BAC Information

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BAC

Clone NameB6Ng01-164J04
Chromosome15 (Build37)
Map Location 28,620,406 - 28,747,869
singlet/doubletdoublet
Overlap geneLOC100040702, LOC667153
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J04.bB6Ng01-164J04.g
ACCDH956861DH956862
length9891,173
definitionDH956861|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J04, 5' end.DH956862|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,746,878 - 28,747,869)(28,620,406 - 28,621,201)
sequence
gaattcaatggtatgcttgctagcttattgtcaaactgacacaagtcaaa
gttgtctaaaaagaggcaagagcaactgagaatgtccctccataagactg
actattagaaagtctgttagagcattttcttaattagtgactggtgaatg
agggtcccatgcattgtggttagtactatgttggatagatgggtgttttg
ggtgcataaggaagcagggagagcaagccactaggagaaatcaaacaagc
atcactcccccatggcttctggttaagttcctgccttctttctgtcttta
gttccaggcatgtactccttcacctttggactgtgatgtgaaagtataag
taagtgaagttgctctttgtcatgctggttgatcacagcaatagaaaccc
taagataagtgatctctctggcacccatgttccatggaaatgcagaatgt
aattaaagtacaagctataatttctgccattctcttttctttggaagctt
tttattttttctcatttaacttttatctcaactttaccctaaatcattta
acattttgttttacctgcattaatatcttaaaacatgaatattataccag
ggtccgttcattcttgtaggacttaaagaaaagcctatggatgtctcacc
aacatgactgctaagcatgagctcaacaagaatagttgcatgggcaggag
aaaatctgagatgcctcaagcctacagaaactacaggcaactaaggaatt
ctgggagcaggaatgataatcatctacaactagactagacttctacaagt
aacaagtagactggactgtatgtatttatttatgaataaacacacacaca
cacacacacacacacacacacacacacacacacatgtatatacaattatg
aaaaaagccatggttctgaaagagatcaagtttatatatgtaagggattg
gatagaggaaagggcagaggttaagtatgtgattatatt
gaattctcacattgaaagtagaaaaagttaaatattgaacacaccagctt
cactcatcagttgtaccaatcatccaaagtataaatggtttacttaagct
attttaagtattagaataggggagaatgcttcccagtatactcttgaagg
ccagcattactcagatacctcaacatgacatgacaaggaacaaaggagtg
gagaagaacactgtaaattagtatccctgaaaatatgcatgcagaaatta
tcagaaaattacctctgaactgaattcatcttctcttttaaaaaaatatc
caccaaaactaagtattattcaagctggcattgtaagtgtggtttaaaaa
tgagccaattaataaattgctgtgtcatgttaacaaaataagatacaaaa
ccatatgatcatttcaattgatactgaaagggcattaggcagcattcact
tcatgattaaagactctgaacaaattaggcacgagggcaacataatcaag
atatgaagcccaacagctaaccgatactgagtaaaaagaagctgaaatct
ttgtaacgtccaggacaggcaaggagcccatctttactgcttttatcaac
aaatatctagaagctaaaccaaagcaatcaagaaaataaaaaggccactt
aaggctttagaacataccccagctgtcattaacaggagacaatgtgattt
tatatagagaaaagtcccaaagactccgacaaactaatagaacaaagaaa
taaatttaaccaagttgcagaaatttaaaaaatccatttaaaaatttaat
accctttctataaccccacagtaaattatctgaatagacattaataaaac
aattccatttataattgatgcaaaataatcccagtacgattgtgagctct
gcaaggacacttatgtatcaatgattctaggtagtcttttcacctattta
gaacaatgagatcaatcatcaagcttactaacatattagtttaaactata
tgtaagtgtcaaaaggagatgtcatgagacaaaaggcatagtccctggtg
ctaggctctcaaacttcatatggctttcataataatgaatgatttagtgg
attgggttctacaagggataaacacttaataaccggtggtgctagcatgt
taggaaacatatcgtccctcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28746878_28747869
seq2: B6Ng01-164J04.b_42_1030 (reverse)

seq1  AATATAATCACATTACTT-ACCTCTTCCCTTTCCTCTATCCAATCCCTTA  49
      |||||||||||| ||||| |||||| ||||||||||||||||||||||||
seq2  AATATAATCACA-TACTTAACCTCTGCCCTTTCCTCTATCCAATCCCTTA  49

seq1  CATATAATAAACCTTGATCTCTTTCAGAACCATGGCTTTTTTCATTAATT  99
      ||||| ||||| |||||||||||||||||||||||||||||||| |||||
seq2  CATAT-ATAAA-CTTGATCTCTTTCAGAACCATGGCTTTTTTCA-TAATT  96

seq1  GTATATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATACATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  146

seq1  GTGTTTATTCATAAATAAATACATACAGTCCAGTCTACTTGTTACTTGTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATTCATAAATAAATACATACAGTCCAGTCTACTTGTTACTTGTA  196

seq1  GAAGTCTAGTCTAGTTGTAGATGATTATCATTCCTGCTCCCAGAATTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAGTCTAGTTGTAGATGATTATCATTCCTGCTCCCAGAATTCCT  246

seq1  TAGTTGCCTGTAGTTTCTGTAGGCTTGAGGCATCTCAGATTTTCTCCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCCTGTAGTTTCTGTAGGCTTGAGGCATCTCAGATTTTCTCCTGC  296

seq1  CCATGCAACTATTCTTGTTGAGCTCATGCTTAGCAGTCATGTTGGTGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAACTATTCTTGTTGAGCTCATGCTTAGCAGTCATGTTGGTGAGA  346

seq1  CATCCATAGGCTTTTCTTTAAGTCCTACAAGAATGAACGGACCCTGGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATAGGCTTTTCTTTAAGTCCTACAAGAATGAACGGACCCTGGTAT  396

seq1  AATATTCATGTTTTAAGATATTAATGCAGGTAAAACAAAATGTTAAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATGTTTTAAGATATTAATGCAGGTAAAACAAAATGTTAAATGA  446

seq1  TTTAGGGTAAAGTTGAGATAAAAGTTAAATGAGAAAAAATAAAAAGCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTAAAGTTGAGATAAAAGTTAAATGAGAAAAAATAAAAAGCTTC  496

seq1  CAAAGAAAAGAGAATGGCAGAAATTATAGCTTGTACTTTAATTACATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAAGAGAATGGCAGAAATTATAGCTTGTACTTTAATTACATTCT  546

seq1  GCATTTCCATGGAACATGGGTGCCAGAGAGATCACTTATCTTAGGGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCATGGAACATGGGTGCCAGAGAGATCACTTATCTTAGGGTTTC  596

seq1  TATTGCTGTGATCAACCAGCATGACAAAGAGCAACTTCACTTACTTATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTGATCAACCAGCATGACAAAGAGCAACTTCACTTACTTATAC  646

seq1  TTTCACATCACAGTCCAAAGGTGAAGGAGTACATGCCTGGAACTAAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATCACAGTCCAAAGGTGAAGGAGTACATGCCTGGAACTAAAGAC  696

seq1  AGAAAGAAGGCAGGAACTTAACCAGAAGCCATGGGGGAGTGATGCTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAGGCAGGAACTTAACCAGAAGCCATGGGGGAGTGATGCTTGTT  746

seq1  TGATTTCTCCTAGTGGCTTGCTCTCCCTGCTTCCTTATGCACCCAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTCCTAGTGGCTTGCTCTCCCTGCTTCCTTATGCACCCAAAACA  796

seq1  CCCATCTATCCAACATAGTACTAACCACAATGCATGGGACCCTCATTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTATCCAACATAGTACTAACCACAATGCATGGGACCCTCATTCAC  846

seq1  CAGTCACTAATTAAGAAAATGCTCTAACAGACTTTCTAATAGTCAGTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTAATTAAGAAAATGCTCTAACAGACTTTCTAATAGTCAGTCTT  896

seq1  ATGGAGGGACATTCTCAGTTGCTCTTGCCTCTTTTTAGACAACTTTGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGACATTCTCAGTTGCTCTTGCCTCTTTTTAGACAACTTTGACT  946

seq1  TGTGTCAGTTTGACAATAAGCTAGCAAGCATACCATTGAATTC  992
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGTTTGACAATAAGCTAGCAAGCATACCATTGAATTC  989

seq1: chr15_28620406_28621201
seq2: B6Ng01-164J04.g_446_1238

seq1  TAACAAAATAAGATACAAAACCATATGATCATTTCAATTGATACTGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAATAAGATACAAAACCATATGATCATTTCAATTGATACTGAAAG  50

seq1  GGCATTAGGCAGCATTCACTTCATGATTAAAGACTCTGAACAAATTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTAGGCAGCATTCACTTCATGATTAAAGACTCTGAACAAATTAGGC  100

seq1  ACGAGGGCAACATAATCAAGATATGAAGCCCAACAGCTAACCGATACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGGCAACATAATCAAGATATGAAGCCCAACAGCTAACCGATACTGA  150

seq1  GTAAAAAGAAGCTGAAATCTTTGTAACGTCCAGGACAGGCAAGGAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGAAGCTGAAATCTTTGTAACGTCCAGGACAGGCAAGGAGCCCA  200

seq1  TCTTTACTGCTTTTATCAACAAATATCTAGAAGCTAAACCAAAGCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGCTTTTATCAACAAATATCTAGAAGCTAAACCAAAGCAATCA  250

seq1  AGAAAATAAAAAGGCCACTTAAGGCTTTAGAACATACCCCAGCTGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAAAAGGCCACTTAAGGCTTTAGAACATACCCCAGCTGTCATT  300

seq1  AACAGGAGACAATGTGATTTTATATAGAGAAAAGTCCCAAAGACTCCGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGACAATGTGATTTTATATAGAGAAAAGTCCCAAAGACTCCGAC  350

seq1  AAACTAATAGAACAAAGAAATAAATTTAACCAAGTTGCAGAAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATAGAACAAAGAAATAAATTTAACCAAGTTGCAGAAATTTAAAA  400

seq1  AATCCATTTAAAAATTTAATACCCTTTCTATAACCCCACAGTAAATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTAAAAATTTAATACCCTTTCTATAACCCCACAGTAAATTATC  450

seq1  TGAATAGACATTAATAAAACAATTCCATTTATAATTGATGCAAAATAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACATTAATAAAACAATTCCATTTATAATTGATGCAAAATAATC  500

seq1  CCAGTACGATTGTGAGCTCTGCAAGGACACTAATGTATCAATGATTCTAG  550
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAGTACGATTGTGAGCTCTGCAAGGACACTTATGTATCAATGATTCTAG  550

seq1  GTAGTCTTTTCACCTATTTAGAACAATGAGATCAATCATCAAGCTTACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTTCACCTATTTAGAACAATGAGATCAATCATCAAGCTTACTA  600

seq1  ACATATTAGTTTTAAAACTATATGTAAGTGTCAAAAGAGAATGTCATGAG  650
      ||||||||||||  |||||||||||||||||||||||   ||||||||||
seq2  ACATATTAGTTT--AAACTATATGTAAGTGTCAAAAGGAGATGTCATGAG  648

seq1  ACAAAAGGCATAGTCCCT-GTGCTAGGCTCTCAAACTTCATAT-GCTTTC  698
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  ACAAAAGGCATAGTCCCTGGTGCTAGGCTCTCAAACTTCATATGGCTTTC  698

seq1  ATCATTAATGAATGA-TTAGTGGTTTTGGTTCTACAAGGGAATAAACACT  747
      || | |||||||||| ||||||| || ||||||||||||| |||||||||
seq2  AT-AATAATGAATGATTTAGTGGATTGGGTTCTACAAGGG-ATAAACACT  746

seq1  TAATAAACAGT-GTGCTTAAGGCATGTTAGGGAACATATCGCCCCTCAGC  796
      |||||| | || |||||    |||||||||| ||||||||| ||||||||
seq2  TAATAACCGGTGGTGCT---AGCATGTTAGGAAACATATCGTCCCTCAGC  793