BAC Information

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BAC

Clone NameB6Ng01-163H18
Chromosome15 (Build37)
Map Location 50,609,081 - 50,740,311
singlet/doubletdoublet
Overlap geneTrps1, LOC100039644
Upstream geneLOC665160
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163H18.bB6Ng01-163H18.g
ACCDH956058DH956059
length714957
definitionDH956058|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H18, 5' end.DH956059|Mus musculus domesticus DNA, BAC clone: B6Ng01-163H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,609,081 - 50,609,792)(50,739,357 - 50,740,311)
sequence
gaattcagtggcatctttggaagttcctagtctcacattgttgtaacagg
atttttcttttcttaaaattccatcatattatttttcattttattgtgta
cacgtatttcctctgtctttttactctacaagtcccttgcttgtgtcttt
gagtttagtgattctatgggatttcctgagtgaacaagttggactcaaat
tcgagtgccctctcttggactgttgtatttctttgcatttctgactattt
ccatggttaacttttgatttatctcattatatttcattattgtcctcaga
agcctgttttctaatgcgagacagaaaagaggtagatccagatgtaacgg
gaggaaaggaggaacttggcagagtacagagaggggaaaacataaccagg
atatattatatgagggaaaaatatccattttcaataaaataaaataaaat
gaagatgtaaataaaaagaaagggaaaggaaaatgtacatggtaaagatg
cagcatgcatcctatctaagtcataattttttgttgttgttgtttaattg
ggttttattagttttttgggttttggttggttggttggtttgttttggaa
ccatcttcagtacttataatataagcctagagtcgcaaatcatccagcag
atcaataaaactatgagggaaaataatatgtgctcattggaagtgactaa
aattcttgcctttg
gaattcccaaaaactgtcctcagacctacacacaggatctgtggccagta
cataacataccagcacatgcgtgcgtgcaggcacacacacacacacacac
acacacacacacgcgcgcacacacacacacacactgtaaatagaataaaa
agatattcatgacagactatcaattattaaaaagcagttaggaaaaacag
aggtaatatatcagttatgcaaacttgcattcatgccaggcatggtggcg
cacgcctttaatcccagcacttgggaggcagaggcaggtagatttctgag
ttcgaggccagcttggtctacaaagtgagttccaggacagccagggctac
acagagaaaccctgtctcaaaaacaacaacaaaaaaaaaaaaaaaaaaaa
aaaacaattgcattcacatatttcaatgagcacaaatgcctgatgagatt
tcacacttttgatttatttcatggctttgttttatttaatttttgagtaa
ttttttccatttttattaggtatttagctcatttacatttccaatgctat
accaaaagtcccccgtacccacccacccccactcccctacccacccactc
cccatttttggccctggcgttccccagtactgggggcatataaagtttgc
gtgtccaatgggcctctctttccagtgatggccgactaggccatcttttg
atacatatgcagctagagtcaagagctccggggtactggttagttcataa
tgttgttccacctattggggttgcagatcctttagctccttgggtacttt
ctctagctcctccagtgactgagatgaaaggatggaccatgtagagactg
ccatatccagggatccaccccatgatcagcatccaaacgctgacaccatt
gcatagactaacaagatttttatcgaaaggacccagatgtagctgtctct
tgtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50609081_50609792
seq2: B6Ng01-163H18.b_45_758

seq1  GAATTCAGTGGCATCTTTGGAAGTTCCTAGTCTCACATTGTTGTAACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGCATCTTTGGAAGTTCCTAGTCTCACATTGTTGTAACAGG  50

seq1  ATTTTTCTTTTCTTAAAATTCCATCATATTATTTTTCATTTTATTGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTCTTAAAATTCCATCATATTATTTTTCATTTTATTGTGTA  100

seq1  CACGTATTTCCTCTGTCTTTTTACTCTACAAGTCCCTTGCTTGTGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATTTCCTCTGTCTTTTTACTCTACAAGTCCCTTGCTTGTGTCTTT  150

seq1  GAGTTTAGTGATTCTATGGGATTTCCTGAGTGAACAAGTTGGACTCAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGTGATTCTATGGGATTTCCTGAGTGAACAAGTTGGACTCAAAT  200

seq1  TCGAGTGCCCTCTCTTGGACTGTTGTATTTCTTTGCATTTCTGACTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTGCCCTCTCTTGGACTGTTGTATTTCTTTGCATTTCTGACTATTT  250

seq1  CCATGGTTAACTTTTGATTTATCTCATTATATTTCATTATTGTCCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTAACTTTTGATTTATCTCATTATATTTCATTATTGTCCTCAGA  300

seq1  AGCCTGTTTTCTAATGCGAGACAGAAAAGAGGTAGATCCAGATGTAACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTTTCTAATGCGAGACAGAAAAGAGGTAGATCCAGATGTAACGG  350

seq1  GAGGAAAGGAGGAACTTGGCAGAGTACAGAGAGGGGAAAACATAACCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGAGGAACTTGGCAGAGTACAGAGAGGGGAAAACATAACCAGG  400

seq1  ATATATTATATGAGGGAAAAATATCCATTTTCAATAAAATAAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATATGAGGGAAAAATATCCATTTTCAATAAAATAAAATAAAAT  450

seq1  GAAGATGTAAATAAAAAGAAAGGGAAAGGAAAATGTACATGGTAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTAAATAAAAAGAAAGGGAAAGGAAAATGTACATGGTAAAGATG  500

seq1  CAGCATGCATCCTATCTAAGTCATAATTTTTTGTTGTTGTTGTTTAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGCATCCTATCTAAGTCATAATTTTTTGTTGTTGTTGTTTAATTG  550

seq1  GGTTTTATTAGTTTTTTGGGTTTTGGTTGGTTGGTTGGTTTGTTTTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTAGTTTTTTGGGTTTTGGTTGGTTGGTTGGTTTGTTTTGGAA  600

seq1  CCATCTTCAGTACTTATAATATAAGCATAGAGTCGCAATATCATCCAGCA  650
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  CCATCTTCAGTACTTATAATATAAGCCTAGAGTCGCAA-ATCATCCAGCA  649

seq1  GATCAAT-AAACTATGAGGGAAAATAATATGTGCTCAGTGG-AGTGACT-  697
      ||||||| ||||||||||||||||||||||||||||| ||| ||||||| 
seq2  GATCAATAAAACTATGAGGGAAAATAATATGTGCTCATTGGAAGTGACTA  699

seq1  AAATTCTTGTCTTTG  712
      ||||||||| |||||
seq2  AAATTCTTGCCTTTG  714

seq1: chr15_50739357_50740311
seq2: B6Ng01-163H18.g_70_1026 (reverse)

seq1  TCTCACAAGAGACAGCTACATCTGGGTCCTTTCGAT-AAAATCTTGCTAG  49
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAAATCTTGTTAG  50

seq1  TATATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTG  99
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTATGCAATGGTGTCAGCGTTTGGATGCTGATCATGGGGTGGATCCCTG  100

seq1  GATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCCAATGGAGGA  149
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  GATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGTCACTGGAGGA  150

seq1  GCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAA-CCCTATAGGTG  198
      ||||||||||||||||||||||||||| |||||||||| ||| |||||||
seq2  GCTAGAGAAAGTACCCAAGGAGCTAAA-GGATCTGCAACCCCAATAGGTG  199

seq1  GAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGC  249

seq1  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  299

seq1  TTGGACACGCAAACTTTATATG-CCCCAGTACTGGGGAACGCCAGGGCCA  347
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTGGACACGCAAACTTTATATGCCCCCAGTACTGGGGAACGCCAGGGCCA  349

seq1  AAAATGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTACGGGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTACGGGGGA  399

seq1  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAT  449

seq1  GGAAAAAATTACTCAAAAATTAAATAAAACAAAGCCATGAAATAAATCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTACTCAAAAATTAAATAAAACAAAGCCATGAAATAAATCAA  499

seq1  AAGTGTGAAATCTCATCAGGCATTTGTGCTCATTGAAATATGTGAATGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAAATCTCATCAGGCATTTGTGCTCATTGAAATATGTGAATGCA  549

seq1  ATTGTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTTTTGAGACAGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTTTTTTTTTTTTTTTTTTTGTTGTTGTTTTTGAGACAGGGT  599

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAAGCTG  649

seq1  GCCTCGAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCTACCTGCCTCTGCCTCCCAAGTGCTGGGATTA  699

seq1  AAGGCGTGCGCCACCATGCCTGGCATGAATGCAAGTTTGCATAACTGATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCATGCCTGGCATGAATGCAAGTTTGCATAACTGATA  749

seq1  TATTACCTCTGTTTTTCCTAACTGCTTTTTAATAATTGATAGTCTGTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTCTGTTTTTCCTAACTGCTTTTTAATAATTGATAGTCTGTCAT  799

seq1  GAATATCTTTTTATTCTATTTACAGTGTGTGTGTGTGTGTGCGCGCGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTTTTTATTCTATTTACAGTGTGTGTGTGTGTGTGCGCGCGTGT  849

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGCACGCACGCATGTGCTGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGCCTGCACGCACGCATGTGCTGGT  899

seq1  ATGTTATGTACTGGCCACAGATCCTGTGTGTAGGTCTGAGGACAGTTTTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGTACTGGCCACAGATCCTGTGTGTAGGTCTGAGGACAGTTTTT  949

seq1  GGGAATTC  955
      ||||||||
seq2  GGGAATTC  957