BAC Information

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BAC

Clone NameB6Ng01-163J24
Chromosome15 (Build37)
Map Location 83,183,803 - 83,316,309
singlet/doubletdoublet
Overlap genePacsin2, LOC414359, Ttll1
Upstream geneNdufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26, Tcf20, Nfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3
Downstream geneBik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163J24.bB6Ng01-163J24.g
ACCDH956164DH956165
length1,1131,140
definitionDH956164|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J24, 5' end.DH956165|Mus musculus domesticus DNA, BAC clone: B6Ng01-163J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,315,201 - 83,316,309)(83,183,803 - 83,184,961)
sequence
gaattctataaagtcattaattcatgaaagttcatcttcatgttgatctg
aagtttgcccaagagggtgggctaatcacccaggaagtaatcacatcggg
ctctaggccgtgagggtctcccggtgtccactcacacgaggccacataaa
cggggactatggcagtgactaacatgagaaagcacatcaacagcaagaag
caaccctgagacagtctctggggccgtgcttcagcagagcacacccattg
cagccaagcaagatggcaggggccgtctcctgggagcgcacttgcccact
gctgctcttcctgcatggcgtctgccaggccagcatgtgggctcagcaag
taaaggtgactcccaccaaacctggtggcctaagctctgtccccaggacc
cacatggtagaaggagaaagctgacccctgcaagttgttctttgacttcc
atataacgaacaaacctcgccccagtaaaaaaatacgctgaggttcaaaa
catacttaagtgcccagaaatgcacttctcacagctcagtgacttggctt
aggaatcaggaggcctgatgttaaccccgtctctgcatacctgagcttgg
ggcagagtggaaggaagccgtggagaggagaggcagttccctttgcagga
tctattcctggtagcaagagctgcaggacacaggactatatctggttctt
cagacgtgaggtccaaggtgttcctcagcaccgcctcaggctgagtacag
ccatcaggcccttttctgccatccactaacactgggttccctgtctgaaa
tggggttagccctaccccacagggtgtgtgaagtgtttgcaggcaagagc
tgtctccctgaccaccctcctgggctggctgactagtttctccttttttt
ttttttttaggatttaatcatatataattatatcaaaatattttttattt
ttaattttttatttttaaaagatttttataccatatataatataccatat
aattatcttattataatatatcctatattatatacatatttatatattga
tatttatcccatataaaatacatatttatatggataataaaaaaaaaaat
cctaaaaaaaaaa
gaattcaggtgtggtggggcacacctttagttccaccactcaggaggcag
aggttggaggatctctgtgagtttgaggccagcctggtctacagagtgaa
tttcaggacagccagggctacacagagaattcctatctcaaaaagaaaaa
caacaacaacaacaaaacaacaacaaaaaagccaaactgaacccaaacaa
acaaaaactccaaaaaacgtaaaacaacaaagtgtgggtgtggtagtttc
tggtgagcttacttcacaacagtttctttgataaacaagtgtttatttca
aactcaatgttgtacaatgtatacaatattgtgagcacacagtatgcatg
tagatatataatattcacttttccatccatccatccatccatacatacat
acatacaaacatacaaaaaaccattacccgtaatgtgtgtggtatccact
gttgtgacaaacatttgagacaactgaaatgaataaagatttattttggc
tcatggctttgttccgtggttctttggccttatggctgtaggcctgaggc
aaaactgaacaccacagaaagaaacacttggcaaagaagagtgcttccct
catgatagaatggagactgggttgagggcaagatacagtctttcagtgtc
ccacatcctacaaataggcccgatgagctaactgtcaaactatgaaataa
tcagtggattaaacctctgatgtcatcacccttatgatacaataattctt
caacagtagcactttgctgaggaaccttcaacctatcagtgctttggggt
gatatttcatacccaaatgtgataaccatgaccacctaccggaagtgtcc
acacaaagtttccactgatgacattcaagtccctgggcttccttgatcca
gaggctactactacctatctggagaccacagccacactggggctggggct
gctgtctgggttggccctttacaaagcagtcatgttctagtacccttctt
ttgccaaaaataccctagtctgagaaggtgcctgtctttgttagatcata
tggggcattttgaattaccctgaggtgttgcacaaggtactggcttataa
tctttctttcttctgcagtctagcttcctcaagctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_83315201_83316309
seq2: B6Ng01-163J24.b_47_1159 (reverse)

seq1  TTTTTTTTTTAGGA-TTTATTTTTTATTAT-CATATATAATATGTATATT  48
      |||||||||||||| ||| ||||||||||| |||||| ||||||||| ||
seq2  TTTTTTTTTTAGGATTTTTTTTTTTATTATCCATATA-AATATGTATTTT  49

seq1  ATATATGATAATAATC-ATATAT-AATATGTATATTATATATGATATATT  96
      ||||  |||||  ||| |||||| ||||||||||| ||||| ||||||||
seq2  ATATGGGATAAATATCAATATATAAATATGTATATAATATAGGATATATT  99

seq1  AT-ATATGAT-ATTATAT-GTATATTATATATGATAATAAAAAATATATA  143
      || ||| ||| ||||||| |||||||||||||| | ||||||   || | 
seq2  ATAATAAGATAATTATATGGTATATTATATATGGT-ATAAAA---ATCTT  145

seq1  TAAAAAATAAAAAATAAAAAATAAAAAATATATATGATAT-ATTATATAT  192
      | ||||||||||||| ||||||||||||||| | |||||| |||||||||
seq2  TTAAAAATAAAAAATTAAAAATAAAAAATAT-TTTGATATAATTATATAT  194

seq1  GA-TAAATCCT-AAAAAAAAAAAAAAGGAGAAACTAGTCAGCCAGCCCAG  240
      || |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATCCTAAAAAAAAAAAAAAAGGAGAAACTAGTCAGCCAGCCCAG  244

seq1  GAGGGTGGTCAGGGAGACAGCTCTTGCCTGCAAACACTTCACACACCCTG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGTCAGGGAGACAGCTCTTGCCTGCAAACACTTCACACACCCTG  294

seq1  TGGGGTAGGGCTAACCCCATTTCAGACAGGGAACCCAGTGTTAGTGGATG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAGGGCTAACCCCATTTCAGACAGGGAACCCAGTGTTAGTGGATG  344

seq1  GCAGAAAAGGGCCTGATGGCTGTACTCAGCCTGAGGCGGTGCTGAGGAAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGGGCCTGATGGCTGTACTCAGCCTGAGGCGGTGCTGAGGAAC  394

seq1  ACCTTGGACCTCACGTCTGAAGAACCAGATATAGTCCTGTGTCCTGCAGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGACCTCACGTCTGAAGAACCAGATATAGTCCTGTGTCCTGCAGC  444

seq1  TCTTGCTACCAGGAATAGATCCTGCAAAGGGAACTGCCTCTCCTCTCCAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTACCAGGAATAGATCCTGCAAAGGGAACTGCCTCTCCTCTCCAC  494

seq1  GGCTTCCTTCCACTCTGCCCCAAGCTCAGGTATGCAGAGACGGGGTTAAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTTCCACTCTGCCCCAAGCTCAGGTATGCAGAGACGGGGTTAAC  544

seq1  ATCAGGCCTCCTGATTCCTAAGCCAAGTCACTGAGCTGTGAGAAGTGCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCCTCCTGATTCCTAAGCCAAGTCACTGAGCTGTGAGAAGTGCAT  594

seq1  TTCTGGGCACTTAAGTATGTTTTGAACCTCAGCGTATTTTTTTACTGGGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCACTTAAGTATGTTTTGAACCTCAGCGTATTTTTTTACTGGGG  644

seq1  CGAGGTTTGTTCGTTATATGGAAGTCAAAGAACAACTTGCAGGGGTCAGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTTTGTTCGTTATATGGAAGTCAAAGAACAACTTGCAGGGGTCAGC  694

seq1  TTTCTCCTTCTACCATGTGGGTCCTGGGGACAGAGCTTAGGCCACCAGGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTCTACCATGTGGGTCCTGGGGACAGAGCTTAGGCCACCAGGT  744

seq1  TTGGTGGGAGTCACCTTTACTTGCTGAGCCCACATGCTGGCCTGGCAGAC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGGAGTCACCTTTACTTGCTGAGCCCACATGCTGGCCTGGCAGAC  794

seq1  GCCATGCAGGAAGAGCAGCAGTGGGCAAGTGCGCTCCCAGGAGACGGCCC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCAGGAAGAGCAGCAGTGGGCAAGTGCGCTCCCAGGAGACGGCCC  844

seq1  CTGCCATCTTGCTTGGCTGCAATGGGTGTGCTCTGCTGAAGCACGGCCCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCTTGCTTGGCTGCAATGGGTGTGCTCTGCTGAAGCACGGCCCC  894

seq1  AGAGACTGTCTCAGGGTTGCTTCTTGCTGTTGATGTGCTTTCTCATGTTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGTCTCAGGGTTGCTTCTTGCTGTTGATGTGCTTTCTCATGTTA  944

seq1  GTCACTGCCATAGTCCCCGTTTATGTGGCCTCGTGTGAGTGGACACCGGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCCATAGTCCCCGTTTATGTGGCCTCGTGTGAGTGGACACCGGG  994

seq1  AGACCCTCACGGCCTAGAGCCCGATGTGATTACTTCCTGGGTGATTAGCC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCACGGCCTAGAGCCCGATGTGATTACTTCCTGGGTGATTAGCC  1044

seq1  CACCCTCTTGGGCAAACTTCAGATCAACATGAAGATGAACTTTCATGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTTGGGCAAACTTCAGATCAACATGAAGATGAACTTTCATGAAT  1094

seq1  TAATGACTTTATAGAATTC  1109
      |||||||||||||||||||
seq2  TAATGACTTTATAGAATTC  1113

seq1: chr15_83183803_83184961
seq2: B6Ng01-163J24.g_70_1209

seq1  GAATTCAGGTGTGGTGGGGCACACCTTTAGTTCCACCACTCAGGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGTGGTGGGGCACACCTTTAGTTCCACCACTCAGGAGGCAG  50

seq1  AGGTTGGAGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAA  100

seq1  TTTCAGGACAGCCAGGGCTACACAGAGAATTCCTATCTCAAAAAGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGACAGCCAGGGCTACACAGAGAATTCCTATCTCAAAAAGAAAAA  150

seq1  CAACAACAACAACAAAACAACAACAAAAAAGCCAAACTGAACCCAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACAACAACAAAACAACAACAAAAAAGCCAAACTGAACCCAAACAA  200

seq1  ACAAAAACTCCAAAAAACGTAAAACAACAAAGTGTGGGTGTGGTAGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACTCCAAAAAACGTAAAACAACAAAGTGTGGGTGTGGTAGTTTC  250

seq1  TGGTGAGCTTACTTCACAACAGTTTCTTTGATAAACAAGTGTTTATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCTTACTTCACAACAGTTTCTTTGATAAACAAGTGTTTATTTCA  300

seq1  AACTCAATGTTGTACAATGTATACAATATTGTGAGCACACAGTATGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAATGTTGTACAATGTATACAATATTGTGAGCACACAGTATGCATG  350

seq1  TAGATATATAATATTCACTTTTCCATCCATCCATCCATCCATACATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATATAATATTCACTTTTCCATCCATCCATCCATCCATACATACAT  400

seq1  ACATACAAACATACAAAAAACCATTACCCGTAATGTGTGTGGTATCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAAACATACAAAAAACCATTACCCGTAATGTGTGTGGTATCCACT  450

seq1  GTTGTGACAAACATTTGAGACAACTGAAATGAATAAAGATTTATTTTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACAAACATTTGAGACAACTGAAATGAATAAAGATTTATTTTGGC  500

seq1  TCATGGCTTTGTTCCGTGGTTCTTTGGCCTTATGGCTGTAGGCCTGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTTTGTTCCGTGGTTCTTTGGCCTTATGGCTGTAGGCCTGAGGC  550

seq1  AAAACTGAACACCACAGAAAGAAACACTTGGCAAAGAAGAGTGCTTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAACACCACAGAAAGAAACACTTGGCAAAGAAGAGTGCTTCCCT  600

seq1  CATGATAGAATGGAGACTGGGTTGAGGGCAAGATACAGTCTTTCAGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAGAATGGAGACTGGGTTGAGGGCAAGATACAGTCTTTCAGTGTC  650

seq1  CCACATCCTACAAATAGGCCCGATGAGCTAACTGTCAAACTATGAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTACAAATAGGCCCGATGAGCTAACTGTCAAACTATGAAATAA  700

seq1  TCAGTGGATTAAACCTCTGATGTCATCACCCTTATGATACAATAATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGATTAAACCTCTGATGTCATCACCCTTATGATACAATAATTCTT  750

seq1  CAACAGTAGCAC-TTGCTGAGGAACCTTCAACCTATCAGTGCTTTGGGGT  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAGCACTTTGCTGAGGAACCTTCAACCTATCAGTGCTTTGGGGT  800

seq1  GATATTTCATACCCAAATGTGATAACCATGACCACCTACCGGAAGTGT-C  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATATTTCATACCCAAATGTGATAACCATGACCACCTACCGGAAGTGTCC  850

seq1  ACACAAAG-TTCCACTGATGACATTCAAGTCCCTGGGCTTCCTTGATCCA  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTTTCCACTGATGACATTCAAGTCCCTGGGCTTCCTTGATCCA  900

seq1  GAGGCTACTACTACCTATCTGGAGACCACAGCCACACTGGGGCTGGGGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACTACTACCTATCTGGAGACCACAGCCACACTGGGGCTGGGGCT  950

seq1  GCTGTCT-GGCTGGCCCTTTACAAAGCAGTCATGTTCCTAGTACCCTTCC  996
      ||||||| || ||||||||||||||||||||||||| |||||||||||| 
seq2  GCTGTCTGGGTTGGCCCTTTACAAAGCAGTCATGTT-CTAGTACCCTTC-  998

seq1  TTTTGGCCAAATATACACTAGTTCTGAGAAAGGTGCCCTGGTTCTTGTTA  1046
       ||| |||||| |||| |||| |||||| ||||||||   ||  ||||||
seq2  -TTTTGCCAAAAATACCCTAG-TCTGAG-AAGGTGCC--TGTCTTTGTTA  1043

seq1  GATCAATTTTGGGGGCATTTTTGAATTACCCTGAGGTGGTTGCCACAAGG  1096
      |||||   |  |||||| ||||||||||||||||||| |||| |||||||
seq2  GATCA---TATGGGGCA-TTTTGAATTACCCTGAGGT-GTTG-CACAAGG  1087

seq1  TACTGGCTTTTATCTATCCTTTCTTTCTTCTGCCCAGGGTCTAGTCCTTC  1146
      ||||||||| ||   || |||||||||||||||     ||||||  ||||
seq2  TACTGGCTTATA---AT-CTTTCTTTCTTCTGC----AGTCTAG--CTTC  1127

seq1  CCTCAGCTGTCTG  1159
      |   |||||||||
seq2  CTCAAGCTGTCTG  1140