BAC Information

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BAC

Clone NameB6Ng01-165M17
Chromosome15 (Build37)
Map Location 102,952,892 - 103,066,418
singlet/doubletdoublet
Overlap geneLOC432989, Smug1, Cbx5
Upstream geneSpryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4
Downstream geneHnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165M17.bB6Ng01-165M17.g
ACCDH957758DH957759
length1,104309
definitionDH957758|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M17, 5' end.DH957759|Mus musculus domesticus DNA, BAC clone: B6Ng01-165M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,952,892 - 102,953,995)(103,066,110 - 103,066,418)
sequence
gaattctttgtgggaggattaccgaccacagcaactggttccagcatcct
tggtccaagtcccccaccacacattcacacacaagccagccaccagctgt
tcctctgttctctaccctccccctccatcattgccagaatacccattcct
tggcagattccagccacacacacacacacacacacacacacacacacaca
cacacacaccaatagacagactctttcacagcatccttgtaagagcctct
gtctgcccagtctggtcagtctaccttctctcctcccctagagttccccc
agcccctgacttctccttccctttaacatggccctggaatctctatgcaa
gaccctcctaccttagctatctcctgtgactgccagccctgcctctcttt
ctcagtatcgccccggctcccaatgttctggcttctgggacacttagccc
tggcccttcctaatgtccctctagtttctagcctgcccttcagaactccc
agatactgcctcaccctttgtcctttgtcatgttcttgggtcttgcttta
aaaggccacagctcaccccacaatcttgcacaaaagaaacagctgcagaa
gagtcccctgtttgcttgggtccatgataaaagtctctcatctctgaaag
tttgagatctcgcaggagaagggtctatagcagtaagagatagctaggag
gcttagagtgaaggacagaggtgtccaggagaaatggacaaggaggttgc
aggcaccctggccctgctccagtctgccttgatatttggagtctaaacca
tggtccacagcttcatctgttggcagtgagggtctgtaaatagagagagg
caagtcagggcaacagtaagaaggccatcattgtgccccgcacctcccct
tcccgggtggctcccacccccaaccccacttttctttagtttccaaatca
acctttcctgcaatataatgataaagcaggaagctgggccagaggacagt
gcagatttttcttcttgacaccgagtttccgatttaaggcgagagggaca
taatcctcctgtgcaattgcttgtgctccggctcatagccacttggggtg
gggg
tggtctaccatgcctggagtcccttactagggaataaacctggcatggtg
gtgctgacctgcaatctcagcagtagggatgtaatgggaagaggaccagt
caagtccattctcagctacatagcaagttgagggccattccacactctta
tgatagtctggctcaaatccaccccctccctcaacagacacacaaaagag
agaaaataggacagttcccattgatcaaattcataggtacttacagatct
acagtcagttttttgtttttggtttttcaagacagggtttctctgtatag
ccctggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102952892_102953995
seq2: B6Ng01-165M17.b_42_1145

seq1  GAATTCTTTGTGGGAGGATTACCGACCACAGCAACTGGTTCCAGCATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGGAGGATTACCGACCACAGCAACTGGTTCCAGCATCCT  50

seq1  TGGTCCAAGTCCCCCACCACACATTCACACACAAGCCAGCCACCAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCAAGTCCCCCACCACACATTCACACACAAGCCAGCCACCAGCTGT  100

seq1  TCCTCTGTTCTCTACCCTCCCCCTCCATCATTGCCAGAATACCCATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTCTCTACCCTCCCCCTCCATCATTGCCAGAATACCCATTCCT  150

seq1  TGGCAGATTCCAGCCACACACACACACACACACACACACACACACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATTCCAGCCACACACACACACACACACACACACACACACACACA  200

seq1  CACACACACCAATAGACAGACTCTTTCACAGCATCCTTGTAAGAGCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCAATAGACAGACTCTTTCACAGCATCCTTGTAAGAGCCTCT  250

seq1  GTCTGCCCAGTCTGGTCAGTCTACCTTCTCTCCTCCCCTAGAGTTCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGTCTGGTCAGTCTACCTTCTCTCCTCCCCTAGAGTTCCCCC  300

seq1  AGCCCCTGACTTCTCCTTCCCTTTAACATGGCCCTGGAATCTCTATGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGACTTCTCCTTCCCTTTAACATGGCCCTGGAATCTCTATGCAA  350

seq1  GACCCTCCTACCTTAGCTATCTCCTGTGACTGCCAGCCCTGCCTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCCTACCTTAGCTATCTCCTGTGACTGCCAGCCCTGCCTCTCTTT  400

seq1  CTCAGTATCGCCCCGGCTCCCAATGTTCTGGCTTCTGGGACACTTAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTATCGCCCCGGCTCCCAATGTTCTGGCTTCTGGGACACTTAGCCC  450

seq1  TGGCCCTTCCTAATGTCCCTCTAGTTTCTAGCCTGCCCTTCAGAACTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTCCTAATGTCCCTCTAGTTTCTAGCCTGCCCTTCAGAACTCCC  500

seq1  AGATACTGCCTCACCCTTTGTCCTTTGTCATGTTCTTGGGTCTTGCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGCCTCACCCTTTGTCCTTTGTCATGTTCTTGGGTCTTGCTTTA  550

seq1  AAAGGCCACAGCTCACCCCACAATCTTGCACAAAAGAAACAGCTGCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACAGCTCACCCCACAATCTTGCACAAAAGAAACAGCTGCAGAA  600

seq1  GAGTCCCCTGTTTGCTTGGGTCCATGATAAAAGTCTCTCATCTCTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCTGTTTGCTTGGGTCCATGATAAAAGTCTCTCATCTCTGAAAG  650

seq1  TTTGAGATCTCGCAGGAGAAGGGTCTATAGCAGTAAGAGATAGCTAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATCTCGCAGGAGAAGGGTCTATAGCAGTAAGAGATAGCTAGGAG  700

seq1  GCTTAGAGTGAAGGACAGAGGTGTCCAGGAGAAAGGGACAAGGAGGTTGC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTTAGAGTGAAGGACAGAGGTGTCCAGGAGAAATGGACAAGGAGGTTGC  750

seq1  AGGCACCCTGGCCCTGCTCCAGTCTGCCTTGATA-TTGGAGTCTAAACCA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCACCCTGGCCCTGCTCCAGTCTGCCTTGATATTTGGAGTCTAAACCA  800

seq1  TGGTCCACAGCTTCATCTGTTGGCAGTGAGGGTCTGGAAATAGAGAGAGG  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGTCCACAGCTTCATCTGTTGGCAGTGAGGGTCTGTAAATAGAGAGAGG  850

seq1  CAAGTCAGGGCCAACAGTAAGAAGGCCATCATTGTGCCCCGCACCTCCCC  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGGG-CAACAGTAAGAAGGCCATCATTGTGCCCCGCACCTCCCC  899

seq1  TTCCCGGGTGGCTCCCACCCCCAACCCCACTTTTCTTTAAGTTTCCAAAT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCCGGGTGGCTCCCACCCCCAACCCCACTTTTCTTT-AGTTTCCAAAT  948

seq1  CAACC-TTCCTGCAATAATAATGATAAAGCAGGAAGCTGGGCCAGAGGAC  998
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  CAACCTTTCCTGCAAT-ATAATGATAAAGCAGGAAGCTGGGCCAGAGGAC  997

seq1  AGTGCAGATTTTTCTTCTTGACACGGAGTTTCCGATTAAAGGC-AGAGGG  1047
      |||||||||||||||||||||||| |||||||||||| ||||| ||||||
seq2  AGTGCAGATTTTTCTTCTTGACACCGAGTTTCCGATTTAAGGCGAGAGGG  1047

seq1  ACATAAATCCTCCTGCGTAATTGC-TGTGCTCCGGCTCAAAGCCACTTGG  1096
      |||| |||||||||| | |||||| |||||||||||||| ||||||||||
seq2  ACAT-AATCCTCCTGTGCAATTGCTTGTGCTCCGGCTCATAGCCACTTGG  1096

seq1  GGGGGGGG  1104
      || |||||
seq2  GGTGGGGG  1104

seq1: chr15_103066110_103066418
seq2: B6Ng01-165M17.g_75_383 (reverse)

seq1  CAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACCAAAAACAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACCAAAAACAAAAA  50

seq1  ACTGACTGTAGATCTGTAAGTACCTATGAATTTGATCAATGGGAACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTAGATCTGTAAGTACCTATGAATTTGATCAATGGGAACTGTC  100

seq1  CTATTTTCTCTCTTTTGTGTGTCTGTTGAGGGAGGGGGTGGATTTGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTCTCTTTTGTGTGTCTGTTGAGGGAGGGGGTGGATTTGAGCC  150

seq1  AGACTATCATAAGAGTGTGGAATGGCCCTCAACTTGCTATGTAGCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATCATAAGAGTGTGGAATGGCCCTCAACTTGCTATGTAGCTGAGA  200

seq1  ATGGACTTGACTGGTCCTCTTCCCATTACATCCCTACTGCTGAGATTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTGACTGGTCCTCTTCCCATTACATCCCTACTGCTGAGATTGCA  250

seq1  GGTCAGCACCACCATGCCAGGTTTATTCCCTAGTAAGGGACTCCAGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCACCACCATGCCAGGTTTATTCCCTAGTAAGGGACTCCAGGCAT  300

seq1  GGTAGACCA  309
      |||||||||
seq2  GGTAGACCA  309