BAC Information

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BAC

Clone NameB6Ng01-160M10
Chromosome15 (Build37)
Map Location 84,119,812 - 84,239,573
singlet/doubletdoublet
Overlap geneParvb, Parvg, LOC382988, 1810041L15Rik
Upstream geneLOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50
Downstream geneLdoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M10.bB6Ng01-160M10.g
ACCDH954063DH954064
length5901,146
definitionDH954063|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M10, 5' end.DH954064|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,119,812 - 84,120,406)(84,238,414 - 84,239,573)
sequence
tatatatatgagtactatcttcctttttaaaagatttatttatttttcat
ttatatgagtacactgtcactgtcttaagacacacactagaagagggcat
ctgatcccggtacagatggttgtgagccaccatgtggttgctgggaattg
aactcaggaccatctggaagagcagtcggtgctcttaaccgctgagccat
ctctccagcccccacatgagttctatcttaacatcatttctacctttcca
actcttcccatgtcccccagtccctctcgagttcatgactgcttctttat
tatttttatccccgctcccggtctctgtctgtctgtctgtctgtctgtct
ctctgtgtacaacctaatgagtccatttcctgctgtttgtgtgtgtgtgt
gtgtgtgtgtgtgtgcacatgtagggctgaccactcggtactgaataatc
aggtagggggaatcctccttcctggaggagactggtattccttctctcag
cagcccatggttcttcatctaggggtgggtggggctttgagatgtctccg
tctgtgtttggcatgtcacctggcgttgtcatcgttgggt
gaattcaaatccccatactgctgtcatggctggggaatcttagagaagac
tttggtccctcagaggtccctctctctgcccaatttccaccttagacacc
acaggtctgtttccttccatcttagcactgtgcagagcagaggggacctt
tagctgccccttgtcctgcgctggctttttggagtgtttctagctccagg
cagggccaccacccctcctgctctggatgccaaacagcatctggagagag
cggccctgctccctccccgcctcctcagcccccaggctgctgccatggga
accaccaggaacagcctggttctcagagccctgacatgggggctgcaaga
gagagagaaatctggggagagatgggtgcctgggaccagagcccacctag
acatctgtctcccatgagacttcagcctgtaagtgagttgggctcttggc
ctttttcctctggcatgaattctctgctgtgccctgacacttccaggcaa
agctagtgtccattaataaaaggctcagtgcttggctgtcagtcattcac
acctttgtgtggcagtagttggcaaagagatggagttgcagaaagaagct
gagacttctctgtttaggatttgctgggtactgagcccaagtactgactg
gtactgagttctaagcacctctcttgaggctgtcaagctccgtgtgcaca
gcacggcagagccttaccaagagccattcctccgcaaactcccactgccc
cgactcccaagagaagtcttccgtccaagaaattggccagctgagacaca
ttctcctgaatagaaagaggaagtggggcttattgactctgcttctgccc
tggccagccttggaagtcgaggagagacttaagacctggagatggacggg
gcttcccatagaccacgcagggaagcagacccaggagatcagccagctcc
attcccagcacagataagcaggaggagctcagggcctctggagggagggt
ttcctgctgcctctctagctggtcagcaagctcttctaacacccttgctg
cccatgcactcaagcagatgcccatggcagggaaacgactgaagtgggtt
caccttgagcagttaataactagtcctttgaacggctcaggccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84119812_84120406
seq2: B6Ng01-160M10.b_47_642

seq1  GAATTCTATATATATGAGTACTATCTTCCTTTTTAAAAGATTTATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATATATGAGTACTATCTTCCTTTTTAAAAGATTTATTTATT  50

seq1  TTTCATTTATATGAGTACACTGTCACTGTCTTAAGACACACACTAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTATATGAGTACACTGTCACTGTCTTAAGACACACACTAGAAGA  100

seq1  GGGCATCTGATCCCGGTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTGATCCCGGTACAGATGGTTGTGAGCCACCATGTGGTTGCTGG  150

seq1  GAATTGAACTCAGGACCATCTGGAAGAGCAGTCGGTGCTCTTAACCGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTCAGGACCATCTGGAAGAGCAGTCGGTGCTCTTAACCGCTG  200

seq1  AGCCATCTCTCCAGCCCCCACATGAGTTCTATCTTAACATCATTTCTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCTCCAGCCCCCACATGAGTTCTATCTTAACATCATTTCTACC  250

seq1  TTTCCAACTCTTCCCATGTCCCCCAGTCCCTCTCGAGTTCATGACTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACTCTTCCCATGTCCCCCAGTCCCTCTCGAGTTCATGACTGCTT  300

seq1  CTTTATTATTTTTATCCCCGCTCCCGGTCTCTGTCTGTCTGTCTGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATTTTTATCCCCGCTCCCGGTCTCTGTCTGTCTGTCTGTCTGT  350

seq1  CTGTCTCTCTGTGTACAACCTAATGAGTCCATTTCCTGCTGTTTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGTGTACAACCTAATGAGTCCATTTCCTGCTGTTTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGCACATGTAGGGCTGACCACTCGGTACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGCACATGTAGGGCTGACCACTCGGTACTGA  450

seq1  ATAATCAGGTAGGGGGAATCCTCCTTCCTGGAGGAGACTGGTATTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGGTAGGGGGAATCCTCCTTCCTGGAGGAGACTGGTATTCCTTC  500

seq1  TCTCAGCAGCCCATGGTTCTTCATCTAGGGGTGGGTGGGGCTTTGAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAGCCCATGGTTCTTCATCTAGGGGTGGGTGGGGCTTTGAGATG  550

seq1  TCTCCGTCTGTG-TTGGCATGTCACCTGGCGTTGTCATCGTTGGGT  595
      |||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTCCGTCTGTGTTTGGCATGTCACCTGGCGTTGTCATCGTTGGGT  596

seq1: chr15_84238414_84239573
seq2: B6Ng01-160M10.g_68_1213 (reverse)

seq1  CAGGGCCTGGGCCGTTTCAAGGGACTAGTTTATTAACTGCTCAA-GTGAC  49
      ||||||||| |||| ||||| ||||||| ||||||||||||||| |||| 
seq2  CAGGGCCTGAGCCG-TTCAAAGGACTAG-TTATTAACTGCTCAAGGTGA-  47

seq1  ACCCACTTCAGTCTGTTCCCTGCCATGGGCATCTGCTTGAGTGGGCATGG  99
      |||||||||||||  |||||||||||||||||||||||||||  ||||||
seq2  ACCCACTTCAGTCGTTTCCCTGCCATGGGCATCTGCTTGAGT--GCATGG  95

seq1  GCCAGCCAGGGTGTTGAGAAGAGGCTGCTGACCAGCCTAGAAGAGGCAGG  149
      | |||| |||||||| |||||||  |||||||||| |||| ||||||| |
seq2  G-CAGCAAGGGTGTT-AGAAGAGCTTGCTGACCAG-CTAG-AGAGGCA-G  140

seq1  CAGGAAACCCTCCACTCCAGAAGGCCCTGGAGCTCCCTCCTGCTTATCTG  199
      ||||||||||||| |||||| ||||||| ||||| |||||||||||||||
seq2  CAGGAAACCCTCC-CTCCAG-AGGCCCT-GAGCT-CCTCCTGCTTATCTG  186

seq1  TGCTGGGAATGGAGCTTGGCCTGATCTCCTGGGTCTGCTTCCCTGCGTGG  249
      ||||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  TGCTGGGAATGGAGCT--GGCTGATCTCCTGGGTCTGCTTCCCTGCGTGG  234

seq1  TCTATGGGAAGCCCCGTCCATCTCCAGGTCTTAAGTCTCTCCTCGACTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGAAGCCCCGTCCATCTCCAGGTCTTAAGTCTCTCCTCGACTTC  284

seq1  CAAGGCTGGCCAGGGCAGAAGCAGAGTCAATAAG-CCCACTTCCTCTTTC  348
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAGGCTGGCCAGGGCAGAAGCAGAGTCAATAAGCCCCACTTCCTCTTTC  334

seq1  TATTCAGGAGAATGTGTCTCAGCTGGCCAATTTCTTGGACGGAAGACTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGGAGAATGTGTCTCAGCTGGCCAATTTCTTGGACGGAAGACTTC  384

seq1  TCTTGGGAGTCGGGGCAGTGGGAGTTTGCGGAGGAATGGCTCTTGGTAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAGTCGGGGCAGTGGGAGTTTGCGGAGGAATGGCTCTTGGTAAG  434

seq1  GCTCTGCCGTGCTGTGCACACGGAGCTTGACAGCCTCAAGAGAGGTGCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCGTGCTGTGCACACGGAGCTTGACAGCCTCAAGAGAGGTGCTT  484

seq1  AGAACTCAGTACCAGTCAGTACTTGGGCTCAGTACCCAGCAAATCCTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGTACCAGTCAGTACTTGGGCTCAGTACCCAGCAAATCCTAAA  534

seq1  CAGAGAAGTCTCAGCTTCTTTCTGCAACTCCATCTCTTTGCCAACTACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGTCTCAGCTTCTTTCTGCAACTCCATCTCTTTGCCAACTACTG  584

seq1  CCACACAAAGGTGTGAATGACTGACAGCCAAGCACTGAGCCTTTTATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAAGGTGTGAATGACTGACAGCCAAGCACTGAGCCTTTTATTAA  634

seq1  TGGACACTAGCTTTGCCTGGAAGTGTCAGGGCACAGCAGAGAATTCATGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTAGCTTTGCCTGGAAGTGTCAGGGCACAGCAGAGAATTCATGC  684

seq1  CAGAGGAAAAAGGCCAAGAGCCCAACTCACTTACAGGCTGAAGTCTCATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAAAAGGCCAAGAGCCCAACTCACTTACAGGCTGAAGTCTCATG  734

seq1  GGAGACAGATGTCTAGGTGGGCTCTGGTCCCAGGCACCCATCTCTCCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGATGTCTAGGTGGGCTCTGGTCCCAGGCACCCATCTCTCCCCA  784

seq1  GATTTCTCTCTCTCTTGCAGCCCCCATGTCAGGGCTCTGAGAACCAGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTCTCTCTTGCAGCCCCCATGTCAGGGCTCTGAGAACCAGGCT  834

seq1  GTTCCTGGTGGTTCCCATGGCAGCAGCCTGGGGGCTGAGGAGGCGGGGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTGGTTCCCATGGCAGCAGCCTGGGGGCTGAGGAGGCGGGGAG  884

seq1  GGAGCAGGGCCGCTCTCTCCAGATGCTGTTTGGCATCCAGAGCAGGAGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGCCGCTCTCTCCAGATGCTGTTTGGCATCCAGAGCAGGAGGG  934

seq1  GTGGTGGCCCTGCCTGGAGCTAGAAACACTCCAAAAAGCCAGCGCAGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCCCTGCCTGGAGCTAGAAACACTCCAAAAAGCCAGCGCAGGAC  984

seq1  AAGGGGCAGCTAAAGGTCCCCTCTGCTCTGCACAGTGCTAAGATGGAAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCAGCTAAAGGTCCCCTCTGCTCTGCACAGTGCTAAGATGGAAGG  1034

seq1  AAACAGACCTGTGGTGTCTAAGGTGGAAATTGGGCAGAGAGAGGGACCTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGACCTGTGGTGTCTAAGGTGGAAATTGGGCAGAGAGAGGGACCTC  1084

seq1  TGAGGGACCAAAGTCTTCTCTAAGATTCCCCAGCCATGACAGCAGTATGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGACCAAAGTCTTCTCTAAGATTCCCCAGCCATGACAGCAGTATGG  1134

seq1  GGATTTGAATTC  1160
      ||||||||||||
seq2  GGATTTGAATTC  1146