BAC Information

Click to search

BAC

Clone NameB6Ng01-162G04
Chromosome15 (Build37)
Map Location 19,941,494 - 20,119,419
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh10, EG666857, EG666875, LOC621884, LOC100040265
Downstream geneAcot10, LOC100040302, Cdh12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162G04.bB6Ng01-162G04.g
ACCDH955236DH955237
length1,0811,033
definitionDH955236|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G04, 5' end.DH955237|Mus musculus domesticus DNA, BAC clone: B6Ng01-162G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,118,327 - 20,119,419)(19,941,494 - 19,942,535)
sequence
gaattcacaacagaggaatctctcaaatggctgagaaacacctaaagaaa
tcttcaaagtccttagtgatcagagaaatgcaaatcaaaacaatcctgag
attccaccttacaccaatcatagtggctaagatctgaacctcaggtgaca
acacatgttgacaaggatgtggagaaattggaacattcctccatttcagg
tgggattgcaaactggtacaatcagtatcctgtactctggatatcagtct
tgaggttcctcagacaattggaaatatatcaacctcaagatccagcaata
catcagttatgttcctatttcattccatttctgtttacttatgaataact
tatgtttcctgttctacataaaattcagtaatacttttagtatctaactg
aataatgtacaacatgaccatagatagagatgcagattggctaagctgtg
gagctctttgcagagctttcaaaattatgtagcctcaacccccccccccc
aaatttcaggtgtcatatttgttgggctcagattttgaaaggccaactta
tatttttcatttgcagaaagaggggcagggtatttacatctctttctgca
tttttaaaaccagtttgaaagactgtacatttgaggagggaccctgaact
tttctatctataccccagatattggcttaatgtttctctaaccactatac
acacccctcagtaaatttccctgtaatatttacattgctttctgattaga
gagattgactaggtttcactgcttgcttccctgtttcttataaatttgtt
tttttctccagtcattgtatgctgcgtagttgtcctacaaagaaactgat
gtaaatctgagataaatcagtgttcaaaagacacatatccctttttgtgt
ttctagatattgtaagtgttgccacaagaaaagcacacacattcgtagct
cagaaagtgaaatctgtgggttcaaacataaagagtttattttctcactg
cgctatggtggtagttgtgtcatctggtggaagatgtcaaaattgtcact
acccatttagatttcaggtttgaccaacaga
gaattccttagctctatggaaatactggaactgatctggagcctccttcc
ttatgacttgcactcatagcatatgaaaatgtaatacaagcttccaagag
agaaaataagtctataggaatacctagttttaaagattacaaatcaagcc
aattaacaacattgcaagatagagcaaaaagcacaatagtatttgtgcct
tggagataaaaacaccaataaattagacattaaataggaaggaatttatg
tatgagattataaatcatcccaaccaaccatgcttgctgagaccttatat
cataacatctttcttaatgtatagtttgagtaagatgaaaataaacctag
aatttaatatttcaggttagatttagaatatttttcttattcatattctt
caaatatgtagaagtctttccactggctaaactcttatattcatcgctag
aatttttctataagaaaatgactaaatgacttaaccacagacatcattct
tctctctataaaacagttcagtttagtttcatgtgatagtagaaataagt
ggatattagcccagaaacttaggatacccaagatataagatacaatttgc
taaacgcatgaaactcaagaagaacaagaccaaagtgtggacactttgcc
ccttcttacaattgggaacaaaatacccatggaaggagttatagagacaa
agtttggagctgagacaaaaggaaagaccatctagagactgccatatcca
gggatctattccataatcagcttccaaatgctgacaccattgcatacact
aacaagattttgctgaaatgacccagatacagctttctcttgtgagacta
tgcgggggcctagcaaacacagaagtggatgctcacagacactattggat
ggatcacagggcccctaatggaggggctagagaagtacccaaggagctaa
agggatttgcaccctatagatggacacatatgaactacagtaccccggag
ctcttgactctagctgcatatgtatcaaagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20118327_20119419
seq2: B6Ng01-162G04.b_46_1126 (reverse)

seq1  TCTGTTGGGTCAAACCTGGAAATTCTAAAATGTGTAGTGACATTTTTGAC  50
      |||||| |||||||||||  || ||| ||||| ||||||||| |||||||
seq2  TCTGTT-GGTCAAACCTG--AAATCT-AAATGGGTAGTGACAATTTTGAC  46

seq1  ATCTTTCCACCAGATGACAACAACTACCACCATAGCCGCAGTGAGGAAAA  100
      ||| |||||||||||||| |||||||||||||||| |||||||||  |||
seq2  ATC-TTCCACCAGATGAC-ACAACTACCACCATAG-CGCAGTGAG--AAA  91

seq1  ATAAACTCTTTATGTTTGGAACCCACAGATTTCACTTTCTGAGCTACGAA  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAAACTCTTTATGTTT-GAACCCACAGATTTCACTTTCTGAGCTACGAA  140

seq1  TGTGGTGTGCTTTTCTTGTGGCAACACTTACAATATTCTAGAAACACAAA  200
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGT-GTGTGCTTTTCTTGTGGCAACACTTACAATA-TCTAGAAACACAAA  188

seq1  AAGGGATATGTGTCTTTTGAACACTGATTTATCTCAGATTTACATCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATGTGTCTTTTGAACACTGATTTATCTCAGATTTACATCAGTT  238

seq1  TCTTTGTAGGACAACTACGCAGCATACAATGACTGGAGAAAAAAACAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAGGACAACTACGCAGCATACAATGACTGGAGAAAAAAACAAAT  288

seq1  TTATAAGAAACAGGGAAGCAAGCAGTGAAACCTAGTCAATCTCTCTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAAACAGGGAAGCAAGCAGTGAAACCTAGTCAATCTCTCTAATC  338

seq1  AGAAAGCAATGTAAATATTACAGGGAAATTTACTGAGGGGTGTGTATAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAATGTAAATATTACAGGGAAATTTACTGAGGGGTGTGTATAGT  388

seq1  GGTTAGAGAAACATTAAGCCAATATCTGGGGTATAGATAGAAAAGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGAAACATTAAGCCAATATCTGGGGTATAGATAGAAAAGTTCAG  438

seq1  GGTCCCTCCTCAAATGTACAGTCTTTCAAACTGGTTTTAAAAATGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTCCTCAAATGTACAGTCTTTCAAACTGGTTTTAAAAATGCAGAA  488

seq1  AGAGATGTAAATACCCTGCCCCTCTTTCTGCAAATGAAAAATATAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTAAATACCCTGCCCCTCTTTCTGCAAATGAAAAATATAAGTTG  538

seq1  GCCTTTCAAAATCTGAGCCCAACAAATATGACACCTGAAATTTGGGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCAAAATCTGAGCCCAACAAATATGACACCTGAAATTTGGGGGGG  588

seq1  GGGGGTTGAGGCTACATAATTTTGAAAGCTCTGCAAAGAGCTCCACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGAGGCTACATAATTTTGAAAGCTCTGCAAAGAGCTCCACAGCT  638

seq1  TAGCCAATCTGCATCTCTATCTATGGTCATGTTGTACATTATTCAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATCTGCATCTCTATCTATGGTCATGTTGTACATTATTCAGTTAG  688

seq1  ATACTAAAAGTATTACTGAATTTTATGTAGAACAGGAAACATAAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAGTATTACTGAATTTTATGTAGAACAGGAAACATAAGTTATT  738

seq1  CATAAGTAAACAGAAATGGAATGAAATAGGAACATAACTGATGTATTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAAACAGAAATGGAATGAAATAGGAACATAACTGATGTATTGCT  788

seq1  GGATCTTGAGGTTGATATATTTCCAATTGTCTGAGGAACCTCAAGACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTGAGGTTGATATATTTCCAATTGTCTGAGGAACCTCAAGACTGA  838

seq1  TATCCAGAGTACAGGATACTGATTGTACCAGTTTGCAATCCCACCTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGAGTACAGGATACTGATTGTACCAGTTTGCAATCCCACCTGAAA  888

seq1  TGGAGGAATGTTCCAATTTCTCCACATCCTTGTCAACATGTGTTGTCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAATGTTCCAATTTCTCCACATCCTTGTCAACATGTGTTGTCACC  938

seq1  TGAGGTTCAGATCTTAGCCACTATGATTGGTGTAAGGTGGAATCTCAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCAGATCTTAGCCACTATGATTGGTGTAAGGTGGAATCTCAGGA  988

seq1  TTGTTTTGATTTGCATTTCTCTGATCACTAAGGACTTTGAAGATTTCTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGATTTGCATTTCTCTGATCACTAAGGACTTTGAAGATTTCTTT  1038

seq1  AGGTGTTTCTCAGCCATTTGAGAGATTCCTCTGTTGTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTCTCAGCCATTTGAGAGATTCCTCTGTTGTGAATTC  1081

seq1: chr15_19941494_19942535
seq2: B6Ng01-162G04.g_67_1099

seq1  GAATTCCTTAGCTCTATGGAAATACTGGAACTGATCTGGAGCCTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTCTATGGAAATACTGGAACTGATCTGGAGCCTCCTTCC  50

seq1  TTATGACTTGCACTCATAGCATATGAAAATGTAATACAAGCTTCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTTGCACTCATAGCATATGAAAATGTAATACAAGCTTCCAAGAG  100

seq1  AGAAAATAAGTCTATAGGAATACCTAGTTTTAAAGATTACAAATCAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGTCTATAGGAATACCTAGTTTTAAAGATTACAAATCAAGCC  150

seq1  AATTAACAACATTGCAAGATAGAGCAAAAAGCACAATAGTATTTGTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAACATTGCAAGATAGAGCAAAAAGCACAATAGTATTTGTGCCT  200

seq1  TGGAGATAAAAACACCAATAAATTAGACATTAAATAGGAAGGAATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAAAACACCAATAAATTAGACATTAAATAGGAAGGAATTTATG  250

seq1  TATGAGATTATAAATCATCCCAACCAACCATGCTTGCTGAGACCTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGATTATAAATCATCCCAACCAACCATGCTTGCTGAGACCTTATAT  300

seq1  CATAACATCTTTCTTAATGTATAGTTTGAGTAAGATGAAAATAAACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATCTTTCTTAATGTATAGTTTGAGTAAGATGAAAATAAACCTAG  350

seq1  AATTTAATATTTCAGGTTAGATTTAGAATATTTTTCTTATTCATATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATATTTCAGGTTAGATTTAGAATATTTTTCTTATTCATATTCTT  400

seq1  CAAATATGTAGAAGTCTTTCCACTGGCTAAACTCTTATATTCATCGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTAGAAGTCTTTCCACTGGCTAAACTCTTATATTCATCGCTAG  450

seq1  AATTTTTCTATAAGAAAATGACTAAATGACTTAACCACAGACATCATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTATAAGAAAATGACTAAATGACTTAACCACAGACATCATTCT  500

seq1  TCTCTCTATAAAACAGTTCAGTTTAGTTTCATGTGATAGTAGAAATAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTATAAAACAGTTCAGTTTAGTTTCATGTGATAGTAGAAATAAGT  550

seq1  GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATACAATTTGC  600

seq1  TAAACGCATGAAACTCAAGAAGAACAAGACCAAAGTGTGGACACTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCATGAAACTCAAGAAGAACAAGACCAAAGTGTGGACACTTTGCC  650

seq1  CCTTCTTACAATTGGGAACAAAATACCCATGGAAGGAGTTATAGAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTACAATTGGGAACAAAATACCCATGGAAGGAGTTATAGAGACAA  700

seq1  AGTTTGGAGCTGAGACAAAAGGAAAGACCATCTAGAGACTGCCATATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGCTGAGACAAAAGGAAAGACCATCTAGAGACTGCCATATCCA  750

seq1  GGGATCTATTCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTATTCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACT  800

seq1  AACAAGATTTTGCTGAAATGACCCAGATACAGCTTTCTCTTGTGAGACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTTTGCTGAAATGACCCAGATACAGCTTTCTCTTGTGAGACTA  850

seq1  TGCGGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGACAACTATTGGA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCGGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGAC-ACTATTGGA  899

seq1  TGGATCACAGGGCCCCTAATGGAGGGGCTAGAGAAAGTACCCAAGGAGCT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGATCACAGGGCCCCTAATGGAGGGGCTAGAG-AAGTACCCAAGGAGCT  948

seq1  AAAGGGATTTGCAACCCTATAGATGGAACAACATTATGAACTAACCAGTA  1000
      |||||||||||| ||||||||||||||   ||| |||||||||  |||||
seq2  AAAGGGATTTGC-ACCCTATAGATGGA--CACA-TATGAACTA--CAGTA  992

seq1  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG  1042
      |||||||||||||||||||||||||||||||||| |||||||
seq2  CCCCGGAGCTCTTGACTCTAGCTGCATATGTATC-AAAGATG  1033