||||   |||||||||
seq2  G-ATGCACTCCAAAGGGCCTGTAATCCTATC  1070