BAC Information

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BAC

Clone NameB6Ng01-163A14
Chromosome15 (Build37)
Map Location 46,637,353 - 46,775,704
singlet/doubletdoublet
Overlap geneLOC100039438
Upstream geneLOC100039389, EG432951
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163A14.bB6Ng01-163A14.g
ACCDH955723DH955724
length1,1701,168
definitionDH955723|Mus musculus domesticus DNA, BAC clone: B6Ng01-163A14, 5' end.DH955724|Mus musculus domesticus DNA, BAC clone: B6Ng01-163A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,637,353 - 46,638,522)(46,774,540 - 46,775,704)
sequence
gaattcacaatgtattaaaattttcttgggtacaaagacatttttccata
aaaatataactcactctaattctggataccagacttgaagaaacatgtta
caagtgttaaaaaacatattttaaaatgctagtgagcagagctttgatga
gattctttctaagacattggtaggatgcagctgtgatttgaatggtttga
ataatatggagtaattgggactttcttccactttcatttactgcaaaaga
gacacagtaattgatggatttcctttgtgtgcaaaaaggaagtctcagag
atactttctgaacacatttaatgcagttttaaaattaaagtaggaaaagt
aaatatttaacttcaagacaaataccccaaatatttatcctaaggaactc
agccttgcaaatttagatgtcttattatcttggcagcaggttttagcaaa
cactctacactcattagattcaatgctctttcaatatattaaagtttctc
tggctgccaagaatctatttttgcccctaaaaatataattagcatgataa
gtttactataacttagaatcaagcctttcaaagtatcaaagtatatgctt
tgagtatatgctttaaacattaagaaatattttatatttttcctaggaaa
tagaagacaaatgaatcttgaatataaagaaatcaatctatgtatgtaca
aactgagcccatccattgtatcaagccatatactcatgtttattatacaa
aaactgataatataaatctatataataaacattatataactccatcacta
caactagtagaataatgcatattttattccagtcttaacctatgaaattt
gaaatttcactaatttcaaaagctagtaagtagttgtggattaattagca
ctccagcctatatttcaaacatggaatcatccagaatctacaaagtacat
gacaagtaaaattattttactaggaaatatttgcaataatatttaattat
ataataataatcaagggttgattatttatttctaagttatgatggacgaa
gtgaacaccaaaccagactatgaaaaacataagaacaatggttcttcacc
tttcaaatctgccaccgttcgtacagttcctagggtgctgggattccaga
tcataaaaatgacttttgtt
gaattctctttagccttacacttctagaaacctagaagagaatgatgtat
tgtagcagtgtgcagctgcatgacatcacagatgtgtttttcacaccttt
tctttgttgccatctttaacatgctgcctaaagccctttatttttcagac
ataagcctcccaactattgttttaggcaacatgaaaatgcgttcactatt
ttattagatattttaatttataattgttcttcaaattatttgaagggatt
taattaataaaattggtactcattaatgaaatgcctgaggaaactgtctt
ccaaagtgttgttcaataaaacataaacaaaacattaaacaatagaaaaa
tacctcatagtgttcttttctttgtacaaataatcacttaaactgctcag
agccttcaaaaatttattaggtcttcaagtaaaacaagaaatcatcgact
ccctcatggtggtctccaggaatttctaatgtttaccttccttttatctt
ggccttactcttaagtgacacatatgtctcagttaatgcatcttttgttg
aaacattttgccaatacttctgtttctcagcattttatatagtctacctg
aagtgtaatactttggaagaacaatatttcttgcaatattgaagttacat
cctgatccaaaacatagtgttcctgatgtcactataatctgtgaagtata
gggatcatcttttatagccatgtacacagtgacaccttagacatttctgt
agccactactttcgagctgaggttcattcctctgtaaattatcctacttg
gttccagctttcatttgtcctaccttttgtatagatttgtgtgagaaatt
attgtctaaagccttcttactagttgcatggtggctgtactcagacaagt
ttttttgtattagcaactgacacaaatccccagatgttcccaggtaactt
gtcaaatgtttttaaaatcctaaaggcaattaaaaaattaattttgtttt
tagtaatggatggagtagcaagtatttttcttcattaaggtaaccctctg
ttggttaacaatgaagaattttccttaccttggtttggtaactccgttgc
ctcctatgcttctggcttaccatgatgtacacagtcctcctaaacttcct
accaaactgtgatgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_46637353_46638522
seq2: B6Ng01-163A14.b_46_1215

seq1  GAATTCACAATGTATTAAAATTTTCTTGGGTACTAAGACATTTTTCCATA  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTCACAATGTATTAAAATTTTCTTGGGTACAAAGACATTTTTCCATA  50

seq1  AAAATATAACTCACTCTAATTCTGGATACCAGACTTGAAGAAACATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAACTCACTCTAATTCTGGATACCAGACTTGAAGAAACATGTTA  100

seq1  CAAGTGTTAAAAAACATATTTTAAAATGCTAGTGAGCAGAGCTTTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTAAAAAACATATTTTAAAATGCTAGTGAGCAGAGCTTTGATGA  150

seq1  GATTCTTTCTAAGACATTGGTAGGATGCAGCTGTGATTTGAATGGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTCTAAGACATTGGTAGGATGCAGCTGTGATTTGAATGGTTTGA  200

seq1  ATAATATGGAGTAATTGGGACTTTCTTCCACTTTCATTTACTGCAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGGAGTAATTGGGACTTTCTTCCACTTTCATTTACTGCAAAAGA  250

seq1  GACACAGTAATTGATGGATTTCCTTTGTGTGCAAAAAGGAAGTCTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTAATTGATGGATTTCCTTTGTGTGCAAAAAGGAAGTCTCAGAG  300

seq1  ATACTTTCTGAACACATTTAATGCAGTTTTAAAATTAAAGTAGGAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTCTGAACACATTTAATGCAGTTTTAAAATTAAAGTAGGAAAAGT  350

seq1  AAATATTTAACTTCAAGACAAATACCCCAAATATTTATCCTAAGGAACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAACTTCAAGACAAATACCCCAAATATTTATCCTAAGGAACTC  400

seq1  AGCCTTGCAAATTTAGATGTCTTATTATCTTGGCAGCAGGTTTTAGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCAAATTTAGATGTCTTATTATCTTGGCAGCAGGTTTTAGCAAA  450

seq1  CACTCTACACTCATTAGATTCAATGCTCTTTCAATATATTAAAGTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTACACTCATTAGATTCAATGCTCTTTCAATATATTAAAGTTTCTC  500

seq1  TGGCTGCCAAGAATCTATTTTTGCCCCTAAAAATATAATTAGCATGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCAAGAATCTATTTTTGCCCCTAAAAATATAATTAGCATGATAA  550

seq1  GTTTACTATAACTTAGAATCAAGCCTTTCAAAGTATCAAAGTATATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTATAACTTAGAATCAAGCCTTTCAAAGTATCAAAGTATATGCTT  600

seq1  TGAGTATATGCTTTAAACATTAAGAAATATTTTATATTTTTCCTAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATGCTTTAAACATTAAGAAATATTTTATATTTTTCCTAGGAAA  650

seq1  TAGAAGACAAATGAATCTTGAATATAAAGAAATCAATCTATGTATGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACAAATGAATCTTGAATATAAAGAAATCAATCTATGTATGTACA  700

seq1  AACTGAGCCCATCCATTGTATCAAGCCATATACTCATGTTTATTATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCCATCCATTGTATCAAGCCATATACTCATGTTTATTATACAA  750

seq1  AAACTGATAATATAAATCTATATAATAAACATTATATAACTCCATCACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATAATATAAATCTATATAATAAACATTATATAACTCCATCACTA  800

seq1  CAACTAGTAGAATAATGCATATTTTATTCCAGTCTTAACCTATGAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTAGAATAATGCATATTTTATTCCAGTCTTAACCTATGAAATTT  850

seq1  GAAATTTCACTAATTTCAAAAGCTAGTAAGTAGTTGTGGATTAATTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCACTAATTTCAAAAGCTAGTAAGTAGTTGTGGATTAATTAGCA  900

seq1  CTCCAGCCTATATTTCAAACATGGAATCATCCAGAATCTACAAAGTACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCTATATTTCAAACATGGAATCATCCAGAATCTACAAAGTACAT  950

seq1  GACAAGTAAAAATTATTTTACTAGGAAATATTTGCAATAATATTTAATTA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGT-AAAATTATTTTACTAGGAAATATTTGCAATAATATTTAATTA  999

seq1  TATAATAATAATCAAGGGTTGATTATTTATTTCTAAGTTATGAT-GACGA  1049
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATAATAATAATCAAGGGTTGATTATTTATTTCTAAGTTATGATGGACGA  1049

seq1  AGTGAACA-CAAACCAGACTATGAAAAACATAAG-ACAATTGTTCTCAAC  1097
      |||||||| ||||||||||||||||||||||||| ||||| |||||  ||
seq2  AGTGAACACCAAACCAGACTATGAAAAACATAAGAACAATGGTTCTTCAC  1099

seq1  TTTTCAAATTCTGCAACCGTTTCGTACAGTTCCTAGTGTTGCTGTGATTC  1147
       ||||||| ||||| |||| |||||||||||||||| | ||||| |||||
seq2  CTTTCAAA-TCTGCCACCG-TTCGTACAGTTCCTAG-GGTGCTGGGATTC  1146

seq1  CAGATCAT-AAAATGACTTTTGTT  1170
      |||||||| |||||||||||||||
seq2  CAGATCATAAAAATGACTTTTGTT  1170

seq1: chr15_46774540_46775704
seq2: B6Ng01-163A14.g_68_1235 (reverse)

seq1  CAGACCATCAC-GTTTGGTAGGAAGTTTATGAGACCTGTGTACATTCCAT  49
      |||| |||||| ||||||||||||||||| |||  ||||||||||  |||
seq2  CAGA-CATCACAGTTTGGTAGGAAGTTTAGGAGGACTGTGTACAT--CAT  47

seq1  GTATAGCCAGAAAGCATAG--AGCAACGAAGTT-CCAAA-CACAGTGAAG  95
      |   |||||| ||||||||   |||||| |||| ||||| ||  || | |
seq2  GGTAAGCCAG-AAGCATAGGAGGCAACGGAGTTACCAAACCAAGGTAAGG  96

seq1  AAAATTCTTCATAGTTAACC-ACAGA-GGTTAACCTAATGAAGAAAAATA  143
      |||||||||||| ||||||| ||||| ||||| | |||||||||||||||
seq2  AAAATTCTTCATTGTTAACCAACAGAGGGTTACCTTAATGAAGAAAAATA  146

seq1  CTTGCTACTTCATCCATTACT-AAAACAAAATTAATTTTTTATTTGCCTT  192
      ||||||||| ||||||||||| |||||||||||||||||||| |||||||
seq2  CTTGCTACTCCATCCATTACTAAAAACAAAATTAATTTTTTAATTGCCTT  196

seq1  TAGGATTTTAAAAACATTTGACAAGTTACCTGGGAACATCTGGGGATTTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTTAAAAACATTTGACAAGTTACCTGGGAACATCTGGGGATTTG  246

seq1  TGTCAGTTGCTAATACAAAAAAACCTTGTCTGAGTACAGCCACCATGCAA  292
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCAGTTGCTAATACAAAAAAA-CTTGTCTGAGTACAGCCACCATGCAA  295

seq1  CTAGTAAGAAGGCCTTAGACAATAATTTCTCACACAAATCTATACAAAAG  342
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGAAGGCTTTAGACAATAATTTCTCACACAAATCTATACAAAAG  345

seq1  GTAGGACAAATGAAAGCTGGAACCAAGTAGGATAATTTACAGAGGAATGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACAAATGAAAGCTGGAACCAAGTAGGATAATTTACAGAGGAATGA  395

seq1  ACCTCAGCTCGAAAGTAGTGGCTACAGAAATGTCTAAGGTGTCACTGTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGCTCGAAAGTAGTGGCTACAGAAATGTCTAAGGTGTCACTGTGT  445

seq1  ACATGGCTATAAAAGATGATCCCTATACTTCACAGATTATAGTGACATCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTATAAAAGATGATCCCTATACTTCACAGATTATAGTGACATCA  495

seq1  GGAACACTATGTTTTGGATCAGGATGTAACTTCAATATTGCAAGAAATAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTATGTTTTGGATCAGGATGTAACTTCAATATTGCAAGAAATAT  545

seq1  TGTTCTTCCAAAGTATTACACTTCAGGTAGACTATATAAAATGCTGAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCAAAGTATTACACTTCAGGTAGACTATATAAAATGCTGAGAA  595

seq1  ACAGAAGTATTGGCAAAATGTTTCAACAAAAGATGCATTAACTGAGACAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTATTGGCAAAATGTTTCAACAAAAGATGCATTAACTGAGACAT  645

seq1  ATGTGTCACTTAAGAGTAAGGCCAAGATAAAAGGAAGGTAAACATTAGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACTTAAGAGTAAGGCCAAGATAAAAGGAAGGTAAACATTAGAA  695

seq1  ATTCCTGGAGACCACCATGAGGGAGTCGATGATTTCTTGTTTTACTTGAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGAGACCACCATGAGGGAGTCGATGATTTCTTGTTTTACTTGAA  745

seq1  GACCTAATAAATTTTTGAAGGCTCTGAGCAGTTTAAGTGATTATTTGTAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAATAAATTTTTGAAGGCTCTGAGCAGTTTAAGTGATTATTTGTAC  795

seq1  AAAGAAAAGAACACTATGAGGTATTTTTCTATTGTTTAATGTTTTGTTTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAACACTATGAGGTATTTTTCTATTGTTTAATGTTTTGTTTA  845

seq1  TGTTTTATTGAACAACACTTTGGAAGACAGTTTCCTCAGGCATTTCATTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTGAACAACACTTTGGAAGACAGTTTCCTCAGGCATTTCATTA  895

seq1  ATGAGTACCAATTTTATTAATTAAATCCCTTCAAATAATTTGAAGAACAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTACCAATTTTATTAATTAAATCCCTTCAAATAATTTGAAGAACAA  945

seq1  TTATAAATTAAAATATCTAATAAAATAGTGAACGCATTTTCATGTTGCCT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATTAAAATATCTAATAAAATAGTGAACGCATTTTCATGTTGCCT  995

seq1  AAAACAATAGTTGGGAGGCTTATGTCTGAAAAATAAAGGGCTTTAGGCAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATAGTTGGGAGGCTTATGTCTGAAAAATAAAGGGCTTTAGGCAG  1045

seq1  CATGTTAAAGATGGCAACAAAGAAAAGGTGTGAAAAACACATCTGTGATG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAAAGATGGCAACAAAGAAAAGGTGTGAAAAACACATCTGTGATG  1095

seq1  TCATGCAGCTGCACACTGCTACAATACATCATTCTCTTCTAGGTTTCTAG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGCTGCACACTGCTACAATACATCATTCTCTTCTAGGTTTCTAG  1145

seq1  AAGTGTAAGGCTAAAGAGAATTC  1165
      |||||||||||||||||||||||
seq2  AAGTGTAAGGCTAAAGAGAATTC  1168