BAC Information

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BAC

Clone NameB6Ng01-160K02
Chromosome15 (Build37)
Map Location 88,527,069 - 88,657,857
singlet/doubletdoublet
Overlap geneBrd1, Zbed4, Alg12, Creld2
Upstream geneAW049604, LOC100042329, LOC100042340, Zdhhc25
Downstream genePim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160K02.bB6Ng01-160K02.g
ACCDH953953DH953954
length1,121990
definitionDH953953|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K02, 5' end.DH953954|Mus musculus domesticus DNA, BAC clone: B6Ng01-160K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,656,739 - 88,657,857)(88,527,069 - 88,528,059)
sequence
gaattcatgcccacctcccactgggccccaactcctggttatcccatact
tagcagagaccaggcttctagaaaatatgttcagcagcccctgaagctac
atgtcacaatgtgtttacccaaggcagaccacagtgtaggccagaatatc
tcacacacacacacaccactgtcctctactacactggacacctgctcagg
gtcaacttgccatgcacccaccaaggccagtagattctgagtcctcgtgg
ggtcccatctatccctgagtcctcatgggaaaacatgggtccatctatct
tcctgagtccccatgggaagacatgaatccatctctctccctcttgagtc
ctcatgggaaaacatgagtccatctatctccccccgccccccgcccccga
gtcctcatgggaagatgtgtgtacatctatctccctctgagtcctcatgg
aagacatgtgtccatctatctccctctaagccctcatggaagacatgggt
ccatctatctccctttgagtccgaatgggaagatgtgtgtccgtctatct
ccctctgagtctgcatgggaaaacatgcgtccatctatctccctctgagt
cctcatgggaagccctgggtccaactatctccctgatcctcatgggaaga
catgcgtccatgtatctcccagctttggcaggacaggtacaaactgacta
gtggtaatgcccacattctcaatgaaacaaaccaacacgtcctgttcctg
gtgaccttcaatgatcatttttattataagaacaatatcaaaatatacaa
atctgtgtaagaaccaccaagaaatgcagcttttgaaagggcccagttga
gcatcagctgttgtccgagtacgcagcttctccctctgaagtcttcctgg
agaaattggggttcatgttcattgggccacattttctataggtatcctcc
tcataacttaaagggtggagttttggcttctgaatccggatgcccgtcac
aaatctctacgggaggtggcttgttgtgggttttctcctgtgactctgtc
tgaagaacgaatgttcactgagtattgcctctagcttggtgggctagcca
actggagatgagcactgctac
gaattcatcatgcatccactgaaagctactgccattctggaataagaaag
cagaaatctccatttcagtcaggatcaaaggcactggggatcacacatcc
taaagttaagactccttgggactcaccgttgtcactgagaacccagaaaa
gaactgagatgtgcaaacacataacatttcatgacctcgagattagtagc
ccccggcgacaaatggcccagcagagcccacatggctaactaggcttcct
ggcagaagctgccaggtacaaagcaggagctctggacagcagctacatgg
tgaaagctttttctacagtgtcttacagggttaacaaactttctgctgct
ggtagatatgaaccctgaggaggcagaaagccatcctgtgcgtgcaaggc
acctggtattgagacactgagcaatctcctagcagcagagcacagcatgc
catgatcagttcagtgacaaaggatttagacaccagagtctttcactaaa
tgtggctaagaaaagctaaagctatatagtttcagaaacttccaacaaga
actgagataacttcagtttcaatctacttcctgtggcatattaaaattgc
ttcattaaaaccaagggttattggattttaaagtgccattatcaactcat
caaaacaagagggcattgagagaaatttctataaaattactgactgcaaa
ataaaaattaaattaactgggcctactagtacaggtctgtgatttcagct
acttcagaggctgaggtaagaggctaatgagctaaaggcctttattatag
aaaaggttcaagaccaacttgtctcaacattttttgaaaggtcaccaaga
tgtgtcagtgtaaaggtacttgctgtacatgtctaatgcacgctgggaga
gacaatttttttaaccccaccccacccccaacacacacacacattaaaag
gcactccatagtacacagcaacttggcacaaggtgccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_88656739_88657857
seq2: B6Ng01-160K02.b_41_1161 (reverse)

seq1  GTAGCAGTGCTCATCCTCCAGCTGCCT-GCCCACCCAGCCTTGAGGCACT  49
      |||||||||||||| |||||| || || ||||||| || || |||||| |
seq2  GTAGCAGTGCTCAT-CTCCAGTTGGCTAGCCCACCAAG-CTAGAGGCAAT  48

seq1  AACTCAGTG-ACCTTCGTGTCTTCTGACAGAAGTCACAGAGGAAAACCC-  97
       |||||||| || ||||| ||||| ||||| ||||||||  |||||||| 
seq2  -ACTCAGTGAACATTCGT-TCTTCAGACAG-AGTCACAGGAGAAAACCCA  95

seq1  CACACAGCCACCCTCCCGTGAGGATTTGTGACGGGCATCCGGATTCAGAA  147
      ||   ||||| ||||||||   ||||||||||||||||||||||||||||
seq2  CAACAAGCCA-CCTCCCGTAGAGATTTGTGACGGGCATCCGGATTCAGAA  144

seq1  GCC-AAACT-CACCCTTTAAGTTATTGAGAGGATACCTATAGAAAATGTG  195
      ||| ||||| |||||||||||||||   ||||||||||||||||||||||
seq2  GCCAAAACTCCACCCTTTAAGTTATGAGGAGGATACCTATAGAAAATGTG  194

seq1  GCCC-ATGGACATGAACCCC-ATTTCTCCAGGAAGACTTCAGAGGGAGAA  243
      |||| ||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GCCCAATGAACATGAACCCCAATTTCTCCAGGAAGACTTCAGAGGGAGAA  244

seq1  GCTGCGTACTCGGAC-ACAGCTGATGCTC-ACTTGGCCCTTTCAAAAGCT  291
      ||||||||||||||| ||||||||||||| ||| ||||||||||||||||
seq2  GCTGCGTACTCGGACAACAGCTGATGCTCAACTGGGCCCTTTCAAAAGCT  294

seq1  GCATTTCTTGGTGGTTCTTACACAGATTTGTATATTTTGATATTGTTCTT  341
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCATTTCTTGGTGGTTCTTACACAGATTTGTATATTTTGATATTGTTC-T  343

seq1  TATAATAAAAATGATCATTGAAGGTCACCAGGAACAGGACGTGTTGGTTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAAAATGATCATTGAAGGTCACCAGGAACAGGACGTGTTGGTTT  393

seq1  GTTTCATTGAGAATGTGGGCATTACCACTAGTCAGTTTGTACCTGTCCTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGAGAATGTGGGCATTACCACTAGTCAGTTTGTACCTGTCCTG  443

seq1  CCAAAGCTGGGAGATACATGGACGCATGTCTTCCCATGAGGATCAGGGAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTGGGAGATACATGGACGCATGTCTTCCCATGAGGATCAGGGAG  493

seq1  ATAGTTGGACCCAGGGCTTCCCATGAGGACTCAGAGGGAGATAGATGGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGGACCCAGGGCTTCCCATGAGGACTCAGAGGGAGATAGATGGAC  543

seq1  GCATGTTTTCCCATGCAGACTCAGAGGGAGATAGACGGACACACATCTTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTTTCCCATGCAGACTCAGAGGGAGATAGACGGACACACATCTTC  593

seq1  CCATTCGGACTCAAAGGGAGATAGATGGACCCATGTCTTCCATGAGGGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCGGACTCAAAGGGAGATAGATGGACCCATGTCTTCCATGAGGGCT  643

seq1  TAGAGGGAGATAGATGGACACATGTCTTCCATGAGGACTCAGAGGGAGAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGAGATAGATGGACACATGTCTTCCATGAGGACTCAGAGGGAGAT  693

seq1  AGATGTACACACATCTTCCCATGAGGACTCGGGGGCGGGGGGCGGGGGGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTACACACATCTTCCCATGAGGACTCGGGGGCGGGGGGCGGGGGGA  743

seq1  GATAGATGGACTCATGTTTTCCCATGAGGACTCAAGAGGGAGAGAGATGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATGGACTCATGTTTTCCCATGAGGACTCAAGAGGGAGAGAGATGG  793

seq1  ATTCATGTCTTCCCATGGGGACTCAGGAAGATAGATGGACCCATGTTTTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGTCTTCCCATGGGGACTCAGGAAGATAGATGGACCCATGTTTTC  843

seq1  CCATGAGGACTCAGGGATAGATGGGACCCCACGAGGACTCAGAATCTACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGACTCAGGGATAGATGGGACCCCACGAGGACTCAGAATCTACT  893

seq1  GGCCTTGGTGGGTGCATGGCAAGTTGACCCTGAGCAGGTGTCCAGTGTAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTGGGTGCATGGCAAGTTGACCCTGAGCAGGTGTCCAGTGTAG  943

seq1  TAGAGGACAGTGGTGTGTGTGTGTGTGAGATATTCTGGCCTACACTGTGG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACAGTGGTGTGTGTGTGTGTGAGATATTCTGGCCTACACTGTGG  993

seq1  TCTGCCTTGGGTAAACACATTGTGACATGTAGCTTCAGGGGCTGCTGAAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGGGTAAACACATTGTGACATGTAGCTTCAGGGGCTGCTGAAC  1043

seq1  ATATTTTCTAGAAGCCTGGTCTCTGCTAAGTATGGGATAACCAGGAGTTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTAGAAGCCTGGTCTCTGCTAAGTATGGGATAACCAGGAGTTG  1093

seq1  GGGCCCAGTGGGAGGTGGGCATGAATTC  1119
      ||||||||||||||||||||||||||||
seq2  GGGCCCAGTGGGAGGTGGGCATGAATTC  1121

seq1: chr15_88527069_88528059
seq2: B6Ng01-160K02.g_65_1054

seq1  GAATTCATCATGCATCCACTGAAAGCTACTGCCATTCTGGAATAAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGCATCCACTGAAAGCTACTGCCATTCTGGAATAAGAAAG  50

seq1  CAGAAATCTCCATTTCAGTCAGGATCAAAGGCACTGGGGATCACACATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTCCATTTCAGTCAGGATCAAAGGCACTGGGGATCACACATCC  100

seq1  TAAAGTTAAGACTCCTTGGGACTCACCGTTGTCACTGAGAACCCAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAGACTCCTTGGGACTCACCGTTGTCACTGAGAACCCAGAAAA  150

seq1  GAACTGAGATGTGCAAACACATAACATTTCATGACCTCGAGATTAGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGATGTGCAAACACATAACATTTCATGACCTCGAGATTAGTAGC  200

seq1  CCCCGGCGACAAATGGCCCAGCAGAGCCCACATGGCTAACTAGGCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCGACAAATGGCCCAGCAGAGCCCACATGGCTAACTAGGCTTCCT  250

seq1  GGCAGAAGCTGCCAGGTACAAAGCAGGAGCTCTGGACAGCAGCTACATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGCTGCCAGGTACAAAGCAGGAGCTCTGGACAGCAGCTACATGG  300

seq1  TGAAAGCTTTTTCTACAGTGTCTTACAGGGTTAACAAACTTTCTGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCTTTTTCTACAGTGTCTTACAGGGTTAACAAACTTTCTGCTGCT  350

seq1  GGTAGATATGAACCCTGAGGAGGCAGAAAGCCATCCTGTGCGTGCAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATATGAACCCTGAGGAGGCAGAAAGCCATCCTGTGCGTGCAAGGC  400

seq1  ACCTGGTATTGAGACACTGAGCAATCTCCTAGCAGCAGAGCACAGCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTATTGAGACACTGAGCAATCTCCTAGCAGCAGAGCACAGCATGC  450

seq1  CATGATCAGTTCAGTGACAAAGGATTTAGACACCAGAGTCTTTCACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAGTTCAGTGACAAAGGATTTAGACACCAGAGTCTTTCACTAAA  500

seq1  TGTGGCTAAGAAAAGCTAAAGCTATATAGTTTCAGAAACTTCCAACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAAGAAAAGCTAAAGCTATATAGTTTCAGAAACTTCCAACAAGA  550

seq1  ACTGAGATAACTTCAGTTTCAATCTACTTCCTGTGGCATATTAAAATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATAACTTCAGTTTCAATCTACTTCCTGTGGCATATTAAAATTGC  600

seq1  TTCATTAAAACCAAGGGTTATTGGATTTTAAAGTGCCATTATCAACTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAAAACCAAGGGTTATTGGATTTTAAAGTGCCATTATCAACTCAT  650

seq1  CAAAACAAGAGGGCATTGAGAGAAATTTCTATAAAATTACTGACTGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAGAGGGCATTGAGAGAAATTTCTATAAAATTACTGACTGCAAA  700

seq1  ATAAAAATTAAATTAACTGGGCCTACTAGTACAGGTCTGTGATTTCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTAAATTAACTGGGCCTACTAGTACAGGTCTGTGATTTCAGCT  750

seq1  ACTTCAGAGGCTGAGGTAAGAGGCTAATGAGCTAAAGGCCTTTATTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGAGGCTGAGGTAAGAGGCTAATGAGCTAAAGGCCTTTATTATAG  800

seq1  AAAAGGTTCAAGACCAACTTGTCTCAACATTTTTTGAAAGGTTCACCAAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGGTTCAAGACCAACTTGTCTCAACATTTTTTGAAAGG-TCACCAAG  849

seq1  ATGTGTCAGTGTAAAGGTACTTGCTGTACATGTCTAATGCACGCTGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGTGTAAAGGTACTTGCTGTACATGTCTAATGCACGCTGGGAG  899

seq1  AGACAATTTTTTAACCCCAACCCCACCCCCAACACACACACACATTAAAA  950
      |||||||||||| | ||| |||||||||||||||||||||||||||||||
seq2  AGACAATTTTTTTAACCCCACCCCACCCCCAACACACACACACATTAAAA  949

seq1  GGCACTCCATAGTACACAGCAACTTGCCACAAGGTGCCAGT  991
      |||||||||||||||||||||||||| ||||||||||||||
seq2  GGCACTCCATAGTACACAGCAACTTGGCACAAGGTGCCAGT  990