BAC Information

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BAC

Clone NameB6Ng01-165D21
Chromosome15 (Build37)11 (Build37)
Map Location 80,204,313 - 80,204,35380,891,036 - 80,891,581
singlet/doubletsingletsinglet
Overlap geneCacna1i
Upstream gene4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1
Downstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165D21.bB6Ng01-165D21.g
ACCDH957355DH957356
length822888
definitionDH957355|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D21, 5' end.DH957356|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,204,313 - 80,204,353)(80,891,036 - 80,891,581)
sequence
gaattcctgctggctggttcaactcagctcttatgactcaaactcctctc
caagctgactgattcggtttctctcagcttctgactgaattactctgctt
agacacaaactaactctggcaatctgtcctaatcttctagctccttattc
tctggctcattctgtctgcacctgaaacttgtctctgtaaaactgtcttg
gtaacactgcctcctctctgtgtgtctctctgtctctctctgtctctatc
tctgtctctctctcagttctttttaaagtcacctctcctttctgtgctgt
tctcatgagagttgggcgtatcctatctctgactcgttctgtcaattctt
tctctgatttgtcactttgtctgcccctcaattagatggcactttcaaac
atggctgcttccttctataaactaagcttattttattgtttaggattaag
ggtgtgtactaagggtgtattccagccagatcatactataatccagggca
tgtctgcatttcaggccagacctagaaggtctttgaatgtgatatcttgc
cagaggagccatgttgctgggttaaaattcctctacaactgaggatttgc
tttgcattcagtctgaaaatatactttttaatttccatcttcaaatcatt
gcagttgatgtgattatagatatgttgtatttttctgttatgttattaga
tgtattctatcagtctcctttgtttttctattctttttctctcaaatttt
ctggcttctatttgggctaatagaccacaggctttctctctctctctctc
tctctctctctctctctctctc
gaattcagctaggttggctggccagtggattccagggttctgtttgtgtc
tcccatcgcagtatagatatatggacatgtatcatcactgtgtgcattta
ttacgtaggtattagggactgtggtagtttgaaaagatatggccttcata
gactcctgtgtttgaacgtgtggttcatagggagtggcactgttagaagg
tgtggccttgttggagtggcccggaccttgttggaggaagtgtgtcgtgg
tgggggtgggctttggtctctcctaggctcaagctacacccagcgtggca
cacagtctcttgctgctgcctttcagatcaagatgtaaacctctcagctc
cttctccagcaccatgtctgcctgcactctaccatgtttccctccatgac
aatcaataatggactaaacctctgaaactgtagccagcctcagttcaatg
tttttattttataagagccgccttggtcatggtgtctcctcacagcaatg
gaaaccctgacttagacagggatcgaaactcaggcttacgcagcagtcac
tttaccaattgatccatctcctcagaccttgatttcgatggtgaggaaag
ggcactttggcttatatccctcagtgcttcacagaagccagtgcacctgt
gcaatcccctccctctccacccttcaggcccctgattgacttgggatatc
catctgtctataaaggaaatgctttcaggaagcacgattcgccttgctga
gccagcccacctcggcatttgctctcacagatggggagcacctcacagtg
cttgaacgagggccagaagacaaaggcccacagcttgcttaagaagacaa
ggtattcggtcagtggggtgcaccttcattttatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80204313_80204353
seq2: B6Ng01-165D21.b_825_865 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  41
      |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  41

seq1: chr11_80891036_80891581
seq2: B6Ng01-165D21.g_404_955 (reverse)

seq1  CCATATAAAATGAAGGTGCA-CCCACTGACCGAATGCCTTGTCTTCTTAA  49
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCATATAAAATGAAGGTGCACCCCACTGACCGAATACCTTGTCTTCTTAA  50

seq1  GC-AGCTGTGGGCCTTTGTCTTCTGGCCCTCGTTC-AGCACTGTGAGGTG  97
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCAAGCTGTGGGCCTTTGTCTTCTGGCCCTCGTTCAAGCACTGTGAGGTG  100

seq1  CTCCCCATCTGTGAGAGC-AATGCCGAGGTGGGCTGGCTCAGC-AGGCGA  145
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CTCCCCATCTGTGAGAGCAAATGCCGAGGTGGGCTGGCTCAGCAAGGCGA  150

seq1  ATCGTGCTTCCTGAAAGCATTTCCTTTATAGACAGATGGATATCCCAAGT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGCTTCCTGAAAGCATTTCCTTTATAGACAGATGGATATCCCAAGT  200

seq1  CAATCAGGGGCCTGAAGGGTGGAGAGGGAGGGGATTGCACAGGTGCACTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGGGGCCTGAAGGGTGGAGAGGGAGGGGATTGCACAGGTGCACTG  250

seq1  GCTTCTGTGAAGCACTGAGGGATATAAGCC-AAGTGCCCTTTCCTCACCA  294
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTCTGTGAAGCACTGAGGGATATAAGCCAAAGTGCCCTTTCCTCACCA  300

seq1  TCGAAATCAAGGTCTGAGGAGATGGATCAATTGGTAAAGTGACTGCTGCG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAATCAAGGTCTGAGGAGATGGATCAATTGGTAAAGTGACTGCTGCG  350

seq1  TAAGCCTGAGTTTCGATCCCTGTCTAAGTCAGGGTTTCCATTGCTGTGAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTGAGTTTCGATCCCTGTCTAAGTCAGGGTTTCCATTGCTGTGAG  400

seq1  GAGACACCATGACCAAGGCGGCTCTTATAAAATAAAAACATTGAACTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACCATGACCAAGGCGGCTCTTATAAAATAAAAACATTGAACTGAG  450

seq1  GCTGGCTACAGTTTCAGAGGTTTAGTCCATTATTGATTGTCATGGAGGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTACAGTTTCAGAGGTTTAGTCCATTATTGATTGTCATGGAGGGA  500

seq1  AACATGGTAGAGTGCAGGCAGACATGGTGCTGGAGAAGGAGCTGAGAGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTAGAGTGCAGGCAGACATGGTGCTGGAGAAGGAGCTGAGAGGT  550

seq1  TT  546
      ||
seq2  TT  552