BAC Information

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BAC

Clone NameB6Ng01-163D20
Chromosome15 (Build37)
Map Location 100,033,158 - 100,148,239
singlet/doubletdoublet
Overlap geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a
Upstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
Downstream geneENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163D20.bB6Ng01-163D20.g
ACCDH955877DH955878
length1,106244
definitionDH955877|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D20, 5' end.DH955878|Mus musculus domesticus DNA, BAC clone: B6Ng01-163D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,033,158 - 100,034,268)(100,147,996 - 100,148,239)
sequence
gaattccctccctaacagagaagtagcaccccaaggactaacacaggtgg
tggggagctagctgtctgcagactagggaatgagagaaatgcaagggaat
ggggctagaacagaagtacagtgctgagaagagaagcctaaaagcttggg
ttttggggtaccccccttcttttgtggaggtgatggtgcaatccagggcc
tgtgcatcctagcctggtgcttccctcctcagccccagaggaaaggcatg
gagtagatcagctgtaggtgatagtacctaggcatttggccatttccttt
ctgaaagatatttttctctgtgtctgggcccagaaggtaccccttggctt
ttcccgaacaagaagggatctttctaactatgtttctgacaccaatttct
tgcagaccagagggatcaatctttcttgcatccggacctgtgtggtggtg
gcagaggagcggccccgtgtcagccttcagcagtccttctccaagctctt
caaagacatcggtctgtcccctcgagctgtcagcaccacttttggatcca
gagtcaatgtagcaatatgtttacaggtaacaccatgttgatgtgtggta
tttaataattctattagttcttattatgaccctacgagtcccacagtaat
tgagtcagagttacatggatttatttaatcagcattagcatatttactgg
gcgatgttttgattttgctgtttaaaagttttattttatttaatgtatgt
gagcacactgttgcagacacaccagaagagggcatcagatcccattacag
atggatgtgagccaccatgtggttgctgggaattgaactcacagcctctg
gaagaccagcctgtgctcttaacccctgagccatctctccagcccccttg
ggtgatgttttttacactagactgggccatttcccaactagactccccaa
gttatttactgtttgagtctcaactgggtatttctgctccatctgactgt
cctcaggaggcatttctcttggcaaatgtcctagtccatcttgtctaatg
agacctctgctcctcctgtcttctttcgcttcctcctcgggtccctactg
tgaccc
agctcaaaacagcccctgctcttccccaaggtaggtaggatcacatgttc
tggcatctatgcattttcttcagtgatgactgaagagacttcttcatagc
ttattcaagagcagaaaacatagtaggtactcaatattaagtatcagtta
aagaaaaaataagccagggctatagatcagtcaagagcgcttgcctctca
gggttgggcaggggtggcagggcggaggggggggggcggtgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100033158_100034268
seq2: B6Ng01-163D20.b_45_1150

seq1  GAATTCCCTCCCTAACAGAGAAGTAGCACCCCAAGGACTAACACAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCTAACAGAGAAGTAGCACCCCAAGGACTAACACAGGTGG  50

seq1  TGGGGAGCTAGCTGTCTGCAGACTAGGGAATGAGAGAAATGCAAGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGCTAGCTGTCTGCAGACTAGGGAATGAGAGAAATGCAAGGGAAT  100

seq1  GGGGCTAGAACAGAAGTACAGTGCTGAGAAGAGAAGCCTAAAAGCTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAGAACAGAAGTACAGTGCTGAGAAGAGAAGCCTAAAAGCTTGGG  150

seq1  TTTTGGGGTACCCCCCTTCTTTTGTGGAGGTGATGGTGCAATCCAGGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGTACCCCCCTTCTTTTGTGGAGGTGATGGTGCAATCCAGGGCC  200

seq1  TGTGCATCCTAGCCTGGTGCTTCCCTCCTCAGCCCCAGAGGAAAGGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCCTAGCCTGGTGCTTCCCTCCTCAGCCCCAGAGGAAAGGCATG  250

seq1  GAGTAGATCAGCTGTAGGTGATAGTACCTAGGCATTTGGCCATTTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGATCAGCTGTAGGTGATAGTACCTAGGCATTTGGCCATTTCCTTT  300

seq1  CTGAAAGATATTTTTCTCTGTGTCTGGGCCCAGAAGGTACCCCTTGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGATATTTTTCTCTGTGTCTGGGCCCAGAAGGTACCCCTTGGCTT  350

seq1  TTCCCGAACAAGAAGGGATCTTTCTAACTATGTTTCTGACACCAATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGAACAAGAAGGGATCTTTCTAACTATGTTTCTGACACCAATTTCT  400

seq1  TGCAGACCAGAGGGATCAATCTTTCTTGCATCCGGACCTGTGTGGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACCAGAGGGATCAATCTTTCTTGCATCCGGACCTGTGTGGTGGTG  450

seq1  GCAGAGGAGCGGCCCCGTGTCAGCCTTCAGCAGTCCTTCTCCAAGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAGCGGCCCCGTGTCAGCCTTCAGCAGTCCTTCTCCAAGCTCTT  500

seq1  CAAAGACATCGGTCTGTCCCCTCGAGCTGTCAGCACCACTTTTGGATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATCGGTCTGTCCCCTCGAGCTGTCAGCACCACTTTTGGATCCA  550

seq1  GAGTCAATGTAGCAATATGTTTACAGGTAACACCATGTTGATGTGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATGTAGCAATATGTTTACAGGTAACACCATGTTGATGTGTGGTA  600

seq1  TTTAATAATTCTATTAGTTCTTATTATGACCCTACGAGTCCCACAGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAATTCTATTAGTTCTTATTATGACCCTACGAGTCCCACAGTAAT  650

seq1  TGAGTCAGAGTTACATGGATTTATTTAATCAGCATTAGCATATTTACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGAGTTACATGGATTTATTTAATCAGCATTAGCATATTTACTGG  700

seq1  GCGATGTTTTGATTTTGCTGTTTAAAAGATTTA-TTTATTTAATGTATGT  749
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  GCGATGTTTTGATTTTGCTGTTTAAAAGTTTTATTTTATTTAATGTATGT  750

seq1  GAGCACACTGTTGCAGACACACCAGAAGAGGGCATCAGATCCCATTACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACTGTTGCAGACACACCAGAAGAGGGCATCAGATCCCATTACAG  800

seq1  ATGGATGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACAGCCTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCACAGCCTCTG  850

seq1  GAAGACCAGCCTGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGCCTGTGCTCTTAACCCCTGAGCCATCTCTCCAGCCCCCTTG  900

seq1  GGTGATGTTTTTTACACTAGACT-GGCCATTTCCCAACTAGACTCCCCAA  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTGATGTTTTTTACACTAGACTGGGCCATTTCCCAACTAGACTCCCCAA  950

seq1  GTTATTTACTGTTTGAGTCTCACCTGGGTTATTTCTGCTCCATCTGACTG  998
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GTTATTTACTGTTTGAGTCTCAACTGGG-TATTTCTGCTCCATCTGACTG  999

seq1  TCCTCAGGAGGCATTTCTCTTGGCCACATGTCCTAGTCCATCCTGTCTAA  1048
      ||||||||||||||||||||||| || ||||||||||||||| |||||||
seq2  TCCTCAGGAGGCATTTCTCTTGG-CAAATGTCCTAGTCCATCTTGTCTAA  1048

seq1  TGGAGACCTCTGGCTCTCCTGTCTTCTTTCTCCTTCCTCCCTCGTGGTCC  1098
      | ||||||||||   |||||||||||||||  |||||| ||||| |||||
seq2  T-GAGACCTCTGCTCCTCCTGTCTTCTTTC-GCTTCCT-CCTCG-GGTCC  1094

seq1  CTACCTGTGACCC  1111
      ||| |||||||||
seq2  CTA-CTGTGACCC  1106

seq1: chr15_100147996_100148239
seq2: B6Ng01-163D20.g_73_316 (reverse)

seq1  CAACACCGCCCCCCCCCCTCCGCCCTGCCACCCCTGCCCAACCCTGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCGCCCCCCCCCCTCCGCCCTGCCACCCCTGCCCAACCCTGAGAG  50

seq1  GCAAGCGCTCTTGACTGATCTATAGCCCTGGCTTATTTTTTCTTTAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCGCTCTTGACTGATCTATAGCCCTGGCTTATTTTTTCTTTAACTG  100

seq1  ATACTTAATATTGAGTACCTACTATGTTTTCTGCTCTTGAATAAGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAATATTGAGTACCTACTATGTTTTCTGCTCTTGAATAAGCTATG  150

seq1  AAGAAGTCTCTTCAGTCATCACTGAAGAAAATGCATAGATGCCAGAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTCTCTTCAGTCATCACTGAAGAAAATGCATAGATGCCAGAACAT  200

seq1  GTGATCCTACCTACCTTGGGGAAGAGCAGGGGCTGTTTTGAGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTACCTACCTTGGGGAAGAGCAGGGGCTGTTTTGAGCT  244