BAC Information

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BAC

Clone NameB6Ng01-165M07
Chromosome15 (Build37)
Map Location 76,963,284 - 77,109,876
singlet/doubletdoublet
Overlap geneRbm9
Upstream genePlec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M07.bB6Ng01-165M07.g
ACCDH957739DH957740
length1,0161,029
definitionDH957739|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M07, 5' end.DH957740|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,963,284 - 76,964,294)(77,108,843 - 77,109,876)
sequence
gaattccattttgtggaggtggtgggaacgggatggtagtaaaaggctga
accattgcgtcaggagttgttgttggctcctggttaccctagagcaagca
acagaaaagaaagaggagtgagtgaataaatctttatcacacaggactct
tagcatgttctctcactatcccccgctcaggaagaaactgctaggatcat
cagataacttcattctttaaaaaatatcaactgataaaacttaattttat
gtgtgctttgcctgtgagcattatggtatggtgtggagttaggacaactt
gattctacatcctccttcaacatgagtccctgggatcaaactcagatttg
gtgataagtacctttctttacctgatgagccatcttgatagccaagagct
taatatttgatcatctcttccaaatcatttggtgctctgcctgtacccat
agttggtggcagaatatactgcttccaaggtcaagactgattagcattta
aacaggtgtgcaacagacaaaaattcaaactaaggtagactaatagatga
gcagagcctaaggattgcctttcagaaatcttcagaaagggtctattaag
aaacatatgaagctttaaagacacagttttccaagtttagattaggacca
aggaactttgcctctgtctctgacgctgctcttctttgaactctaaccgc
catttctccaccccatccctgatgggagtgagactgtggtccacaagcaa
acagcatcaatcatcccacagggccatttctgccagagctggcccagtca
actgaacaaacacatcaactagtggtggggattgggagcaggaaattctt
ctagggtatacccatagtctaggcacagcgagatgtaaccacggtaggac
tgtcgcccataagaggggtgcaatcctccatcagggaactagggctcctg
ttgacttagggaaatgtgactgatagcaacacttacacagctgtctatat
gctagactacagacct
gaattcaccctctcctcctgctctcaccagatgggatcatgggtgacaca
ctgaatttaccccctcctcccactctcaccagatgggggatcatgggtga
cacactgaattcaccccctcctcccactctcaccagatgggggatcatgg
gtgacacactgaattcaccccctcctcccgctctcaccagatgggatcat
gggtgacacactgaattcaccccttcctcctgctctcatcagatggggga
tcatgggtgacacactgaatccaccccctcctcccgctctcaccagatgg
gatcatgggtgacacactgaatttaccccctcctcccgctctcactgcag
ttgatctcactgcagctgtttccagctggcttctgcgttttgcccagggc
ccttgggatggctgcagtgactaacacagctgggctttttcctgtcatgg
tctgaatgtagaaacgatggaggaggcggcaaagggtgagttgggtacac
tatagtggattttttagtgaggatcattgcctcttcaggtttgttagtct
ttctttaaattgaggatctaagaggtagcattcattggtaggaggggaga
caaaggagccaattggagaaacccacatgtgcctcctctgctttttccct
gtccacattttgcctgatttatctatctttgaatcttttttatatgtgtg
gatattttgcctgtatgcttattaaccatgtgtatgcagtacctggaagg
ccagagaacgtgcagcatttcccctggaatagagttaagaatagctgtca
atcattttggtggtctggaagagcagcaagtgctcataactccaggcccc
actttttatttgagacagagtctctctgatagtcctggctgtcctggaac
actttataaactagatgtagaccagactagccttaaactcacagagatcc
actgggtactctgcctccaagtgctgggataataatggtgattaaagcaa
catgctgtgcttccctccatttttacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_76963284_76964294
seq2: B6Ng01-165M07.b_44_1059

seq1  GAATTCCATTTTGTGGAGGTGGTGGGAACGGGATGGTAGTAAAAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTGTGGAGGTGGTGGGAACGGGATGGTAGTAAAAGGCTGA  50

seq1  ACCATTGCGTCAGGAGTTGTTGTTGGCTCCTGGTTACCCTAGAGCAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCGTCAGGAGTTGTTGTTGGCTCCTGGTTACCCTAGAGCAAGCA  100

seq1  ACAGAAAAGAAAGAGGAGTGAGTGAATAAATCTTTATCACACAGGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAGAAAGAGGAGTGAGTGAATAAATCTTTATCACACAGGACTCT  150

seq1  TAGCATGTTCTCTCACTATCCCCCGCTCAGGAAGAAACTGCTAGGATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTTCTCTCACTATCCCCCGCTCAGGAAGAAACTGCTAGGATCAT  200

seq1  CAGATAACTTCATTCTTTAAAAAATATCAACTGATAAAACTTAATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACTTCATTCTTTAAAAAATATCAACTGATAAAACTTAATTTTAT  250

seq1  GTGTGCTTTGCCTGTGAGCATTATGGTATGGTGTGGAGTTAGGACAACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTTGCCTGTGAGCATTATGGTATGGTGTGGAGTTAGGACAACTT  300

seq1  GATTCTACATCCTCCTTCAACATGAGTCCCTGGGATCAAACTCAGATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACATCCTCCTTCAACATGAGTCCCTGGGATCAAACTCAGATTTG  350

seq1  GTGATAAGTACCTTTCTTTACCTGATGAGCCATCTTGATAGCCAAGAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAGTACCTTTCTTTACCTGATGAGCCATCTTGATAGCCAAGAGCT  400

seq1  TAATATTTGATCATCTCTTCCAAATCATTTGGTGCTCTGCCTGTACCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGATCATCTCTTCCAAATCATTTGGTGCTCTGCCTGTACCCAT  450

seq1  AGTTGGTGGCAGAATATACTGCTTCCAAGGTCAAGACTGATTAGCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGGCAGAATATACTGCTTCCAAGGTCAAGACTGATTAGCATTTA  500

seq1  AACAGGTGTGCAACAGACAAAAATTCAAACTAAGGTAGACTAATAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGTGCAACAGACAAAAATTCAAACTAAGGTAGACTAATAGATGA  550

seq1  GCAGAGCCTAAGGATTGCCTTTCAGAAATCTTCAGAAAGGGTCTATTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCTAAGGATTGCCTTTCAGAAATCTTCAGAAAGGGTCTATTAAG  600

seq1  AAACATATGAAGCTTTAAAGACACAG-TTTCCAAGTTTAGATTAGGACCA  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAACATATGAAGCTTTAAAGACACAGTTTTCCAAGTTTAGATTAGGACCA  650

seq1  AGGAAC-TTGCCTCTGTCTCTGACGCTGCTCTTC-TTGAACTCTAACCGC  697
      |||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGAACTTTGCCTCTGTCTCTGACGCTGCTCTTCTTTGAACTCTAACCGC  700

seq1  CA-TTCTCCACCCCATCCCTGATGGGAGTGAGACTGTGGTCCACAAGCAA  746
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCCACCCCATCCCTGATGGGAGTGAGACTGTGGTCCACAAGCAA  750

seq1  ACAGCATCAATCATCCCACAGGGCCATTTCTGCCAGAGCTGGCCCAGTCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATCAATCATCCCACAGGGCCATTTCTGCCAGAGCTGGCCCAGTCA  800

seq1  ACTGAACAAACACATCAACTAGTGGTGGGGATTGGGAGCAGGAAATGCTT  846
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGAACAAACACATCAACTAGTGGTGGGGATTGGGAGCAGGAAATTCTT  850

seq1  CTAGGGTATACCCATAGTCTAGGCACAGCGAGATGTAACCACGGTAGGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTATACCCATAGTCTAGGCACAGCGAGATGTAACCACGGTAGGAC  900

seq1  TGTCGCCCATAAGA-GGGTGCAATCCTCCATCAGGGAAC-AGGGCTCCTG  944
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  TGTCGCCCATAAGAGGGGTGCAATCCTCCATCAGGGAACTAGGGCTCCTG  950

seq1  TTGACTTAGGGAAATGTGACTGATAGCAACACTTACACAGCTGTCTATAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAGGGAAATGTGACTGATAGCAACACTTACACAGCTGTCTATAT  1000

seq1  GCTAAGACAACAGACCT  1011
      ||| |||| ||||||||
seq2  GCT-AGACTACAGACCT  1016

seq1: chr15_77108843_77109876
seq2: B6Ng01-165M07.g_69_1097 (reverse)

seq1  GGGGTAAAAAGTGGA-GGAAGCCAAGCATGGTGGCTTTAATCACACCTAT  49
      |||||||||| |||| ||||||  ||||| || |||||||||||   |||
seq2  GGGGTAAAAA-TGGAGGGAAGCACAGCAT-GTTGCTTTAATCACCATTAT  48

seq1  AATCCCAGCACTTGGGAGGCAGAGGTACCCAGTGGATCTCTGTGAGTTTT  99
       |||||||||||| ||||||||| |||||||||||||||||||||| |||
seq2  TATCCCAGCACTT-GGAGGCAGA-GTACCCAGTGGATCTCTGTGAG-TTT  95

seq1  AAGGCTAGTCTGGTCTACATCTAGTTTATAAAGTGTTCCAGGACAGCCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGTCTGGTCTACATCTAGTTTATAAAGTGTTCCAGGACAGCCAG  145

seq1  GACTATGCAGAGAGACTCTGTCTCAAATAAAAAGTGGGGCCTGGAGTTAT  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAT-CAGAGAGACTCTGTCTCAAATAAAAAGTGGGGCCTGGAGTTAT  194

seq1  GAGCACTTGCTGCTCTTCCAGACCACCAAAATGATTGACAGCTATTCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTGCTGCTCTTCCAGACCACCAAAATGATTGACAGCTATTCTTA  244

seq1  ACTCCTATTCCAGGGGAAATGCTGCACGTTCTCTGGCCTTCCAGGTACTG  299
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACT-CTATTCCAGGGGAAATGCTGCACGTTCTCTGGCCTTCCAGGTACTG  293

seq1  CATACACATGGTTAATAAGCATACAGGCAAAATATCCACACATATAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATGGTTAATAAGCATACAGGCAAAATATCCACACATATAAAAA  343

seq1  AGATTCAAAGATAGATAAATCAGGC-AAATGTGGACAGGGAAAAAGCAGA  398
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGATTCAAAGATAGATAAATCAGGCAAAATGTGGACAGGGAAAAAGCAGA  393

seq1  GGAGGCACATGTGGGTTTCTCCAATTGGCTCCTTTGTCTCCCCTCCTACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACATGTGGGTTTCTCCAATTGGCTCCTTTGTCTCCCCTCCTACC  443

seq1  AATGAATGCTACCTCTTAGATCCTCAATTTAAAGAAAGACTAACAAACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCTACCTCTTAGATCCTCAATTTAAAGAAAGACTAACAAACCT  493

seq1  GAAGAGGCAATGATCCTCACTAAAAAATCCACTATAGTGTACCCAACTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCAATGATCCTCACTAAAAAATCCACTATAGTGTACCCAACTCA  543

seq1  CCCTTTGCCGCCTCCTCCATCGTTTCTACATTCAGACCATGACAGGAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCCGCCTCCTCCATCGTTTCTACATTCAGACCATGACAGGAAAA  593

seq1  AGCCCAGCTGTGTTAGTCACTGCAGCCATCCCAAGGGCCCTGGGCAAAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCTGTGTTAGTCACTGCAGCCATCCCAAGGGCCCTGGGCAAAAC  643

seq1  GCAGAAGCCAGCTGGAAACAGCTGCAGTGAGATCAACTGCAGTGAGAGCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCCAGCTGGAAACAGCTGCAGTGAGATCAACTGCAGTGAGAGCG  693

seq1  GGAGGAGGGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGGGTAAATTCAGTGTGTCACCCATGATCCCATCTGGTGAGAG  743

seq1  CGGGAGGAGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGAGGGGGTGGATTCAGTGTGTCACCCATGATCCCCCATCTGATG  793

seq1  AGAGCAGGAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGAGGAAGGGGTGAATTCAGTGTGTCACCCATGATCCCATCTGG  843

seq1  TGAGAGCGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCCCCAT  893

seq1  CTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAGAGTGGGAGGAGGGGGTGAATTCAGTGTGTCACCCATGATCCC  943

seq1  CCATCTGGTGAGAGTGGGAGGAGGGGGTAAATTCAGTGTGTCACCCATGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGTGAGAGTGGGAGGAGGGGGTAAATTCAGTGTGTCACCCATGA  993

seq1  TCCCATCTGGTGAGAGCAGGAGGAGGGGGTGAATTC  1034
      ||||||||||||||||||||||||| ||||||||||
seq2  TCCCATCTGGTGAGAGCAGGAGGAGAGGGTGAATTC  1029