BAC Information

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BAC

Clone NameB6Ng01-159O08
Chromosome15 (Build37)
Map Location 99,730,876 - 99,870,665
singlet/doubletdoublet
Overlap gene1700030F18Rik, Gm920, D330037H05Rik
Upstream geneLmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918
Downstream gene4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O08.bB6Ng01-159O08.g
ACCDH953426DH953427
length1,1191,082
definitionDH953426|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O08, 5' end.DH953427|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,730,876 - 99,732,004)(99,869,568 - 99,870,665)
sequence
gaattcttcatgtctccatgctttcaaagataagaatgtttctgtctgtc
tgggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggca
ggtggatttctgagttcgaggccagcctggtctacagagtgagttccagg
acagccagggctacacagagaattcctgtctcaaaaaccacacacacaaa
aaagaatgtttctgtcctttgactatggagagactgcctttccactgaca
gtgtagctactactgttgctctgtttgtatgtgctgttattattagttat
tattattactaattctattgaatgtttgggtgggtgttgtgtctgcatag
atgtctgttcaccaagtacatgcagttcccaaggaggccagaaaaagggg
tcttctgggaccgcaattataaatggctgccgtgtgaatataggaaacag
aacccaggccctctggaagagcagccagtgctcttaaccactgagccatc
catctctccagcactgagcctttgtttcttattatattttatcttatatg
tggatgtgtgcttgccacagcccacacgtggagagcagaggtcagttctt
tcccaccaagtggctcctggggactacatttggctcggcagcaagtgcct
ctacctgctgagccatcgctggactgcagagagcgttcatgacctgcttt
aggggtgaggaacgaagggaaggtttcctgtgtccgctgtgcccctgaat
accaaggtgtcatatctgggggtccagtgtaggtcctctcagtgctcccg
tgtgttcagcggcagcttgcgtgcatgttcaagctgcctcagtcctctta
gatgtgctttgtcctctccgtgttcaccttaccaaaaccttatatagtaa
aataaggttttatttctattattttaaatcatgtataggtatatgtgtct
acataatgggtatgtgcccgtgagaccagaggcattgaatgcccttgagc
tgcggtacaaggccggaatcacccagaggggctggtacttaatttggtct
ctcgaaaaacacaagtgccctatagctcagagcaatcttctcagcccaaa
ctgttttttctttctgtgg
tcacactcggtggcaacactttcacaagaagatgacaagaaaaaaacaaa
accttaagggaaatatattttaataaactacttcaaatgttttttttttt
ttaaatctggtaaatattgtaaccaaaggtatcaccgggcaagcaaccca
aaggtttcctatcttcctaaacgcttccccactgattaattgaaaagtaa
tatgttgataattgcatgcaggtgaaaagatcaccaccctacacattggg
aaagccttaaagggttattaaaattaattatttccttcaatcgagtaaga
tctgtgacactcaaacgcacttctggcttttcactataagtgattctcaa
aaaggtttgaaaaagcccagtgtcgtgacaagttaacaaaaagtcggaac
tagaacgctcctgggaacttgatcacattccttactcttttccaatcaac
agtttttagtgaacttgaaaaatactggggagggtctttggcaaggaatt
caacaatatgcaactctggagacatcagcgaagtgtacggaaaccaagcg
cggagaaaatgctgcttttgttcagaggccgcctgcgataaaaacaggaa
ctttacagagaagctgatctccacagcacattcgcctgaccacatgccca
cagccggcattgaggtcctcattgttatccaaggcacttctcttgtaaca
gagcccagatttagtccatgtttgaaattatctacacaaacccaaccctc
cctgtaccaatccattgtcaaaagaaagagggtgccggccaggatttgca
tgtacccggtagccacctctacaaagactccaaaagtgaccagataggaa
aacctagactgaatgcagtggcagaaagcctgctgctcccaaggacagat
gcgtctagaggcagcggatcgggggtctctgggttagcgcaccgcttcga
cctccctcgacctcaatggctcccccgctcctttcttacgctgtcactgg
tgtaggcacctcgcattgttaagaagaagaagactgtcgactgcggcgtt
cccttggcctcgtctgagccgaccgaggggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99730876_99732004
seq2: B6Ng01-159O08.b_49_1167

seq1  GAATTCTTCATGTCTCCATGCTTTCAAAGATAAGAATGTTTCTGTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGTCTCCATGCTTTCAAAGATAAGAATGTTTCTGTCTGTC  50

seq1  TGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCA  100

seq1  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  150

seq1  ACAGCCAGGGCTACACAGAGAATTCCTGTCTCAAAAACCACACACACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTACACAGAGAATTCCTGTCTCAAAAACCACACACACAAA  200

seq1  AAAGAATGTTTCTGTCCTTTGACTATGGAGAGACTGCCTTTCCACTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTTTCTGTCCTTTGACTATGGAGAGACTGCCTTTCCACTGACA  250

seq1  GTGTAGCTACTACTGTTGCTCTGTTTGTATGTGCTGTTATTATTAGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTACTACTGTTGCTCTGTTTGTATGTGCTGTTATTATTAGTTAT  300

seq1  TATTATTACTAATTCTATTGAATGTTTGGGTGGGTGTTGTGTCTGCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTACTAATTCTATTGAATGTTTGGGTGGGTGTTGTGTCTGCATAG  350

seq1  ATGTCTGTTCACCAAGTACATGCAGTTCCCAAGGAGGCCAGAAAAAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCACCAAGTACATGCAGTTCCCAAGGAGGCCAGAAAAAGGGG  400

seq1  TCTTCTGGGACCGCAATTATAAATGGCTGCCGTGTGAATATAGGAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGGACCGCAATTATAAATGGCTGCCGTGTGAATATAGGAAACAG  450

seq1  AACCCAGGCCCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGCCCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCATC  500

seq1  CATCTCTCCAGCACTGAGCCTTTGTTTCTTATTATATTTTATCTTATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCCAGCACTGAGCCTTTGTTTCTTATTATATTTTATCTTATATG  550

seq1  TGGATGTGTGCTTGCCACAGCCCACACGTGGAGAGCAGAGGTCAGTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGTGCTTGCCACAGCCCACACGTGGAGAGCAGAGGTCAGTTCTT  600

seq1  TCCCACCAAGTGGCTCCTGGGGACTACATTTGGCTCGGCAGCAAGTGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAAGTGGCTCCTGGGGACTACATTTGGCTCGGCAGCAAGTGCCT  650

seq1  CTACCTGCTGAGCCATCGCTGGACTGCAGAGAGCGTTCATGACCTGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGCTGAGCCATCGCTGGACTGCAGAGAGCGTTCATGACCTGCTTT  700

seq1  AGGGGTGAGGAACGAAGGGAAGGTTTCCTGTGTCCGCTGTGCCCCTGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGGAACGAAGGGAAGGTTTCCTGTGTCCGCTGTGCCCCTGAAT  750

seq1  ACCAAGGTGTCATATCTGGGGGTCCAGTGTAGGTCCTCTCAGTGCTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGTGTCATATCTGGGGGTCCAGTGTAGGTCCTCTCAGTGCTCCCG  800

seq1  TGTGTTCAGCGGCAGCTTGCGTGCATGTCCAAGCTGCCTCAGTCCTCCTC  850
      |||||||||||||||||||||||||||| ||||||||||||||||| || 
seq2  TGTGTTCAGCGGCAGCTTGCGTGCATGTTCAAGCTGCCTCAGTCCT-CTT  849

seq1  AGATGTGCTTTGTCCTCTCCGTGTTCACCTTACCAAAACCTTATATAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTTTGTCCTCTCCGTGTTCACCTTACCAAAACCTTATATAGTA  899

seq1  AAATAAGGTTTTATTTCTATTATTTTAAATCATGTATAGGTATATGTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGTTTTATTTCTATTATTTTAAATCATGTATAGGTATATGTGTC  949

seq1  TACAT-ATGGGTATGTGCCCGTGGAGACCAGAGGCATTGAATGCCCTGGA  999
      ||||| |||||||||||||||| |||||||||||||||||||||||| ||
seq2  TACATAATGGGTATGTGCCCGT-GAGACCAGAGGCATTGAATGCCCTTGA  998

seq1  GCTGCGGTTACAAAAGGCCGTGAGCCACCCGAGGGGGCTGGGCACTGAAC  1049
      ||||||||   | ||||||| ||  |||||   |||||| || ||| || 
seq2  GCTGCGGT---ACAAGGCCG-GAATCACCCAGAGGGGCT-GGTACTTAA-  1042

seq1  TCTGGTCCTCTGGAAGAGCAGCAAGTGCTCT-TAGCCACGGAGCCATCTC  1098
      | |||| |||| ||| | || ||||||| || ||| | | |||| |||| 
seq2  TTTGGT-CTCTCGAAAAACA-CAAGTGCCCTATAG-CTCAGAGCAATCTT  1089

seq1  TCCAGCCCAGACTGTCTTTTTCTTTCTGTGG  1129
        ||||||| ||||| |||||||||||||||
seq2  CTCAGCCCAAACTGT-TTTTTCTTTCTGTGG  1119

seq1: chr15_99869568_99870665
seq2: B6Ng01-159O08.g_75_1156 (reverse)

seq1  GTCCCCTCGCTCCGGCTTCAGAACGAGGCGCAGGGGGACGCCGCAGCTGC  50
      ||||||||| | |||| |||| ||||||| || ||| |||||||||  | 
seq2  GTCCCCTCGGT-CGGC-TCAG-ACGAGGC-CAAGGGAACGCCGCAGTCGA  46

seq1  ACGTCTTCCTGCTTCTCTAACAATGCGAGGTGCCT-CACCAGTGACAGGC  99
        ||||| || ||||| |||||||||||||||||| ||||||||||| ||
seq2  CAGTCTT-CTTCTTCT-TAACAATGCGAGGTGCCTACACCAGTGACA-GC  93

seq1  GTGAGAAAGGAGCGGGGGAGCCATTGAGGGTCCGAGGGAGGTCGGAAGCG  149
      || ||||||||||||||||||||||||||   ||||||||||| ||||||
seq2  GTAAGAAAGGAGCGGGGGAGCCATTGAGG--TCGAGGGAGGTC-GAAGCG  140

seq1  GTGGCGCTAACCCAGAGACCCCCCGATCCGCTGCCTCTAGACCGCCTCTG  199
      || ||||||||||||||| |||||||||||||||||||||| ||| ||||
seq2  GT-GCGCTAACCCAGAGA-CCCCCGATCCGCTGCCTCTAGA-CGCATCTG  187

seq1  TCCTTGGGAGCAGCAGGCTTTTCTTGCCACCTGCATTCAGTCTAGGTTTT  249
      |||||||||||||||||||||   ||||| ||||||||||||||||||||
seq2  TCCTTGGGAGCAGCAGGCTTT--CTGCCA-CTGCATTCAGTCTAGGTTTT  234

seq1  CCTATCTGGTCACCTTTTGGAGTCTTTGTAGAGGTGGCTACCGGGTACAT  299
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCTATCTGGTCA-CTTTTGGAGTCTTTGTAGAGGTGGCTACCGGGTACAT  283

seq1  GCAAATCCTGGCCGGCACCCTCTTTCTTTTGACAATGGATTGGTACAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCTGGCCGGCACCCTCTTTCTTTTGACAATGGATTGGTACAGGG  333

seq1  AGGGTTGGGTTTGTGTAGATAATTTCAAACATGGACTAAATCTGGGCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGGTTTGTGTAGATAATTTCAAACATGGACTAAATCTGGGCTCT  383

seq1  GTTACAAGAGAAGTGCCTTGGATAACAATGAGGACCTCAATGCCGGCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAGAGAAGTGCCTTGGATAACAATGAGGACCTCAATGCCGGCTGT  433

seq1  GGGCATGTGGTCAGGCGAATGTGCTGTGGAGATCAGCTTCTCTGTAAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATGTGGTCAGGCGAATGTGCTGTGGAGATCAGCTTCTCTGTAAAGT  483

seq1  TCCTGTTTTTATCGCAGGCGGCCTCTGAACAAAAGCAGCATTTTCTCCGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTTATCGCAGGCGGCCTCTGAACAAAAGCAGCATTTTCTCCGC  533

seq1  GCTTGGTTTCCGTACACTTCGCTGATGTCTCCAGAGTTGCATATTGTTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTTCCGTACACTTCGCTGATGTCTCCAGAGTTGCATATTGTTGA  583

seq1  ATTCCTTGCCAAAGACCCTCCCCAGTATTTTTCAAGTTCACTAAAAACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGCCAAAGACCCTCCCCAGTATTTTTCAAGTTCACTAAAAACTG  633

seq1  TTGATTGGAAAAGAGTAAGGAATGTGATCAAGTTCCCAGGAGCGTTCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGAAAAGAGTAAGGAATGTGATCAAGTTCCCAGGAGCGTTCTAG  683

seq1  TTCCGACTTTTTGTTAACTTGTCACGACACTGGGCTTTTTCAAACCTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGACTTTTTGTTAACTTGTCACGACACTGGGCTTTTTCAAACCTTTT  733

seq1  TGAGAATCACTTATAGTGAAAAGCCAGAAGTGCGTTTGAGTGTCACAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATCACTTATAGTGAAAAGCCAGAAGTGCGTTTGAGTGTCACAGAT  783

seq1  CTTACTCGATTGAAGGAAATAATTAATTTTAATAACCCTTTAAGGCTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCGATTGAAGGAAATAATTAATTTTAATAACCCTTTAAGGCTTTC  833

seq1  CCAATGTGTAGGGTGGTGATCTTTTCACCTGCATGCAATTATCAACATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTGTAGGGTGGTGATCTTTTCACCTGCATGCAATTATCAACATAT  883

seq1  TACTTTTCAATTAATCAGTGGGGAAGCGTTTAGGAAGATAGGAAACCTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAATTAATCAGTGGGGAAGCGTTTAGGAAGATAGGAAACCTTT  933

seq1  GGGTTGCTTGCCCGGTGATACCTTTGGTTACAATATTTACCAGATTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTTGCCCGGTGATACCTTTGGTTACAATATTTACCAGATTTAAA  983

seq1  AAAAAAAAAACATTTGAAGTAGTTTATTAAAATATATTTCCCTTAAGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACATTTGAAGTAGTTTATTAAAATATATTTCCCTTAAGGTT  1033

seq1  TTGTTTTTTTCTTGTCATCTTCTTGTGAAAGTGTTGCCACCGAGTGTGA  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTCTTGTCATCTTCTTGTGAAAGTGTTGCCACCGAGTGTGA  1082