BAC Information

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BAC

Clone NameB6Ng01-161O12
Chromosome15 (Build37)
Map Location 49,939,768 - 50,046,583
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039600, LOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161O12.bB6Ng01-161O12.g
ACCDH954891DH954892
length1,1121,082
definitionDH954891|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O12, 5' end.DH954892|Mus musculus domesticus DNA, BAC clone: B6Ng01-161O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,045,447 - 50,046,583)(49,939,768 - 49,940,866)
sequence
gaattctagttttttatatttgatacaagtatgagttgaggtttttcaaa
ttataaacatacaaatatacaaagttacacaactatacacaaggtaaatt
ttgtaagattaatatctcttagtagattaaggagatttttatattattaa
cttgcataggacctttgtaattttatccaaagccaatagtcaattctatc
atatctgaaaatgtgttggtccccattttaaggtaatgccttttccaatg
ttttatagaataaaaaataaggtactaatatttgaagatcactgatactg
caccttgcattattttatttagaagaaaattgtttaagctatactcataa
aaattgcattggttactatttgttgatgtgataaaatactatcaccaaag
caactaatggaactaagagtttattttaacttataattccagatggtaag
aatctaaggcagatgaaataggtaagaaaaatgggtggaactggatgctc
aatgcctacaccttgaggcattttgatgtgccacaagcaccaagtatttg
tacaagaaacagtactgaaagtggtgaatctttggaacccataagatgat
ccctggtagcatgtttgcttgaactatcccaaatctctcaaacagtctta
ttaattgcagactgagattttaagttgtaaaacctattaaggacatttct
tattaaggccactataattattaaaaatattgataattttaataaatatg
aaccattagtacacattaggttaaaattaatttggttcagtgatttgtta
tcatccttttaatactcatattacaatattaattttagaaagttttatat
atgtacttatttttcagttggtctatttttacaagaaaatattgacatgc
caataatcattcttcccttttatcctgagtcattagcacataagatagaa
agaaccagatacagaaagtctctgaaacagtgttcagaaatggctgtact
acagacaagaacatgcagcaaaaatatgatgtaacttgaaagtaaatttc
atggtctcataccacacatgaacacagtcactaatgactgcagaaagaaa
gacagcgtctcc
gaattcttacacagaatcaaggaaacaaaggcattatgaggttggacaga
gaccaagatgtagatctgagaagtccaatagtgaagagaagatccaaaaa
ttagtctatgcaaaggcagatgcctcataattgccagaagggtcaaaagc
atgcaacagatggctctggaaaaactgagtgtgtacctggagaagaacta
attccatcaagaattcagttcacagtggacaacaactgaattttaatggg
tcaatggcttgaatgtaaggcattaaactgaatcaacttgataaaaacag
agaaaaatgcttcatcctatagataaagaacatttttaaaagttatagaa
acttttaaaaaagtacactgacaacaaaggaaataggatcaagaattacc
aaagagattccataacatttcaaaaaatttaatatacagtgaaaccacca
tggaagcccatacggagctttctcataaaaactagaaataggactatacc
actgggctgcagcatagcacagcttataacttaaggagttcagttaaaat
ctcctagatattccttcaaatccatatttatcaatgtccttctctcggtt
gtcaggatatgatgtcaagccttggtggccatcagcagataaacaaaaat
gaaaggttgatatttatatgcaaaagtggctgtgatggtcatttattatc
ttaagaagaaaccagtcttggaaacaagcatgctgtatttcatctcatat
aatgcatgcagattttaatttatgtgtgaccgggtatgtgggtcatgaaa
gtagacaagggagaaaaaagaggaaggaatggcgaaaatagaattgagta
catgtatcccaaaagcagaaacagtgctactcaaggaaaaggagtcaggg
acatacacaggaaacagcagtcggggaagagatgaacataacagtgtgtg
cataaagatatgcaaagtgaggacaagctatgtgtttattttaaaatata
gtacatgtacactgtcagctgtataatgtacaaggttgtcatattcactt
ttatttatacatgcttgtgtacaactaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50045447_50046583
seq2: B6Ng01-161O12.b_49_1160 (reverse)

seq1  GGAGACGCTGGTTCTTTCTCTCCTGGCAGTCATTAGTTGACTGTTGTTCA  50
      ||||||||||  ||||||| ||   ||||||||||| |||||| ||||||
seq2  GGAGACGCTG--TCTTTCTTTC--TGCAGTCATTAG-TGACTG-TGTTCA  44

seq1  TTGTGTGGGTATGGAGACCCATGAAAATTTTACCTTTCAAAGTTAACATC  100
       ||||| ||||| |||| ||||||||  |||| ||||| ||||| |||||
seq2  -TGTGT-GGTAT-GAGA-CCATGAAA--TTTA-CTTTC-AAGTT-ACATC  85

seq1  ATATTTTTGCTGCCATTGTTCTTGTCTTGGTAGTACAGCCATTTCTTGGA  150
      |||||||||||||   |||||||||||  |||||||||||||||||  ||
seq2  ATATTTTTGCTGC--ATGTTCTTGTCT--GTAGTACAGCCATTTCT--GA  129

seq1  ACACTGTTTCAGAGACTTTCTGGTATCTTGGTTCTTTCTATCTTTATGTG  200
      ||||||||||||||||||||| ||||| |||||||||||||| |||||||
seq2  ACACTGTTTCAGAGACTTTCT-GTATC-TGGTTCTTTCTATC-TTATGTG  176

seq1  CCTAATGACTCAGGATAAAAGGGAAGAATGATTATTGGCATGTCAATATT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAATGACTCAGGATAAAAGGGAAGAATGATTATTGGCATGTCAATATT  225

seq1  TTCTTGTAAAAATAGACCAACTGAAAAATAAGTACATATATAAAACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAAAAATAGACCAACTGAAAAATAAGTACATATATAAAACTTTC  275

seq1  TAAAATTAATATTGTAATATGAGTATTAAAAGGATGATAACAAATCACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAATATTGTAATATGAGTATTAAAAGGATGATAACAAATCACTG  325

seq1  AACCAAATTAATTTTAACCTAATGTGTACTAATGGTTCATATTTATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATTAATTTTAACCTAATGTGTACTAATGGTTCATATTTATTAAA  375

seq1  ATTATCAATATTTTTAATAATTATAGTGGCCTTAATAAGAAATGTCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCAATATTTTTAATAATTATAGTGGCCTTAATAAGAAATGTCCTTA  425

seq1  ATAGGTTTTACAACTTAAAATCTCAGTCTGCAATTAATAAGACTGTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTTTACAACTTAAAATCTCAGTCTGCAATTAATAAGACTGTTTGA  475

seq1  GAGATTTGGGATAGTTCAAGCAAACATGCTACCAGGGATCATCTTATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTGGGATAGTTCAAGCAAACATGCTACCAGGGATCATCTTATGGG  525

seq1  TTCCAAAGATTCACCACTTTCAGTACTGTTTCTTGTACAAATACTTGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGATTCACCACTTTCAGTACTGTTTCTTGTACAAATACTTGGTG  575

seq1  CTTGTGGCACATCAAAATGCCTCAAGGTGTAGGCATTGAGCATCCAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGCACATCAAAATGCCTCAAGGTGTAGGCATTGAGCATCCAGTTC  625

seq1  CACCCATTTTTCTTACCTATTTCATCTGCCTTAGATTCTTACCATCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTTTTCTTACCTATTTCATCTGCCTTAGATTCTTACCATCTGGA  675

seq1  ATTATAAGTTAAAATAAACTCTTAGTTCCATTAGTTGCTTTGGTGATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGTTAAAATAAACTCTTAGTTCCATTAGTTGCTTTGGTGATAGT  725

seq1  ATTTTATCACATCAACAAATAGTAACCAATGCAATTTTTATGAGTATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCACATCAACAAATAGTAACCAATGCAATTTTTATGAGTATAGC  775

seq1  TTAAACAATTTTCTTCTAAATAAAATAATGCAAGGTGCAGTATCAGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATTTTCTTCTAAATAAAATAATGCAAGGTGCAGTATCAGTGAT  825

seq1  CTTCAAATATTAGTACCTTATTTTTTATTCTATAAAACATTGGAAAAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATATTAGTACCTTATTTTTTATTCTATAAAACATTGGAAAAGGC  875

seq1  ATTACCTTAAAATGGGGACCAACACATTTTCAGATATGATAGAATTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTTAAAATGGGGACCAACACATTTTCAGATATGATAGAATTGACT  925

seq1  ATTGGCTTTGGATAAAATTACAAAGGTCCTATGCAAGTTAATAATATAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCTTTGGATAAAATTACAAAGGTCCTATGCAAGTTAATAATATAAA  975

seq1  AATCTCCTTAATCTACTAAGAGATATTAATCTTACAAAATTTACCTTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTTAATCTACTAAGAGATATTAATCTTACAAAATTTACCTTGTG  1025

seq1  TATAGTTGTGTAACTTTGTATATTTGTATGTTTATAATTTGAAAAACCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTGTGTAACTTTGTATATTTGTATGTTTATAATTTGAAAAACCTC  1075

seq1  AACTCATACTTGTATCAAATATAAAAAACTAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||
seq2  AACTCATACTTGTATCAAATATAAAAAACTAGAATTC  1112

seq1: chr15_49939768_49940866
seq2: B6Ng01-161O12.g_70_1151

seq1  GAATTCTTACACAGAATCAAGGAAACAAAGGCATTATGAGGTTGGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACACAGAATCAAGGAAACAAAGGCATTATGAGGTTGGACAGA  50

seq1  GACCAAGATGTAGATCTGAGAAGTCCAATAGTGAAGAGAAGATCCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGATGTAGATCTGAGAAGTCCAATAGTGAAGAGAAGATCCAAAAA  100

seq1  TTAGTCTATGCAAAGGCAGATGCCTCATAATTGCCAGAAGGGTCAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTATGCAAAGGCAGATGCCTCATAATTGCCAGAAGGGTCAAAAGC  150

seq1  ATGCAACAGATGGCTCTGGAAAAACTGAGTGTGTACCTGGAGAAGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACAGATGGCTCTGGAAAAACTGAGTGTGTACCTGGAGAAGAACTA  200

seq1  ATTCCATCAAGAATTCAGTTCACAGTGGACAACAACTGAATTTTAATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCAAGAATTCAGTTCACAGTGGACAACAACTGAATTTTAATGGG  250

seq1  TCAATGGCTTGAATGTAAGGCATTAAACTGAATCAACTTGATAAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGCTTGAATGTAAGGCATTAAACTGAATCAACTTGATAAAAACAG  300

seq1  AGAAAAATGCTTCATCCTATAGATAAAGAACATTTTTAAAAGTTATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGCTTCATCCTATAGATAAAGAACATTTTTAAAAGTTATAGAA  350

seq1  ACTTTTAAAAAAGTACACTGACAACAAAGGAAATAGGATCAAGAATTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAAAAGTACACTGACAACAAAGGAAATAGGATCAAGAATTACC  400

seq1  AAAGAGATTCCATAACATTTCAAAAAATTTAATATACAGTGAAACCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATTCCATAACATTTCAAAAAATTTAATATACAGTGAAACCACCA  450

seq1  TGGAAGCCCATACGGAGCTTTCTCATAAAAACTAGAAATAGGACTATACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCCATACGGAGCTTTCTCATAAAAACTAGAAATAGGACTATACC  500

seq1  ACTGGGCTGCAGCATAGCACAGCTTATAACTTAAGGAGTTCAGTTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGCAGCATAGCACAGCTTATAACTTAAGGAGTTCAGTTAAAAT  550

seq1  CTCCTAGATATTCCTTCAAATCCATATTTATCAATGTCCTTCTCTCGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGATATTCCTTCAAATCCATATTTATCAATGTCCTTCTCTCGGTT  600

seq1  GTCAGGATATGATGTCAAGCCTTGGTGGCCATCAGCAGATAAACAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGATATGATGTCAAGCCTTGGTGGCCATCAGCAGATAAACAAAAAT  650

seq1  GAAAGGTTGATATTTATATGCAAAAGTGGCTGTGATGGTCATTTATTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTTGATATTTATATGCAAAAGTGGCTGTGATGGTCATTTATTATC  700

seq1  TTAAGAAGAAACCAGTCTTGGAAACAAGCATGCTGTATTTCATCTCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGAAACCAGTCTTGGAAACAAGCATGCTGTATTTCATCTCATAT  750

seq1  AATGCATGCAGATTTTAATTTATGTGTGACCGGGTATGTGGGTCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGCAGATTTTAATTTATGTGTGACCGGGTATGTGGGTCATGAAA  800

seq1  GTAGACAAGGGAG-AAAAAGAGGAAGGAATGGCGAAAATAGAATTGAGTA  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAGGGAGAAAAAAGAGGAAGGAATGGCGAAAATAGAATTGAGTA  850

seq1  CATGTATCCCAAAAGCAGAAACAGTGCTACTCAAGGAAAAAGGAAGTCAG  899
      ||||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  CATGTATCCCAAAAGCAGAAACAGTGCTACTCAAGGAAAA--GGAGTCAG  898

seq1  GGACATACACAGGAAACAGCAGTCGGGGAAGGAGATGAACAATAACAGTG  949
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GGACATACACAGGAAACAGCAGTCGGGGAA-GAGATGAAC-ATAACAGTG  946

seq1  TGTGCATAAAGATATGCCAAAGTGAAGGACACAAGCTTATGTGGTATATT  999
      |||||||||||||||| |||||||| |   |||||| ||||| || ||||
seq2  TGTGCATAAAGATATG-CAAAGTGAGG---ACAAGC-TATGT-GTTTATT  990

seq1  TAAAAATATTAGTACATGTACACCTGTTCAAGCTGGTATAAATGTAC-AG  1048
      | |||||| ||||||||||||| ||||   |||| |||| ||||||| ||
seq2  TTAAAATA-TAGTACATGTACA-CTGT--CAGCT-GTAT-AATGTACAAG  1034

seq1  GTTGTCATA-TCACTTTTATTTATAACATGCTTTGTGTTACAAACTAATA  1097
      ||||||||| |||||||||||||| |||||| ||||| ||| ||||||||
seq2  GTTGTCATATTCACTTTTATTTAT-ACATGC-TTGTG-TAC-AACTAATA  1080

seq1  AA  1099
      ||
seq2  AA  1082