BAC Information

Click to search

BAC

Clone NameB6Ng01-162E17
Chromosome15 (Build37)
Map Location 56,024,779 - 56,172,961
singlet/doubletdoublet
Overlap genenone
Upstream geneDepdc6, Col14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162E17.bB6Ng01-162E17.g
ACCDH955169DH955170
length1,1111,157
definitionDH955169|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E17, 5' end.DH955170|Mus musculus domesticus DNA, BAC clone: B6Ng01-162E17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,171,847 - 56,172,961)(56,024,779 - 56,025,937)
sequence
gaattcagtaattgctgagtatctttatagctaggctttagtaagcaaat
ggcaggacagaggaattcatctatctaatcactctgtaccccaaaaaagg
gcatatgtctttcaaaaactaactgatttattaagataaaatataacata
catgaaaatatcaggatacaaagaatctagcagaagaattttgatcaagc
acatattgctgaaacaacactgggaagagaaacccagtttgtttgtttgt
ttgtttgtttgtttgtttgtagtaagtgaaaatttatagaaagtatcatt
aggaacaaagaagctgaggaaaaggagtgccatgaggtcttcccaagtgg
agaagtagagattggaagaacctgtcaggaaagaaggctgtgagcaacat
tctagatggacctggaacagtgacagattgaaaatgtgcaggatgtagat
cacaaaagaccttagaaggatgagtctgttatgggacaagcggtgatcaa
gacaccttgggcgaatagagttggtagagagtgaatgagtagtagatccc
cagtcagtgaaagaggaacaagaggtaaggtaacatgtactgattctaag
gactgaagcagacttcagaaatgcactggagtggaagtcctcaatgaaaa
ctttcctacgcaaagttctactgaaaggtgatgcttaaagggaagcatcc
ctgtgcattttcttgaagtgatattatttcaataaattgtgttgataatc
aataacttcccagtcaactgttctcaggaataacactttcaactaaaaat
aattgtgaattatggtctcattctaactgatatggaatgattccaagtgt
tatttactgaataaagattaccattttattccttcattatctgcctattt
ggcttaagaaatgcatagatcaaatctggattaatagatattaattcacc
acttgaaatgtaaataaataaataaaataaaatagatattaatttgtttg
tacccagggatctagtgttttaatggagggcaataaagacaaaaagtgta
tgcttctttttcagaaaatacctgatctttctttggtattgagagaaggt
ggagggaggag
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttcttgaggccaccttcttgagttatttatatatattggatattagtctc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaactttt
tgaggtcccatttgtcgattctccaacttacagcacaagccattgatgtt
ctattcaggaatttccccctgtggccttatcttttccccactttcccact
tttgcagtgtatattttgctatgctatttagatcttggttcctatgcggt
ttggtggctggtgagcactaatgtttttcttatgactggttttggttctg
ttagttactgagggaaaactgggcaggaattttggaagaaaacatgaaga
aatataggtaaatggtcccctggggttgtggtcaaaccattcatatttaa
cccatgtcctgataatttatcattaagacagtagatatcatctctttgct
ttcctctctctgtgtgttgtagaaacaatttttttttgccttgtaagaat
aaatgcccttgctgccatattcttctgcctcacatataagcatatatgtt
tatcagtaaactgaatacatatgcacagggtccataacatacataataat
tattaaatatgcacataagtcaaatagtaaaaatcccataaaagataaga
tgagcactcactcgtctaagtattttaatatttatcaatctatttctaat
tcaattagaataatttttaaaaatcactaattagtgcatatgactattct
gattgttctctatctcttctgaggagataattatatgtcctaccaatttt
tttctcacttatattggatcagattatggaatgattttgaccaacctact
tttcactgtataaaggtaggaacatgagaatatttagggttcttgaataa
gtctggacttttcttactcttttttaatattaaccaatgagcagaatgtt
tcaaaggagcttatttttctccacttggatgattgaatgaagcattactt
aatatgttaatcattagaaacaatttttttggcaggcttgtgattccagg
gttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56171847_56172961
seq2: B6Ng01-162E17.b_45_1155 (reverse)

seq1  CTCCT-CCTCCACC-TCTTCCAATATACAAAGAAAGATCAGGTTATCTCT  48
      ||||| |||||||| |||  |||||  ||||||||||||||||  | |||
seq2  CTCCTCCCTCCACCTTCTCTCAATA-CCAAAGAAAGATCAGGTATTTTCT  49

seq1  GAAAAAAGGAGCATACACCTTTTTGTCTTTATTGCCCTCCATTAAAAACA  98
      | |||||| |||||||| ||||||||||||||||||||||||| ||||||
seq2  G-AAAAAGAAGCATACA-CTTTTTGTCTTTATTGCCCTCCATT-AAAACA  96

seq1  CTAGATCCCTGGGTAC-AACAAATTAATATCTATTTTATTTTATTTTATT  147
      |||||||||||||||| |||||||||||||||||||||||||||||   |
seq2  CTAGATCCCTGGGTACAAACAAATTAATATCTATTTTATTTTATTT--AT  144

seq1  TTATTTACATTTCAAGTGGTGAATTAATATCTATTAATCCAGATTTGATC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATTTCAAGTGGTGAATTAATATCTATTAATCCAGATTTGATC  194

seq1  TATGCATTTCTTAAGCCAAATAGGCAGATAATGAAGGAATAAAAATGGTA  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TATGCATTTCTTAAGCCAAATAGGCAGATAATGAAGGAAT-AAAATGGTA  243

seq1  ATCTTTATTCAGTAAATAACACTTGGAATCATTCCATATCAGTTAGAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTCAGTAAATAACACTTGGAATCATTCCATATCAGTTAGAATG  293

seq1  AGACCATAATTCACAATTATTTTTAGTTGAAAGTGTTATTCCTGAGAACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATAATTCACAATTATTTTTAGTTGAAAGTGTTATTCCTGAGAACA  343

seq1  GTTGACTGGGAAGTTATTGATTATCAACACAATTTATTGAAATAATATCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTGGGAAGTTATTGATTATCAACACAATTTATTGAAATAATATCA  393

seq1  CTTCAAGAAAATGCACAGGGATGCTTCCCTTTAAGCATCACCTTTCAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAAAATGCACAGGGATGCTTCCCTTTAAGCATCACCTTTCAGTA  443

seq1  GAACTTTGCGTAGGAAAGTTTTCATTGAGGACTTCCACTCCAGTGCATTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGCGTAGGAAAGTTTTCATTGAGGACTTCCACTCCAGTGCATTT  493

seq1  CTGAAGTCTGCTTCAGTCCTTAGAATCAGTACATGTTACCTTACCTCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCTGCTTCAGTCCTTAGAATCAGTACATGTTACCTTACCTCTTG  543

seq1  TTCCTCTTTCACTGACTGGGGATCTACTACTCATTCACTCTCTACCAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTCACTGACTGGGGATCTACTACTCATTCACTCTCTACCAACT  593

seq1  CTATTCGCCCAAGGTGTCTTGATCACCGCTTGTCCCATAACAGACTCATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCGCCCAAGGTGTCTTGATCACCGCTTGTCCCATAACAGACTCATC  643

seq1  CTTCTAAGGTCTTTTGTGATCTACATCCTGCACATTTTCAATCTGTCACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGGTCTTTTGTGATCTACATCCTGCACATTTTCAATCTGTCACT  693

seq1  GTTCCAGGTCCATCTAGAATGTTGCTCACAGCCTTCTTTCCTGACAGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTCCATCTAGAATGTTGCTCACAGCCTTCTTTCCTGACAGGTT  743

seq1  CTTCCAATCTCTACTTCTCCACTTGGGAAGACCTCATGGCACTCCTTTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAATCTCTACTTCTCCACTTGGGAAGACCTCATGGCACTCCTTTTC  793

seq1  CTCAGCTTCTTTGTTCCTAATGATACTTTCTATAAATTTTCACTTACTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTCTTTGTTCCTAATGATACTTTCTATAAATTTTCACTTACTAC  843

seq1  AAACAAACAAACAAACAAACAAACAAACAAACTGGGTTTCTCTTCCCAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAACAAACAAACAAACTGGGTTTCTCTTCCCAGT  893

seq1  GTTGTTTCAGCAATATGTGCTTGATCAAAATTCTTCTGCTAGATTCTTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCAGCAATATGTGCTTGATCAAAATTCTTCTGCTAGATTCTTTG  943

seq1  TATCCTGATATTTTCATGTATGTTATATTTTATCTTAATAAATCAGTTAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGATATTTTCATGTATGTTATATTTTATCTTAATAAATCAGTTAG  993

seq1  TTTTTGAAAGACATATGCCCTTTTTTGGGGTACAGAGTGATTAGATAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAAGACATATGCCCTTTTTTGGGGTACAGAGTGATTAGATAGAT  1043

seq1  GAATTCCTCTGTCCTGCCATTTGCTTACTAAAGCCTAGCTATAAAGATAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGTCCTGCCATTTGCTTACTAAAGCCTAGCTATAAAGATAC  1093

seq1  TCAGCAATTACTGAATTC  1115
      ||||||||||||||||||
seq2  TCAGCAATTACTGAATTC  1111

seq1: chr15_56024779_56025937
seq2: B6Ng01-162E17.g_68_1224

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTTGAGGCCACCTTCTTGAGTTATTTATATATATTGGATATTAGTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGGCCACCTTCTTGAGTTATTTATATATATTGGATATTAGTCTC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTACAGAAGCTTTGCAACTTTT  200

seq1  TGAGGTCCCATTTGTCGATTCTCCAACTTACAGCACAAGCCATTGATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCGATTCTCCAACTTACAGCACAAGCCATTGATGTT  250

seq1  CTATTCAGGAATTTCCCCCTGTGGCCTTATCTTTTCCCCACTTTCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTCCCCCTGTGGCCTTATCTTTTCCCCACTTTCCCACT  300

seq1  TTTGCAGTGTATATTTTGCTATGCTATTTAGATCTTGGTTCCTATGCGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTGTATATTTTGCTATGCTATTTAGATCTTGGTTCCTATGCGGT  350

seq1  TTGGTGGCTGGTGAGCACTAATGTTTTTCTTATGACTGGTTTTGGTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCTGGTGAGCACTAATGTTTTTCTTATGACTGGTTTTGGTTCTG  400

seq1  TTAGTTACTGAGGGAAAACTGGGCAGGAATTTTGGAAGAAAACATGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACTGAGGGAAAACTGGGCAGGAATTTTGGAAGAAAACATGAAGA  450

seq1  AATATAGGTAAATGGTCCCCTGGGGTTGTGGTCAAACCATTCATATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGGTAAATGGTCCCCTGGGGTTGTGGTCAAACCATTCATATTTAA  500

seq1  CCCATGTCCTGATAATTTATCATTAAGACAGTAGATATCATCTCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCCTGATAATTTATCATTAAGACAGTAGATATCATCTCTTTGCT  550

seq1  TTCCTCTCTCTGTGTGTTGTAGAAACAATTTTTTTTTGCCTTGTAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTCTCTGTGTGTTGTAGAAACAATTTTTTTTTGCCTTGTAAGAAT  600

seq1  AAATGCCCTTGCTGCCATATTCTTCTGCCTCACATATAAGCATATATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCTTGCTGCCATATTCTTCTGCCTCACATATAAGCATATATGTT  650

seq1  TATCAGTAAACTGAATACATATGCACAGGGTCCATAACATACATAATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAAACTGAATACATATGCACAGGGTCCATAACATACATAATAAT  700

seq1  TATTAAATATGCACATAAGTCAAATAGTAAAAATCCCATAAAAGATAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATATGCACATAAGTCAAATAGTAAAAATCCCATAAAAGATAAGA  750

seq1  TGAGCACTCACTCGTCTAAGTATTTTAATATTTATCAATCTATTTCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTCACTCGTCTAAGTATTTTAATATTTATCAATCTATTTCTAAT  800

seq1  TCAATTAGAATAATTTTTAAAAATCACTAATTAGTGCATATGACTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGAATAATTTTTAAAAATCACTAATTAGTGCATATGACTATTCT  850

seq1  GATTGTTCTCTATCTCTTCTGAGGAGATAATTATATGTCCTACCAA-TTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATTGTTCTCTATCTCTTCTGAGGAGATAATTATATGTCCTACCAATTTT  900

seq1  TTTCTCACTTATATTGGATCAGATTATGGAATGATTTTGACCAACCTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACTTATATTGGATCAGATTATGGAATGATTTTGACCAACCTACT  950

seq1  TTTCACTGTATAAAGGTAAGGAACATGAGAATATTTAAGGGTTCTTGAAT  999
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TTTCACTGTATAAAGGT-AGGAACATGAGAATATTT-AGGGTTCTTGAAT  998

seq1  AGTTCTGGAC-TTTCTTACTCTTTT---ATATTAACCATTGAGCAGAATG  1045
      |  ||||||| ||||||||||||||   |||||||||| |||||||||||
seq2  AAGTCTGGACTTTTCTTACTCTTTTTTAATATTAACCAATGAGCAGAATG  1048

seq1  TTTCAAAGGAGCTCATTTCT-GCCACTTGGATGATGGAATGAAGCAGTAA  1094
      ||||||||||||| |||| |  ||||||||||||| |||||||||| || 
seq2  TTTCAAAGGAGCTTATTTTTCTCCACTTGGATGATTGAATGAAGCATTAC  1098

seq1  CTAAAATGTAAATCAGTTAAGAAACAATTTTTTCTTTGGAAAGCTTTGTG  1144
       ||| |||| |||||  | ||||||||||||   ||||| | || |||||
seq2  TTAATATGTTAATCA--TTAGAAACAATTTT---TTTGGCAGGC-TTGTG  1142

seq1  ATTTCAGTGTTATTT  1159
      ||| ||| |||||||
seq2  ATTCCAGGGTTATTT  1157