BAC Information

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BAC

Clone NameB6Ng01-162H17
Chromosome15 (Build37)
Map Location 66,456,257 - 66,637,135
singlet/doubletdoublet
Overlap genePhf20l1, Tg, Sla
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881
Downstream geneWisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H17.bB6Ng01-162H17.g
ACCDH955310DH955311
length1,1951,088
definitionDH955310|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H17, 5' end.DH955311|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,456,257 - 66,457,440)(66,636,046 - 66,637,135)
sequence
gaattctacaaagccaaaataaaggagtgattataaacacacaattgtaa
tgtcctttaaattccctttgtaggataaaagaaaaagatggtttttagaa
aaaccagcagcagaatttggcaacaatgaataaaggaaaccctacatgtg
cttaaaagcataagaaaaatggtgacagaaggaagcatgagatgcagaag
acaacataaacacactgtaaatgtgtaatcagtctaaacactgatattag
aaaacagcctgtagagataagaaagcaaagtaatagaaactacaatatat
agtactagcttgtatattgggaggtaattacttgcagttcattactttga
cttccttgtatgattgcttgtaggtcctaagaagtttagtttgcattttc
agacttctaatccaggaatggtggctcacacctgtagtcccagaacttgg
caggttgaggcaggagaatttacacaagtttgaagtcagtctgggctaat
aataagttctaaaacaatgagggctatggtgtaaggccctgtctgtgaaa
aaaatgaaataaaaacatttgttatataagaccaaagaatagtagaataa
agtataatttcctaagtaggagggggggggagtataaatgtaaatgaacc
atctacatccaactgaactgaaaattagaaaacaataaagcataagtaag
gtgttagaaataaatacagcattacttatactttatactttatagaatct
aagtgctagcaaggtggagacaggtagatctttggggctcactagacaaa
tagcttagcctccttaacaagtccaggccagtgagcaaccccatgacaaa
aagtaagaatgaaaatctggacactgcctgaagaacaacgtgcagtctgt
cttccacatgcatttgaacatacatgttgctacctgcactcaagcatgca
catgcacagatacaggaaatgttgaattagcatgaatgaatcagaaataa
taaagtatgaagattataaattagattaataagttaaactcttgctagaa
tcttattttaacccaaaaagttagaatgaaaggagaacggttgctagaat
ataagtccaaggtaaatagtctctccaagccttaaaagaaaatttagaag
tttttctctgtccaattcctttttaaacattgagaggagaggagt
gaattcctttgctgttgttttctcagactgagaagaagaataggaggcta
gaaagagtgtgggctttggagccagtagacctgctttggcctctgcatta
cctctgcctagtcttgaagcctcagagcatgtggctagcttagacgatgt
gagcagtcaggcatagttattacagtacttatccctgtgcagaacagagc
aaaactaatctgcttggtggctgtttcatgtgtcattgttgtggttagag
gtgacatattgagtggacactgaggctcctgactagtggcctctggctcc
caaaccttagaagatggccacaggagtgaatttatagctgtcatgttgta
gaagagatagtgtactccacagggaacgtcgggttcttagttttacattt
atgcctgctgtatccaaggctcctccttgtgtgacttccagggtgtaccc
ccaccttgctcctggttaaagttcttgatgttctttctcttgatgttttg
aaaaggatacagatgacctctctatccacagacagacgtgggtggtaagt
gtgccatgtaggaaacacacatagttctattgtgctataccatcagagta
gaaggcttgggagctgtcagatcccttgcactgatggagaaccacagtag
aaggggctgaagctaagcaggcaaaagacctgcagagaaggactgctaga
tacatagatactttccctatggcagctacaccaaagacctgggatatgtt
tccctctaaatcactcaaacagtgggtagacatgcactgtccaatgccat
cgagaggacagcatagacacagcagagggcatgctgtctgaagtcaagaa
agatagagtttctacacgggaacccaaggaagttgggtcagctcctctta
ggagaaaaaaaggaagtgtcttctctcagagatgctgccgagaaggtagc
ctggcatatgccacctaccttctcttccttttcatagaatataaggaaca
gattgtactcgttccagtgggattgtaaaatgatgatggctctttctcct
tataataaatcttccaaaaagccacgtgagtccttgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_66456257_66457440
seq2: B6Ng01-162H17.b_45_1239

seq1  GAATTCTACAAAGCCAAAATAAAGGAGTGATTATAAACACACAATTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAAAGCCAAAATAAAGGAGTGATTATAAACACACAATTGTAA  50

seq1  TGTCCTTTAAATTCCCTTTGTAGGATAAAAGAAAAAGATGGTTTTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTAAATTCCCTTTGTAGGATAAAAGAAAAAGATGGTTTTTAGAA  100

seq1  AAACCAGCAGCAGAATTTGGCAACAATGAATAAAGGAAACCCTACATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCAGCAGAATTTGGCAACAATGAATAAAGGAAACCCTACATGTG  150

seq1  CTTAAAAGCATAAGAAAAATGGTGACAGAAGGAAGCATGAGATGCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGCATAAGAAAAATGGTGACAGAAGGAAGCATGAGATGCAGAAG  200

seq1  ACAACATAAACACACTGTAAATGTGTAATCAGTCTAAACACTGATATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATAAACACACTGTAAATGTGTAATCAGTCTAAACACTGATATTAG  250

seq1  AAAACAGCCTGTAGAGATAAGAAAGCAAAGTAATAGAAACTACAATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCTGTAGAGATAAGAAAGCAAAGTAATAGAAACTACAATATAT  300

seq1  AGTACTAGCTTGTATATTGGGAGGTAATTACTTGCAGTTCATTACTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAGCTTGTATATTGGGAGGTAATTACTTGCAGTTCATTACTTTGA  350

seq1  CTTCCTTGTATGATTGCTTGTAGGTCCTAAGAAGTTTAGTTTGCATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGTATGATTGCTTGTAGGTCCTAAGAAGTTTAGTTTGCATTTTC  400

seq1  AGACTTCTAATCCAGGAATGGTGGCTCACACCTGTAGTCCCAGAACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCTAATCCAGGAATGGTGGCTCACACCTGTAGTCCCAGAACTTGG  450

seq1  CAGGTTGAGGCAGGAGAATTTACACAAGTTTGAAGTCAGTCTGGGCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGAGGCAGGAGAATTTACACAAGTTTGAAGTCAGTCTGGGCTAAT  500

seq1  AATAAGTTCTAAAACAATGAGGGCTATGGTGTAAGGCCCTGTCTGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTCTAAAACAATGAGGGCTATGGTGTAAGGCCCTGTCTGTGAAA  550

seq1  AAAATGAAATAAAAACATTTGTTATATAAGACCAAAGAATAGTAGAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATAAAAACATTTGTTATATAAGACCAAAGAATAGTAGAATAA  600

seq1  AGTATAATTTCCTAAGTAGGA-GTGGAAAGAATATAAATGTAAATGAACC  649
      ||||||||||||||||||||| | ||   || ||||||||||||||||||
seq2  AGTATAATTTCCTAAGTAGGAGGGGGGGGGAGTATAAATGTAAATGAACC  650

seq1  ATCTACATCCAACTGAACTGAAAATTAGAAAACAATAAAGCATAAGTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATCCAACTGAACTGAAAATTAGAAAACAATAAAGCATAAGTAAG  700

seq1  GTGTTAGAAATAAATACAGCATTACTTATACTTTATACTTTATAGAATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAAATAAATACAGCATTACTTATACTTTATACTTTATAGAATCT  750

seq1  AAGTGCTAGCAAGGTGGAGACAGGTAGATCTTTGGGGCTCACTAGACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTAGCAAGGTGGAGACAGGTAGATCTTTGGGGCTCACTAGACAAA  800

seq1  TAGCTTAGCCTCCTTAACAAGTTCCAGGCCAGTGAGCAACCCCATGACAA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGCTTAGCCTCCTTAACAAG-TCCAGGCCAGTGAGCAACCCCATGACAA  849

seq1  AAAGTAAGAATGAAAATCTGGACACTGCCTGAAGAACAACGTGCAGTCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAATGAAAATCTGGACACTGCCTGAAGAACAACGTGCAGTCTG  899

seq1  TCTTCCACATGCATTTGAACATACATG-TGCTACCTGCACTCAAGCATGC  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTCCACATGCATTTGAACATACATGTTGCTACCTGCACTCAAGCATGC  949

seq1  ACATGCACAGATACAAGAAATGTTGAATTAGCATGAATGAATCAGAAATA  998
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGATACAGGAAATGTTGAATTAGCATGAATGAATCAGAAATA  999

seq1  ATAAAG-ATGAAAGATTAATAAATAAGATTAATAAGTTAAACTC-TGCTA  1046
      |||||| ||| |||||| |||||| ||||||||||||||||||| |||||
seq2  ATAAAGTATG-AAGATT-ATAAATTAGATTAATAAGTTAAACTCTTGCTA  1047

seq1  GAATCTTATTTTAACCCAAAAAGTTAG-ATGGAAAGAG-ACGGTTGCTAG  1094
      ||||||||||||||||||||||||||| ||| || ||| |||||||||||
seq2  GAATCTTATTTTAACCCAAAAAGTTAGAATGAAAGGAGAACGGTTGCTAG  1097

seq1  AAATTAAGTTCAAAGTAAATAG--TCTCCAAAGCTTAAAAGAAATATAAG  1142
      ||  ||||| ||| ||||||||  |||||||  |||||||||||  | ||
seq2  AATATAAGTCCAAGGTAAATAGTCTCTCCAAGCCTTAAAAGAAAATTTAG  1147

seq1  AAGTTTT--TCTGTTCATTTC--TTTTAAACATTGA-AGGA-AGGAGT  1184
      |||||||  ||||| || |||  ||||||||||||| |||| ||||||
seq2  AAGTTTTTCTCTGTCCAATTCCTTTTTAAACATTGAGAGGAGAGGAGT  1195

seq1: chr15_66636046_66637135
seq2: B6Ng01-162H17.g_67_1154 (reverse)

seq1  ATCAA-GACTC-CGTGGCTTTTTGGAAGATTATTAATAAGAGAAAAGAGC  48
      ||||| ||||| |||||||||||||||||||  | |||||   |||||||
seq2  ATCAAGGACTCACGTGGCTTTTTGGAAGATTTATTATAAGGAGAAAGAGC  50

seq1  CATCATCATTTTTACAAAATCCCACTGGAACGAGTACAAATTCTG-TCCT  97
      ||||||||||||   | ||||||||||||||||||||||  |||| ||||
seq2  CATCATCATTTT---ACAATCCCACTGGAACGAGTACAA--TCTGTTCCT  95

seq1  TATATTCTTTGGAAAGG-AGAGAAGGTAGGTGGCATATGCCAGGCTACCT  146
      |||||||| || ||||| ||||||||||||||||||||||||||||||||
seq2  TATATTCTATGAAAAGGAAGAGAAGGTAGGTGGCATATGCCAGGCTACCT  145

seq1  TCTCGGCAGCATCTCTGAGAGAAGACACTTCCTTTTTTTTCTCCTAAGAG  196
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCTCGGCAGCATCTCTGAGAGAAGACACTTCC-TTTTTTTCTCCTAAGAG  194

seq1  GAGCTGACCCAACTTCCTTGGGTTCCCGTGTAGAAACTCTATCTTTCTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGACCCAACTTCCTTGGGTTCCCGTGTAGAAACTCTATCTTTCTTG  244

seq1  ACTTCAGACAGCATGCCCTCTGCTGTGTCTATGCTGTCCTCTCGATGGCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGACAGCATGCCCTCTGCTGTGTCTATGCTGTCCTCTCGATGGCA  294

seq1  TTGGACAGTGCATGTCTACCCACTGTTTGAGTGATTTAGAGGGAAACATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAGTGCATGTCTACCCACTGTTTGAGTGATTTAGAGGGAAACATA  344

seq1  TCCCAGGTCTTTGGTGTAGCTGCCATAGGGAAAGTATCTATGTATCTAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCTTTGGTGTAGCTGCCATAGGGAAAGTATCTATGTATCTAGC  394

seq1  AGTCCTTCTCTGCAGGTCTTTTGCCTGCTTAGCTTCAGCCCCTTCTACTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCTCTGCAGGTCTTTTGCCTGCTTAGCTTCAGCCCCTTCTACTG  444

seq1  TGGTTCTCCATCAGTGCAAGGGATCTGACAGCTCCCAAGCCTTCTACTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCCATCAGTGCAAGGGATCTGACAGCTCCCAAGCCTTCTACTCT  494

seq1  GATGGTATAGCACAATAGAACTATGTGTGTTTCCTACATGGCACACTTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTATAGCACAATAGAACTATGTGTGTTTCCTACATGGCACACTTAC  544

seq1  CACCCACGTCTGTCTGTGGATAGAGAGGTCATCTGTATCCTTTTCAAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGTCTGTCTGTGGATAGAGAGGTCATCTGTATCCTTTTCAAAAC  594

seq1  ATCAAGAGAAAGAACATCAAGAACTTTAACCAGGAGCAAGGTGGGGGTAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGAAAGAACATCAAGAACTTTAACCAGGAGCAAGGTGGGGGTAC  644

seq1  ACCCTGGAAGTCACACAAGGAGGAGCCTTGGATACAGCAGGCATAAATGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAAGTCACACAAGGAGGAGCCTTGGATACAGCAGGCATAAATGT  694

seq1  AAAACTAAGAACCCGACGTTCCCTGTGGAGTACACTATCTCTTCTACAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAGAACCCGACGTTCCCTGTGGAGTACACTATCTCTTCTACAAC  744

seq1  ATGACAGCTATAAATTCACTCCTGTGGCCATCTTCTAAGGTTTGGGAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTATAAATTCACTCCTGTGGCCATCTTCTAAGGTTTGGGAGCC  794

seq1  AGAGGCCACTAGTCAGGAGCCTCAGTGTCCACTCAATATGTCACCTCTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACTAGTCAGGAGCCTCAGTGTCCACTCAATATGTCACCTCTAA  844

seq1  CCACAACAATGACACATGAAACAGCCACCAAGCAGATTAGTTTTGCTCTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAATGACACATGAAACAGCCACCAAGCAGATTAGTTTTGCTCTG  894

seq1  TTCTGCACAGGGATAAGTACTGTAATAACTATGCCTGACTGCTCACATCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCACAGGGATAAGTACTGTAATAACTATGCCTGACTGCTCACATCG  944

seq1  TCTAAGCTAGCCACATGCTCTGAGGCTTCAAGACTAGGCAGAGGTAATGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCTAGCCACATGCTCTGAGGCTTCAAGACTAGGCAGAGGTAATGC  994

seq1  AGAGGCCAAAGCAGGTCTACTGGCTCCAAAGCCCACACTCTTTCTAGCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAAAGCAGGTCTACTGGCTCCAAAGCCCACACTCTTTCTAGCCT  1044

seq1  CCTATTCTTCTTCTCAGTCTGAGAAAACAACAGCAAAGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTTCTTCTCAGTCTGAGAAAACAACAGCAAAGGAATTC  1088