BAC Information

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BAC

Clone NameB6Ng01-164J20
Chromosome15 (Build37)
Map Location 82,631,378 - 82,732,542
singlet/doubletdoublet
Overlap geneTcf20
Upstream geneTef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164J20.bB6Ng01-164J20.g
ACCDH956893DH956894
length9541,105
definitionDH956893|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J20, 5' end.DH956894|Mus musculus domesticus DNA, BAC clone: B6Ng01-164J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,731,589 - 82,732,542)(82,631,378 - 82,632,485)
sequence
gaattcttggtgcagctctcattagatactctcagtacctattaagtgag
gtaacactagggggtcaggcatggaactcagcggggagaaatgagttgtc
caggccccccacacagcacaagagcactactacctgtctgctggtcatga
tttcaatgaatgtgtttcctctgtgtgataattcaaaggcatatggtagg
gtcccagcagatctggctgtaagaatggggcaagcttccatgtggtggtc
atctggatagtgttctgaaagggactgaaagagtagggagggggctaccg
tagggaaggaggcagggactggacccagtgtttctctgcatcctgttcct
cgtgagctctctggtatccttcttgtccccgtgaggcaaagtgagaccta
ggaagaagggagaatgaggaaatggtgtccctttatgaactggctgggga
tgccttcaacactgagtcaccaagaaggcacatctacattctcctccctc
ccacgccccttggtgcagaaaactttagaggtttccagttcctcccacct
ttctcatggcagtcttgacactagcagtagccaggctgtggtctcttaaa
agccttagtggctgagagtttgaaagaaacagaacaatgggaacagctag
agggcagggcctggcggtctattcagctttgccgctttgctccggaaggg
cttggcactttgcctgttgtcaaagaggtgtgggggagtcaaatctccgg
gaacagccagacctgcgttggactagcccctacttgatgaggtgggctgg
gagaaatcattaccttctccaccacatcctcttgatagggccctagaacc
aggatccctagctgtgcctggaattcaccataccctctgtgggtggccgg
aggctagggagagtggaagtactcttgctggatagaatgaaaggtaaagg
gtaa
gaattcttaaccttgctggtgtataactgtacacagctggtaggagcttg
ggctaactggaaatgttgaagttgccatgaatactgtgctggactgtcag
gtagacaacaagaaactaaagggcaggcttcgtgttagccaggggctccc
tgagacaagtgaagcagcccgggagtgagctcaatcagtcagagatctgg
ctccatcctccaagatatcctagaaaagacatagggatccaggcactcca
cagacacctgctcaggatggcatgaaggtttcttgcttcataagatggcc
ctcagattccagaaatgttcaggatggagttggggagggcatctcccagg
tgatctcgttctttagcaccaaggacaggttggtgatcaagtgtctctgt
ctcctggcaggaggcagagtatgaaccttgggtcaatggaaataccaagc
tcctactgctaagtccatatgcataaactctacatctagaagtgtcttgc
tatcttagaggagccctgtagttcttctcacccaaccctttgtctatgct
ttctacaatcctgttgcttgctttcatttgttatcccacttccctggaaa
ctctgtgggcaatagccacagtgtacaaccactcacatcaatatgctgga
aattcagaacaagataacattcatttggtgtggctatactagagagaaga
gtccatgcataatttagggatgagaaagccctatctttcttttttctttt
cctctttctcttccttccttcctttttttggacagggtttctcttttgta
gccctatcctagaacttgctctgtagaccaggctggccttgaactcaaga
gaacctctgcctcctcccgagtgctaaggattaaaggtgtgcaccaccac
tgcccagctagaagccttatatttcaatttcacaaatgtcacatgggaca
aattcactagtatggtatctctaaagtgctacacttcacgaatcatagca
tttggttaagacctgcaagcctgggtgacatttgtggaggccaccctgcc
ccataataacatcagtctctttgacatggccttggaacacagccatattg
gcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82731589_82732542
seq2: B6Ng01-164J20.b_46_999 (reverse)

seq1  TTACCCTTTCACCTTTCATTCTATCCAGCCAGAGTACTT-CACTCTCCCT  49
      ||||||||| ||||||||||||||||||| ||||||||| ||||||||||
seq2  TTACCCTTT-ACCTTTCATTCTATCCAGCAAGAGTACTTCCACTCTCCCT  49

seq1  AGCCTCAGGCCACCCACAGAGGGTCTGGTG-ATTCCAGGCACAGCTAGGG  98
      |||||| ||||||||||||||||| ||||| |||||||||||||||||||
seq2  AGCCTCCGGCCACCCACAGAGGGTATGGTGAATTCCAGGCACAGCTAGGG  99

seq1  ATCCTGGTTCTAGGGACCCTATCAGGAGGATGTGGTGGAGAAGGTAATGA  148
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  ATCCTGGTTCTAGGG-CCCTATCAAGAGGATGTGGTGGAGAAGGTAATGA  148

seq1  TTTCTCCCAGCCCACCTCATCAAGTAGGGGCTAGTCCAACGCAGGTCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAGCCCACCTCATCAAGTAGGGGCTAGTCCAACGCAGGTCTGG  198

seq1  CTGTTCCCGGAGATTTGACTCCCCCACACCTCTTTGACAACAGGCAAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCGGAGATTTGACTCCCCCACACCTCTTTGACAACAGGCAAAGT  248

seq1  GCCAAGCCCTTCCGGAGCAAAGCGGCAAAGCTGAATAGACCGCCAGGCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCCTTCCGGAGCAAAGCGGCAAAGCTGAATAGACCGCCAGGCCC  298

seq1  TGCCCTCTAGCTGTTCCCATTGTTCTGTTTCTTTCAAACTCTCAGCCACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTAGCTGTTCCCATTGTTCTGTTTCTTTCAAACTCTCAGCCACT  348

seq1  AAGGCTTTTAAGAGACCACAGCCTGGCTACTGCTAGTGTCAAGACTGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTTAAGAGACCACAGCCTGGCTACTGCTAGTGTCAAGACTGCCA  398

seq1  TGAGAAAGGTGGGAGGAACTGGAAACCTCTAAAGTTTTCTGCACCAAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGGTGGGAGGAACTGGAAACCTCTAAAGTTTTCTGCACCAAGGG  448

seq1  GCGTGGGAGGGAGGAGAATGTAGATGTGCCTTCTTGGTGACTCAGTGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGGGAGGGAGGAGAATGTAGATGTGCCTTCTTGGTGACTCAGTGTTG  498

seq1  AAGGCATCCCCAGCCAGTTCATAAAGGGACACCATTTCCTCATTCTCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATCCCCAGCCAGTTCATAAAGGGACACCATTTCCTCATTCTCCCT  548

seq1  TCTTCCTAGGTCTCACTTTGCCTCACGGGGACAAGAAGGATACCAGAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAGGTCTCACTTTGCCTCACGGGGACAAGAAGGATACCAGAGAG  598

seq1  CTCACGAGGAACAGGATGCAGAGAAACACTGGGTCCAGTCCCTGCCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGAGGAACAGGATGCAGAGAAACACTGGGTCCAGTCCCTGCCTCCT  648

seq1  TCCCTACGGTAGCCCCCTCCCTACTCTTTCAGTCCCTTTCAGAACACTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTACGGTAGCCCCCTCCCTACTCTTTCAGTCCCTTTCAGAACACTAT  698

seq1  CCAGATGACCACCACATGGAAGCTTGCCCCATTCTTACAGCCAGATCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGACCACCACATGGAAGCTTGCCCCATTCTTACAGCCAGATCTGC  748

seq1  TGGGACCCTACCATATGCCTTTGAATTATCACACAGAGGAAACACATTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCTACCATATGCCTTTGAATTATCACACAGAGGAAACACATTCA  798

seq1  TTGAAATCATGACCAGCAGACAGGTAGTAGTGCTCTTGTGCTGTGTGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCATGACCAGCAGACAGGTAGTAGTGCTCTTGTGCTGTGTGGGG  848

seq1  GGCCTGGACAACTCATTTCTCCCCGCTGAGTTCCATGCCTGACCCCCTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGACAACTCATTTCTCCCCGCTGAGTTCCATGCCTGACCCCCTAG  898

seq1  TGTTACCTCACTTAATAGGTACTGAGAGTATCTAATGAGAGCTGCACCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTCACTTAATAGGTACTGAGAGTATCTAATGAGAGCTGCACCAA  948

seq1  GAATTC  954
      ||||||
seq2  GAATTC  954

seq1: chr15_82631378_82632485
seq2: B6Ng01-164J20.g_67_1171

seq1  GAATTCTTAACCTTGCTGGTGTATAACTGTACACAGCTGGTAGGAGCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACCTTGCTGGTGTATAACTGTACACAGCTGGTAGGAGCTTG  50

seq1  GGCTAACTGGAAATGTTGAAGTTGCCATGAATACTGTGCTGGACTGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTGGAAATGTTGAAGTTGCCATGAATACTGTGCTGGACTGTCAG  100

seq1  GTAGACAACAAGAAACTAAAGGGCAGGCTTCGTGTTAGCCAGGGGCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAACAAGAAACTAAAGGGCAGGCTTCGTGTTAGCCAGGGGCTCCC  150

seq1  TGAGACAAGTGAAGCAGCCCGGGAGTGAGCTCAATCAGTCAGAGATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGTGAAGCAGCCCGGGAGTGAGCTCAATCAGTCAGAGATCTGG  200

seq1  CTCCATCCTCCAAGATATCCTAGAAAAGACATAGGGATCCAGGCACTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCCTCCAAGATATCCTAGAAAAGACATAGGGATCCAGGCACTCCA  250

seq1  CAGACACCTGCTCAGGATGGCATGAAGGTTTCTTGCTTCATAAGATGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCTGCTCAGGATGGCATGAAGGTTTCTTGCTTCATAAGATGGCC  300

seq1  CTCAGATTCCAGAAATGTTCAGGATGGAGTTGGGGAGGGCATCTCCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATTCCAGAAATGTTCAGGATGGAGTTGGGGAGGGCATCTCCCAGG  350

seq1  TGATCTCGTTCTTTAGCACCAAGGACAGGTTGGTGATCAAGTGTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCGTTCTTTAGCACCAAGGACAGGTTGGTGATCAAGTGTCTCTGT  400

seq1  CTCCTGGCAGGAGGCAGAGTATGAACCTTGGGTCAATGGAAATACCAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCAGGAGGCAGAGTATGAACCTTGGGTCAATGGAAATACCAAGC  450

seq1  TCCTACTGCTAAGTCCATATGCATAAACTCTACATCTAGAAGTGTCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGCTAAGTCCATATGCATAAACTCTACATCTAGAAGTGTCTTGC  500

seq1  TATCTTAGAGGAGCCCTGTAGTTCTTCTCACCCAACCCTTTGTCTATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGAGGAGCCCTGTAGTTCTTCTCACCCAACCCTTTGTCTATGCT  550

seq1  TTCTACAATCCTGTTGCTTGCTTTCATTTGTTATCCCACTTCCCTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACAATCCTGTTGCTTGCTTTCATTTGTTATCCCACTTCCCTGGAAA  600

seq1  CTCTGTGGGCAATAGCCACAGTGTACAACCACTCACATCAATATGCTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGGCAATAGCCACAGTGTACAACCACTCACATCAATATGCTGGA  650

seq1  AATTCAGAACAAGATAACATTCATTTGGTGTGGCTATACTAGAGAGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAACAAGATAACATTCATTTGGTGTGGCTATACTAGAGAGAAGA  700

seq1  GTCCATGCATAATTTAGGGATGAGAAAGCCCTATCTTTCTTTTTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGCATAATTTAGGGATGAGAAAGCCCTATCTTTCTTTTTTCTTTT  750

seq1  CCTCTTTCTCTTCCTTCCTTCCTTTTTTTGGACAGGGTTTCTC-TTTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCTCTTTCTCTTCCTTCCTTCCTTTTTTTGGACAGGGTTTCTCTTTTGTA  800

seq1  GCCCTATCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTTGAACTCAAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTATCCTAGAACTTGCTCTGTAGACCAGGCTGGCCTTGAACTCAAGA  850

seq1  GAACCTCTGCCTCCTCCCGAGTGCT-AGGATTAAAGGTGTGCACCACCAC  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAACCTCTGCCTCCTCCCGAGTGCTAAGGATTAAAGGTGTGCACCACCAC  900

seq1  TGCCCAGCTAGAAGCCTTATATTTCAATTTCACAAAATGTCACATGGGAC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCCCAGCTAGAAGCCTTATATTTCAATTTCAC-AAATGTCACATGGGAC  949

seq1  AAATTCACTAGTATTGTATCTCTAAAGTGCTACACTTCACGAATCATAGC  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAATTCACTAGTATGGTATCTCTAAAGTGCTACACTTCACGAATCATAGC  999

seq1  ATTTGGTAAAAGACATGCAAGCCTGGTGTGACATTTGTGGAAGCCACACC  1048
      |||||||  ||||| ||||||||||| |||||||||||||| ||||| ||
seq2  ATTTGGT-TAAGACCTGCAAGCCTGG-GTGACATTTGTGGAGGCCAC-CC  1046

seq1  TGCCCCATAATACCATCAGTCTCCTTTTGGACATGGCCTTGAGACACAG-  1097
      |||||||||||| ||||||||||   || ||||||||||||  |||||| 
seq2  TGCCCCATAATAACATCAGTCTC---TTTGACATGGCCTTGGAACACAGC  1093

seq1  CATATT-GCTTC  1108
      |||||| |||||
seq2  CATATTGGCTTC  1105