BAC Information

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BAC

Clone NameB6Ng01-162D04
Chromosome15 (Build37)19 (Build37)
Map Location 83,441,011 - 83,441,04640,537,096 - 40,537,873
singlet/doubletsingletsinglet
Overlap geneScube1
Upstream geneBC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12
Downstream geneMpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D04.bB6Ng01-162D04.g
ACCDH955095DH955096
length151778
definitionDH955095|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D04, 5' end.DH955096|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,441,011 - 83,441,046)(40,537,096 - 40,537,873)
sequence
cagttttaggggacccaacacccactcatgcctctgcgggcagcgacatt
cctttggacaaacccacacatatacaaacagatatacacaaaattcagtg
aaaataaaatcgagagagagaaagaggaagaagaagaggaggaggaggag
g
gaattctccttagcagagaagtccatgaacatccccagaggtatgtcccg
aggagtagtgagctagtgagctgcaacctaggcatgctaggcatcactat
tcgaaccagcttgaactaagctttaaaaatgtgttctttgtacagattgc
tgctggagagggacctcaaagcagccactaatcaatcagccatagcactt
tggcttccaagagtttcctagcttggctatactcatcaccatactaaatg
ggagaaaacagtatttagaaagaggaaagtctccgactcgacagcaggga
tctaccctcatgtttgagaagttagcagttctcatagcatgacctgtgag
cctaacaccattcagaactctggagacggtcttctcacgaaaggcccatc
gttacacgccctgaggtggtgggggtggcagttagaggaggaaggagaga
ctgtaaactgacccagcctctgctgtcaaggaagaagcagagagcatata
accatataagggaaaagtggctccctgttgcatctgcttgcaaagagtta
aggaatgagatacagcgcatggtctgagaagggtgatgatctgtgttctg
gccctgctgtggatgggctgtggggccttgggcaagctcctgcacccctc
tgactgtttctagtttctcctaaaagcaagggcatactacaggtatctga
gtttttattcagagtgatgttccacaatactataatatttagaacactgc
tgtgggaaattacagacaggcagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83441011_83441046
seq2: B6Ng01-162D04.b_163_202 (reverse)

seq1  CCTCCTCCTCCTCCTCTTCTTCTTC----TTCTCTCTCTC  36
      |||||||||||||||||||||||||    |||||||||||
seq2  CCTCCTCCTCCTCCTCTTCTTCTTCCTCTTTCTCTCTCTC  40

seq1: chr19_40537096_40537873
seq2: B6Ng01-162D04.g_67_844

seq1  GAATTCTCCTTAGCAGAGAAGTCCATGAACATCCCCAGAGGTATGTCCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAGCAGAGAAGTCCATGAACATCCCCAGAGGTATGTCCCG  50

seq1  AGGAGTAGTGAGCTAGTGAGCTGCAACCTAGGCATGCTAGGCATCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGTGAGCTAGTGAGCTGCAACCTAGGCATGCTAGGCATCACTAT  100

seq1  TCGAACCAGCTTGAACTAAGCTTTAAAAATGTGTTCTTTGTACAGATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACCAGCTTGAACTAAGCTTTAAAAATGTGTTCTTTGTACAGATTGC  150

seq1  TGCTGGAGAGGGACCTCAAAGCAGCCACTAATCAATCAGCCATAGCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGAGGGACCTCAAAGCAGCCACTAATCAATCAGCCATAGCACTT  200

seq1  TGGCTTCCAAGAGTTTCCTAGCTTGGCTATACTCATCACCATACTAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCCAAGAGTTTCCTAGCTTGGCTATACTCATCACCATACTAAATG  250

seq1  GGAGAAAACAGTATTTAGAAAGAGGAAAGTCTCCGACTCGACAGCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACAGTATTTAGAAAGAGGAAAGTCTCCGACTCGACAGCAGGGA  300

seq1  TCTACCCTCATGTTTGAGAAGTTAGCAGTTCTCATAGCATGACCTGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCATGTTTGAGAAGTTAGCAGTTCTCATAGCATGACCTGTGAG  350

seq1  CCTAACACCATTCAGAACTCTGGAGACGGTCTTCTCACGAAAGGCCCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACCATTCAGAACTCTGGAGACGGTCTTCTCACGAAAGGCCCATC  400

seq1  GTTACACGCCCTGAGGTGGTGGGGGTGGCAGTTAGAGGAGGAAGGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACGCCCTGAGGTGGTGGGGGTGGCAGTTAGAGGAGGAAGGAGAGA  450

seq1  CTGTAAACTGACCCAGCCTCTGCTGTCAAGGAAGAAGCAGAGAGCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACTGACCCAGCCTCTGCTGTCAAGGAAGAAGCAGAGAGCATATA  500

seq1  ACCATATAAGGGAAAAGTGGCTCCCTGTTGCATCTGCTTGCAAAGAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATAAGGGAAAAGTGGCTCCCTGTTGCATCTGCTTGCAAAGAGTTA  550

seq1  AGGAATGAGATACAGCGCATGGTCTGAGAAGGGTGATGATCTGTGTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGAGATACAGCGCATGGTCTGAGAAGGGTGATGATCTGTGTTCTG  600

seq1  GCCCTGCTGTGGATGGGCTGTGGGGCCTTGGGCAAGCTCCTGCACCCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGTGGATGGGCTGTGGGGCCTTGGGCAAGCTCCTGCACCCCTC  650

seq1  TGACTGTTTCTAG-TTCTCCAAAAAGCAAGGGCATACTACAGGTATCTGA  699
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TGACTGTTTCTAGTTTCTCCTAAAAGCAAGGGCATACTACAGGTATCTGA  700

seq1  GTTCTTATTCAAGAGTGATGTTCCACAATACTATAATATTTAGAACACTT  749
      ||| |||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GTTTTTATTC-AGAGTGATGTTCCACAATACTATAATATTTAGAACAC-T  748

seq1  GCTGTGGG-AATTACAGACAGGCAGGGAGG  778
      |||||||| |||||||||||||||||||||
seq2  GCTGTGGGAAATTACAGACAGGCAGGGAGG  778