BAC Information

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BAC

Clone NameB6Ng01-159O16
Chromosome15 (Build37)
Map Location 66,308,790 - 66,427,408
singlet/doubletdoublet
Overlap geneLrrc6, Tmem71, LOC100040881, Phf20l1
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, LOC100040860
Downstream geneTg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159O16.bB6Ng01-159O16.g
ACCDH953442DH953443
length1,1051,149
definitionDH953442|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O16, 5' end.DH953443|Mus musculus domesticus DNA, BAC clone: B6Ng01-159O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,426,287 - 66,427,408)(66,308,790 - 66,309,951)
sequence
gaattccttacacatccttcttaaatgtttgttccttctatcttaccttc
tatttctttcaagcttatttttaatttgaacctaaagtttaaactttctc
cattgctttcatcacctccaaacaaaattcaaatcctttagcaaggttct
aaagtttttcaggtcctgattgttgcttctgtccaaccatgtccctacta
tttcattgcaaacaaagcccttctggctcttcttccactagcttatgtgt
ctttcacaactttactgaagtgtctcctgagtagatcacatgccctttca
aagaacctgtcactaagtgtgtgcagcgtttgtttctttaaaaatggcag
ttaagttgtggtcaagtttattatataaatatggtatttgaagattaata
ttctgtctgaaagatttcttaggttcatgggaaatcttactaacacacct
cgtattttgattcaggctgggaagtcatgagtcatgtcactctgaaatat
ttaacaaatattcccatagagagtactaacagaaaatccacacagaacag
tataaaacaagaaaaaagttatatgagacaattatataccttaatggaaa
tttaaatctcagtcctatttatgtctcaggtcatgtcaaatgcatacctt
ctttgttaattgcttcaatcttggcagggtaatagcgacagtctgtccaa
cgagccagtacttcttctccagctttaaaatcctattcaaacaactttta
agatcaatttcaaatataataaatatttcattaacaaaaaaagctgttaa
atttgacaggatccttttaaaatgtcattatttatgaaaggaacaactgg
gaaaagattcctacttacaaagagctcttcctcatcctttagcccttctt
tccttagtgcagtctctcaaggggtcgcaacctgtgctgtcccagtaaat
ccactcatcatatcgatgactccagcgctcaaaatggactagcatcttcc
cttcttcataatcattttcaattcggatggatacctcaaaaaaattaaaa
gcttcatatcaaaaatccttctgtttgtcaattaaatagcgaaagattta
tgggt
gaattctttatctgggaaacttcaaaatatttttttttaacaagtaaaca
aaaactgatgtttttgccaacagaagatctaccatacagaaatacattaa
atggcatctttgaggttgaaatgaagacatgaaatgaagatatgaagata
ttagaatcaatgtatcagctgttgtgggtagggcttttgcagtcacagtg
gtaaactccagggctataagccactgggtggctattcaagtgtcattcaa
gatactctgtcctaacacacagcctgttaccatacagggttggcagttga
gaagcgtggacagggcataccaggcagtgtggaccagcagtgcagagcac
cagagttgaccagcagtgtagactagcagtgcagagcagcagtgtggaca
agcagtgtgggccagcagtgtggaccaccagtatagaccagcagtgtgga
ccagcagtgcagagcagcagtgtggaccagctgtgtaaaccagcagtgcg
gaccagtagtgcagagcagcaatgcagaccagcagtgcagaccagcagtg
tggaccagcagtgcagagcagcagtgtagactagcagtagtgttatgaaa
agtgacaagagccacaccaaagaatccctacacacacctaccaaagaatc
aaggacccaagtgcccatgtttagggcctgtgaggtcaaagtcagtgaca
tcctgaagagacggatgttcagaggtagaacatgtatctgcagtgatgta
tcttcggcccagaaggagataatgcaacaaaaagttaaagtcatgaaaac
acatgtgttcatgatagttctgatccttccaaacctgttatttagcatct
caaattcaattattacaaaaaggatccacaatagaagcaactatgtgagt
aaatgcaaaagtcatataactcacttttttgtacttttctctctgagctt
atttttaaatgactataaaaatcagtcatcataatcctgtactgaggggt
aggtaaatatatataagaaattggtttgtgggtaactaaagcaataggta
aggaaggcagcatggatcatagccaagtccttggctactgtgtgaaatac
tagacttaacggattggacgtcttaaaagatacaaattttattcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_66426287_66427408
seq2: B6Ng01-159O16.b_49_1153 (reverse)

seq1  ACCCATTAAAATCTTTCTGCTTAATTTATATTTGAC-AACAGAAGGATTT  49
      ||||||  ||||||||| |||  |||  || ||||| ||||||||||   
seq2  ACCCAT--AAATCTTTC-GCT--ATT--TAATTGACAAACAGAAGGA---  40

seq1  TTTTTGATATGAAGCTTTTTAATTTTTTTTGAGGTATCCATCCCGAATTG  99
      |||||||||||||||||||  | |||||||||||||||||| ||||||||
seq2  TTTTTGATATGAAGCTTTT--AATTTTTTTGAGGTATCCAT-CCGAATTG  87

seq1  AAAAAATTGATTATGAAGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGG  149
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAA---TGATTATGAAGAAGGGAAGATGCTAGTCCATTTTGAGCGCTGG  134

seq1  AGTCATCGATATGATGAGTGGATTTACTGGGACAGCAACAGGTTGCGACC  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTCATCGATATGATGAGTGGATTTACTGGGACAGC-ACAGGTTGCGACC  183

seq1  CCTTGAGAGACCTGCACTAAGGAAAGAAGGGCTAAAGGATGAGGAAGAGC  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAGA-CTGCACTAAGGAAAGAAGGGCTAAAGGATGAGGAAGAGC  232

seq1  TCTTTGTAAGTAGGAATCTTTTCCCAGTTGTTCCTTTCATAAATAATGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAAGTAGGAATCTTTTCCCAGTTGTTCCTTTCATAAATAATGAC  282

seq1  ATTTTAAAAGGATCCTGTCAAATTTAACAGCTTTTTTTGTTAATGAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAGGATCCTGTCAAATTTAACAGCTTTTTTTGTTAATGAAATA  332

seq1  TTTATTATATTTGAAATTGATCTTAAAAGTTGTTTGAATAGGATTTTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATATTTGAAATTGATCTTAAAAGTTGTTTGAATAGGATTTTAAA  382

seq1  GCTGGAGAAGAAGTACTGGCTCGTTGGACAGACTGTCGCTATTACCCTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAAGAAGTACTGGCTCGTTGGACAGACTGTCGCTATTACCCTGC  432

seq1  CAAGATTGAAGCAATTAACAAAGAAGGTATGCATTTGACATGACCTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGAAGCAATTAACAAAGAAGGTATGCATTTGACATGACCTGAGA  482

seq1  CATAAATAGGACTGAGATTTAAATTTCCATTAAGGTATATAATTGTCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGGACTGAGATTTAAATTTCCATTAAGGTATATAATTGTCTCA  532

seq1  TATAACTTTTTTCTTGTTTTATACTGTTCTGTGTGGATTTTCTGTTAGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTTTTTTCTTGTTTTATACTGTTCTGTGTGGATTTTCTGTTAGTA  582

seq1  CTCTCTATGGGAATATTTGTTAAATATTTCAGAGTGACATGACTCATGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATGGGAATATTTGTTAAATATTTCAGAGTGACATGACTCATGAC  632

seq1  TTCCCAGCCTGAATCAAAATACGAGGTGTGTTAGTAAGATTTCCCATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCCTGAATCAAAATACGAGGTGTGTTAGTAAGATTTCCCATGAA  682

seq1  CCTAAGAAATCTTTCAGACAGAATATTAATCTTCAAATACCATATTTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAAATCTTTCAGACAGAATATTAATCTTCAAATACCATATTTATA  732

seq1  TAATAAACTTGACCACAACTTAACTGCCATTTTTAAAGAAACAAACGCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACTTGACCACAACTTAACTGCCATTTTTAAAGAAACAAACGCTG  782

seq1  CACACACTTAGTGACAGGTTCTTTGAAAGGGCATGTGATCTACTCAGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTAGTGACAGGTTCTTTGAAAGGGCATGTGATCTACTCAGGAG  832

seq1  ACACTTCAGTAAAGTTGTGAAAGACACATAAGCTAGTGGAAGAAGAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGTAAAGTTGTGAAAGACACATAAGCTAGTGGAAGAAGAGCCA  882

seq1  GAAGGGCTTTGTTTGCAATGAAATAGTAGGGACATGGTTGGACAGAAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTTTGTTTGCAATGAAATAGTAGGGACATGGTTGGACAGAAGCA  932

seq1  ACAATCAGGACCTGAAAAACTTTAGAACCTTGCTAAAGGATTTGAATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGGACCTGAAAAACTTTAGAACCTTGCTAAAGGATTTGAATTTT  982

seq1  GTTTGGAGGTGATGAAAGCAATGGAGAAAGTTTAAACTTTAGGTTCAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGGTGATGAAAGCAATGGAGAAAGTTTAAACTTTAGGTTCAAAT  1032

seq1  TAAAAATAAGCTTGAAAGAAATAGAAGGTAAGATAGAAGGAACAAACATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAGCTTGAAAGAAATAGAAGGTAAGATAGAAGGAACAAACATT  1082

seq1  TAAGAAGGATGTGTAAGGAATTC  1122
      |||||||||||||||||||||||
seq2  TAAGAAGGATGTGTAAGGAATTC  1105

seq1: chr15_66308790_66309951
seq2: B6Ng01-159O16.g_68_1216

seq1  GAATTCTTTATCTGGGAAACTTCAAAATATTTTTTTTTAACAAGTAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTGGGAAACTTCAAAATATTTTTTTTTAACAAGTAAACA  50

seq1  AAAACTGATGTTTTTGCCAACAGAAGATCTACCATACAGAAATACATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATGTTTTTGCCAACAGAAGATCTACCATACAGAAATACATTAA  100

seq1  ATGGCATCTTTGAGGTTGAAATGAAGACATGAAATGAAGATATGAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCTTTGAGGTTGAAATGAAGACATGAAATGAAGATATGAAGATA  150

seq1  TTAGAATCAATGTATCAGCTGTTGTGGGTAGGGCTTTTGCAGTCACAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCAATGTATCAGCTGTTGTGGGTAGGGCTTTTGCAGTCACAGTG  200

seq1  GTAAACTCCAGGGCTATAAGCCACTGGGTGGCTATTCAAGTGTCATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTCCAGGGCTATAAGCCACTGGGTGGCTATTCAAGTGTCATTCAA  250

seq1  GATACTCTGTCCTAACACACAGCCTGTTACCATACAGGGTTGGCAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTGTCCTAACACACAGCCTGTTACCATACAGGGTTGGCAGTTGA  300

seq1  GAAGCGTGGACAGGGCATACCAGGCAGTGTGGACCAGCAGTGCAGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTGGACAGGGCATACCAGGCAGTGTGGACCAGCAGTGCAGAGCAC  350

seq1  CAGAGTTGACCAGCAGTGTAGACTAGCAGTGCAGAGCAGCAGTGTGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGACCAGCAGTGTAGACTAGCAGTGCAGAGCAGCAGTGTGGACA  400

seq1  AGCAGTGTGGGCCAGCAGTGTGGACCACCAGTATAGACCAGCAGTGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTGGGCCAGCAGTGTGGACCACCAGTATAGACCAGCAGTGTGGA  450

seq1  CCAGCAGTGCAGAGCAGCAGTGTGGACCAGCTGTGTAAACCAGCAGTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGTGCAGAGCAGCAGTGTGGACCAGCTGTGTAAACCAGCAGTGCG  500

seq1  GACCAGTAGTGCAGAGCAGCAATGCAGACCAGCAGTGCAGACCAGCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTAGTGCAGAGCAGCAATGCAGACCAGCAGTGCAGACCAGCAGTG  550

seq1  TGGACCAGCAGTGCAGAGCAGCAGTGTAGACTAGCAGTAGTGTTATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGCAGTGCAGAGCAGCAGTGTAGACTAGCAGTAGTGTTATGAAA  600

seq1  AGTGACAAGAGCCACACCAAAGAATCCCTACACACACCTACCAAAGAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAGAGCCACACCAAAGAATCCCTACACACACCTACCAAAGAATC  650

seq1  AAGGACCCAAGTGCCCATGTTTAGGGCCTGTGAGGTCAAAGTCAGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCCAAGTGCCCATGTTTAGGGCCTGTGAGGTCAAAGTCAGTGACA  700

seq1  TCCTGAAGAGACGGATGTTCAGAGGTAGAACATGTATCTGCAGTGATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGAGACGGATGTTCAGAGGTAGAACATGTATCTGCAGTGATGTA  750

seq1  TCTTCGGCCCAGAAGGAGATAATGCAACAAAAAGTTAAAGTCATGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGCCCAGAAGGAGATAATGCAACAAAAAGTTAAAGTCATGAAAAC  800

seq1  ACATGTGTTCATGATAGTTCTGATCCTTCCAAACCTGTTATTTAGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATGTGTTCATGATAGTTCTGATCCTTCCAAACCTGTTATTTAGCATC-  849

seq1  TCAAATTCAAATATTACAAAAAGGATCCACAATAGAAGCAACTATGTGAG  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAATTATTACAAAAAGGATCCACAATAGAAGCAACTATGTGAG  899

seq1  TAAATGCAAAAGTCATATAAACTCACTTTTTTTGTACTTTTCTCTCTGAG  950
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  TAAATGCAAAAGTCATAT-AACTCAC-TTTTTTGTACTTTTCTCTCTGAG  947

seq1  CTTATTTTTAAATGACTATAAAAATCAGTCATCATAAATCTGTACTGAGG  1000
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTTATTTTTAAATGACTATAAAAATCAGTCATCATAATCCTGTACTGAGG  997

seq1  GGTAAGTAATATATATATAAAGATATGGTTTGT-GGTAACTACAGCAAAA  1049
      |||| |||| ||||||||||  |  |||||||| |||||||| ||||| |
seq2  GGTAGGTAA-ATATATATAAGAAATTGGTTTGTGGGTAACTAAAGCAATA  1046

seq1  GGGAAAGACAGCAGCATGAATACAATAG-CAAGGTCTTGTCTACTGT-TG  1097
      || || ||  |||||||| ||   |||| ||||  |||| ||||||| ||
seq2  GGTAAGGAAGGCAGCATGGAT--CATAGCCAAGTCCTTGGCTACTGTGTG  1094

seq1  AAATTAACTTAGCATTAACTGGATCTAGACTGTCCTAAAATAAGATACGA  1147
      ||||  || |||  ||||| |||| | ||| ||| |||   ||||||| |
seq2  AAAT--AC-TAGACTTAAC-GGAT-TGGAC-GTCTTAA---AAGATACAA  1135

seq1  ATTTTAATTCCTGTG  1162
      ||||| |||||||||
seq2  ATTTT-ATTCCTGTG  1149