BAC Information

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BAC

Clone NameB6Ng01-163E09
Chromosome5 (Build37)15 (Build37)
Map Location 8,616,691 - 8,617,80484,798,076 - 84,798,120
singlet/doubletsingletsinglet
Overlap geneGm440
Upstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40
Downstream geneAbcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163E09.bB6Ng01-163E09.g
ACCDH955903DH955904
length1,093401
definitionDH955903|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E09, 5' end.DH955904|Mus musculus domesticus DNA, BAC clone: B6Ng01-163E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,616,691 - 8,617,804)(84,798,076 - 84,798,120)
sequence
gaattcagtgggttacaacaaaacaaagcaagcagacacatgacatataa
ttacaaaggggatttcttgggcagaagttgttcattgaggagtgtgaggg
agacaagagagtgatgtaggcacataaaatgaccaaactacactatatac
atattaaaaatggtaaaatttttaaaaactcagaatgcctttcatggaaa
ctgataggtagatttgcacaatttatctggcaaaaggctaaaggacagga
ttatctccaaatataaagctataaaactttattatcaaacagtaagacat
attataaataatagctattaagatagtactaaattatttcaagaagaaat
tagtagactgatgaaatgagaaaaagagcccggaaatagaggcagaacag
tcctgttatttaagacaaaagtaatatctgaaggtattagacaggtattt
tcaacaggcagtactaggccaactgattttttttttaaggacaatattta
atccccacacttaacaccacaaatataaataatctgcaaatggattgttg
atataaatgcaaaaagcaaaacaacaaagctttagaagaaaatgagagta
tttgattatttgggaaatcaagcggattattaagctggttagtattaatc
atgaaggaaacctatagattgctttataattaaggaattctctttacact
gtacaggaaaaagtcaatagagaaacaaaaatgcgatgggcagtatgttt
atgttatgcattgtttttaacatgcatattttaaatcaatacaattccag
aggctgaggagatatctcagtcagtaaagtgctttatttgcatgaggacc
ttgcgttcaatctccagaattatattaaaaacaaacaaacaaacaaacaa
acatcccagtcacaatcccagggctgggaaaagcaggcagaggcacatcc
ccaaggctcactgtcagtcagtctacctcatttggtgaccttcaggccat
tgatagtcccttatgcagaaacagtgtagacaatgcctgaggaatgacac
tgaggttgacttcagacatcacatgcacaaacatgtaatacat
ccgtatgatgggcaatttcccagtgtgtgcagaaggctttgaattgagag
ctagtgaaggaacggtcattattagtttttatctgttgaggaatgcccat
ggtggcaaaggtggagagcacatggtgaattaacctttttgagttttcac
ctatttgggctgtagcccatataaaatgtgactatgtatctatggtgaca
aaaacatttctgtctaccaaattgccataagacattggacttaaggcctc
agggattggtgcccatcatttgtaaagctggggtggtaatgagggatgca
caagaggagcatgtctttattatcttttggagttgagcaagaggatgtgg
gaaagtgggcatgaagcccctttgtgtgtgtgtgtgtgtgtgtgtgtgtg
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_8616691_8617804
seq2: B6Ng01-163E09.b_45_1137

seq1  GAATTCAGTGGGTTACAACAAAACAAAGCAAGCAGACACATGACATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGGTTACAACAAAACAAAGCAAGCAGACACATGACATATAA  50

seq1  TTACAAAGGGGATTTCTTGGGCAGAAGTTGTTCATTGAGGAGTGTGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGGGGATTTCTTGGGCAGAAGTTGTTCATTGAGGAGTGTGAGGG  100

seq1  AGACAAGAGAGTGATGTAGGCACATAAAATGACCAAACTACACTATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAGAGTGATGTAGGCACATAAAATGACCAAACTACACTATATAC  150

seq1  ATATTAAAAATGGTAAAATTTTTAAAAACTCAGAATGCCTTTCATGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAATGGTAAAATTTTTAAAAACTCAGAATGCCTTTCATGGAAA  200

seq1  CTGATAGGTAGATTTGCACAATTTATCTGGCAAAAGGCTAAAGGACAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGTAGATTTGCACAATTTATCTGGCAAAAGGCTAAAGGACAGGA  250

seq1  TTATCTCCAAATATAAAGCTATAAAACTTTATTATCAAACAGTAAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCCAAATATAAAGCTATAAAACTTTATTATCAAACAGTAAGACAT  300

seq1  ATTATAAATAATAGCTATTAAGATAGTACTAAATTATTTCAAGAAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAATAATAGCTATTAAGATAGTACTAAATTATTTCAAGAAGAAAT  350

seq1  TAGTAGACTGATGAAATGAGAAAAAGAGCCCGGAAATAGAGGCAGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACTGATGAAATGAGAAAAAGAGCCCGGAAATAGAGGCAGAACAG  400

seq1  TCCTGTTATTTAAGACAAAAGTAATATCTGAAGGTATTAGACAGGTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTATTTAAGACAAAAGTAATATCTGAAGGTATTAGACAGGTATTT  450

seq1  TCAACAGGCAGTACTAGGCCAACTGATTTTTTTTTTAAGGACAATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGGCAGTACTAGGCCAACTGATTTTTTTTTTAAGGACAATATTTA  500

seq1  ATCCCCACACTTAACACCACAAATATAAATAATCTGCAAATGGATTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACACTTAACACCACAAATATAAATAATCTGCAAATGGATTGTTG  550

seq1  ATATAAATGCAAAAAGCAAAACAACAAAGCTTTAGAAGAAAATGAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATGCAAAAAGCAAAACAACAAAGCTTTAGAAGAAAATGAGAGTA  600

seq1  TTTGATTATTTGGGAAATCAAGCGGATTATTAAGCTGGTTAGTATTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTATTTGGGAAATCAAGCGGATTATTAAGCTGGTTAGTATTAATC  650

seq1  ATGAAGGAAACCTATAGATTGCTTTATAATTAAGGAATTCTCTTTACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGAAACCTATAGATTGCTTTATAATTAAGGAATTCTCTTTACACT  700

seq1  GTACAGGAAAAAGTCAATAGAGAAACAAAAATGCGATGGGCAGTATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAAAAAGTCAATAGAGAAACAAAAATGCGATGGGCAGTATGTTT  750

seq1  ATGTTATGCATTGTTTTTAACATGCATATTTTAAATCAATACAATTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGCATTGTTTTTAACATGCATATTTTAAATCAATACAATTCCAG  800

seq1  AGGCTGAGGAGATATCTCAGTCAGTAAAGTGCTTTATTTGCATGAGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGAGATATCTCAGTCAGTAAAGTGCTTTATTTGCATGAGGACC  850

seq1  -TGCGTTCAATCTCCAGAATTATATTAAAAACAAACAAACAAACAAACAA  899
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTTCAATCTCCAGAATTATATTAAAAACAAACAAACAAACAAACAA  900

seq1  ACATCCCAGTCACAATCCCAGGGCTGGGAAAAGCAGGCAGAGGCACATCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCAGTCACAATCCCAGGGCTGGGAAAAGCAGGCAGAGGCACATCC  950

seq1  CCAAGGCTCACTGGTCAGTCAGTCTACCTCATTTGGTGACCTTCAGGCCA  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCTCACT-GTCAGTCAGTCTACCTCATTTGGTGACCTTCAGGCCA  999

seq1  TTGATAGTCCCCTTATGCAGAAACAGTGTAGACAATGCCTGAGGAATGAC  1049
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGT-CCCTTATGCAGAAACAGTGTAGACAATGCCTGAGGAATGAC  1048

seq1  ACTTGAGGTTGACTTCAGACCATCACATGCACAAAACATGTACATACATG  1099
      || |||||||||||||||| |||||||||||| ||||||||| |||||| 
seq2  AC-TGAGGTTGACTTCAGA-CATCACATGCAC-AAACATGTA-ATACAT-  1093

seq1  CACAAACATATACAT  1114
                     
seq2  ---------------  1093

seq1: chr15_84798076_84798120
seq2: B6Ng01-163E09.g_429_476 (reverse)

seq1  ACACACACACACACACACACACACACACAAAG----TTCATAGCCCACT  45
      ||||||||||||||||||||||||||||||||    ||||| |||||||
seq2  ACACACACACACACACACACACACACACAAAGGGGCTTCAT-GCCCACT  48