BAC Information

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BAC

Clone NameB6Ng01-166E24
Chromosome15 (Build37)
Map Location 79,689,722 - 79,878,384
singlet/doubletdoublet
Overlap geneLOC100042748, Apobec3, Cbx7, Pdgfb
Upstream geneGga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6
Downstream geneRpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166E24.bB6Ng01-166E24.g
ACCDH958127DH958128
length1,092766
definitionDH958127|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E24, 5' end.DH958128|Mus musculus domesticus DNA, BAC clone: B6Ng01-166E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,689,722 - 79,690,629)(79,877,620 - 79,878,384)
sequence
gaattcccctgtctctgcctctcatgtactgcgattacgggcgtgtgcca
tcagtgccaggtttctaatctgaacctttgaagtgggaagacatacctat
aattccacacttctgctggacgcttatataaggacatggaaaaggaaact
tccctctgtgcttgcttgctccagccttgctagcaagggtgttccttcac
tggcattagagcccattgtgtatactaaattaaccaactgagacaagagc
ccattgtgtatactaaattaaccaactgagacagccaacctcatggactg
aacaatcacaagattcttgaaccttccatttataggcagccattgttgga
ctagctagatcacagcctgtaagtcattctaaacaaatctctctctctct
ctctcatacacacacacacacacacacacacactttatatatatatataa
ataaattttgtatattacaaaataaatacatataatgtatatccatatat
atatacatacatatatatatatatatatatatatatatatatatatccac
atctatatgtctatatgtggatatatatatagagattttacatatatgta
tatatgtaaagagagagacattctataagttcttttactttagagaaccc
tgatgaatacattctgtcttcgtaactggagcagagagacaaagctactg
gcttgtgtggcatgttctacctccagatataacccggcagaattcccacc
ctgagcccgtgagctcaggtctgacccagcagtaccctgagttctgccaa
ttcctctgtcttccctgaagacatggaggaacagcacacggggcagtgag
ctcgagcatacgagacttacagaagcgaggagcctcccttctctggaatt
tctagaacattccccaagatctgcagacatcacatcctttttctattaca
ccagaacattacaaagctgaggcacggtggggtggggggggaagctgagg
caggaggattgctgcatgtttgatttttgagggcacatagggtttacttg
tctctaaaaggacaggtcgaacggaacgaatgcaagcaatgt
gaattccacaggagacctcaagcagtcactgcagtgtggccagatgaccc
ggggcttcctctgggactcacaatacctgttagttgctggctcattcata
accaggaccagactgtgggaaaaggtttaggcagctagggcggttggagc
aaggggcccaagggagtttctgagtattccaggtttgtaaagataaggat
gaccgagaacttctgatcctcctgcctccacctcctcagtggtaagatta
cagatgtggggggctggagagatggctcagtggttaagagcactgactgc
tcttccagttcaattcccagcaatcacctgtaatggggtttgatgcactt
ttctggtgtgtctagagaggtggccacctatatgcagacatgccccatat
gcatgtggggactttgtttgcctctcagggcctcaggttcctgactgtag
gataagtctgagtctgactcactggcttcagctggaacacagctgtgtac
tgccccacatgttgccagatgtgaatgagggagaacctggtgacactgtt
gatactggaccatctccaaaatgatcctgtcacacgctcaggtgagagaa
ttgctgattagcattggaattcatgtcctctgaaccttattctaggaact
gggggtgactaagtgtgggaggaaggggcagtccgtgtagtagaaacagc
cctccatccccattgctgtcaactcccacatttacaattctcagtaccta
tgaatctgtcactgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79689722_79690629
seq2: B6Ng01-166E24.b_208_1135

seq1  CTTGCTCCAGCCTTGCTAGCAAGGGTGTTCCTTCACTGGCATTAGAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCCAGCCTTGCTAGCAAGGGTGTTCCTTCACTGGCATTAGAGCCC  50

seq1  ATTGTGTATACTAAATTAACCAACTGAGACAAGAGCCCATTGTGTATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTATACTAAATTAACCAACTGAGACAAGAGCCCATTGTGTATACT  100

seq1  AAATTAACCAACTGAGACAGCCAACCTCATGGACTGAACAATCACAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACCAACTGAGACAGCCAACCTCATGGACTGAACAATCACAAGAT  150

seq1  TCTTGAACCTTCCATTTATAGGCAGCCATTGTTGGACTAGCTAGATCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACCTTCCATTTATAGGCAGCCATTGTTGGACTAGCTAGATCACA  200

seq1  GCCTGTAAGTCATTCTAAACAAATCTCTCTCTCTCTCTCTCATACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAAGTCATTCTAAACAAATCTCTCTCTCTCTCTCTCATACACACA  250

seq1  CACACACACACACACACACTTTATATATATATATAAATAAATTTTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTTTATATATATATATAAATAAATTTTGTATA  300

seq1  TTACAAAATAAATACATATAATGTATATCCATATATATATACATAC----  346
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  TTACAAAATAAATACATATAATGTATATCCATATATATATACATACATAT  350

seq1  --ATATATATATATATATATATATATATATATCCACATCTATATGTCTAT  394
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATCCACATCTATATGTCTAT  400

seq1  ATGTGGATATATATATAGAGATTTTACATATATGTATATATGTAAAGAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGATATATATATAGAGATTTTACATATATGTATATATGTAAAGAGA  450

seq1  GAGACATTCTATAAGTTCTTTTACTTTAGAGAACCCTGATGAATACATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTCTATAAGTTCTTTTACTTTAGAGAACCCTGATGAATACATTC  500

seq1  TGTCTTCGTAACTGGAGCAGAGAGACAAAGCTACTGGCTTGTGTGGCATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCGTAACTGGAGCAGAGAGACAAAGCTACTGGCTTGTGTGGCATG  550

seq1  TTCTACCTCCAGATATAACCCGGCAGAATTCCCACCCTGAGCCCGTGAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTCCAGATATAACCCGGCAGAATTCCCACCCTGAGCCCGTGAGC  600

seq1  TCAGGTCTGACCCAGCAGTACCCTGAGTTCTGCCAATTCCTCTGTCTTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCTGACCCAGCAGTACCCTGAGTTCTGCCAATTCCTCTGTCTTCC  650

seq1  CTGAAGACATGGAGGAACAGCACAC-GGGCAGTGAGCTCGAGCATACGAG  693
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGAAGACATGGAGGAACAGCACACGGGGCAGTGAGCTCGAGCATACGAG  700

seq1  ACTTACAGAAGC-AGGAGCCTCCCTTCCCTGGAATTTCTAGAACATTCCC  742
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  ACTTACAGAAGCGAGGAGCCTCCCTTCTCTGGAATTTCTAGAACATTCCC  750

seq1  CAAGAACTGCAGACATCACATCC-TTTTCCATTACACCAGAAACATTACA  791
      ||||| ||||||||||||||||| ||||| |||||||||| |||||||| 
seq2  CAAGATCTGCAGACATCACATCCTTTTTCTATTACACCAG-AACATTAC-  798

seq1  AAAGCTGAGGCACGGTGG---GTGGGGGGAAGCTGAGGCAGGAGGATTGC  838
      ||||||||||||||||||   | |||||||||||||||||||||||||||
seq2  AAAGCTGAGGCACGGTGGGGTGGGGGGGGAAGCTGAGGCAGGAGGATTGC  848

seq1  TGCAAGTTTGA-GTTTGAGGCAGCATAGGGTTTACATGTCTCCTAAAATG  887
      |||| ||||||  |||||||   |||||||||||| ||||| |||||| |
seq2  TGCATGTTTGATTTTTGAGGGCACATAGGGTTTACTTGTCT-CTAAAAGG  897

seq1  ACAGGTCGGACTG----------AGCAATGT  908
      |||||||| || |          ||||||||
seq2  ACAGGTCGAACGGAACGAATGCAAGCAATGT  928

seq1: chr15_79877620_79878384
seq2: B6Ng01-166E24.g_70_835 (reverse)

seq1  TCCAGTGACAGATTCATAGGTACTGAGAATTGT-AATGTGGGAGTTGACA  49
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAGTGACAGATTCATAGGTACTGAGAATTGTAAATGTGGGAGTTGACA  50

seq1  GCAATGGGGATGGAGGGCTGTTTCTACTACACGGACTGCCCCTTCCTCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGGATGGAGGGCTGTTTCTACTACACGGACTGCCCCTTCCTCCC  100

seq1  ACACTTAGTCACCCCCAGTTCCTAGAATAAGGTTCAGAGGACATGAATTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGTCACCCCCAGTTCCTAGAATAAGGTTCAGAGGACATGAATTC  150

seq1  CAATGCTAATCAGCAATTCTCTCACCTGAGCGTGTGACAGGATCATTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAATCAGCAATTCTCTCACCTGAGCGTGTGACAGGATCATTTTG  200

seq1  GAGATGGTCCAGTATCAACAGTGTCACCAGGTTCTCCCTCATTCACATCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGTCCAGTATCAACAGTGTCACCAGGTTCTCCCTCATTCACATCT  250

seq1  GGCAACATGTGGGGCAGTACACAGCTGTGTTCCAGCTGAAGCCAGTGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATGTGGGGCAGTACACAGCTGTGTTCCAGCTGAAGCCAGTGAGT  300

seq1  CAGACTCAGACTTATCCTACAGTCAGGAACCTGAGGCCCTGAGAGGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCAGACTTATCCTACAGTCAGGAACCTGAGGCCCTGAGAGGCAAA  350

seq1  CAAAGTCCCCACATGCATATGGGGCATGTCTGCATATAGGTGGCCACCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCCCACATGCATATGGGGCATGTCTGCATATAGGTGGCCACCTC  400

seq1  TCTAGACACACCAGAAAAGTGCATCAAACCCCATTACAGGTGATTGCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACACACCAGAAAAGTGCATCAAACCCCATTACAGGTGATTGCTGG  450

seq1  GAATTGAACTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTC  500

seq1  CAGCCCCCCACATCTGTAATCTTACCACTGAGGAGGTGGAGGCAGGAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCCACATCTGTAATCTTACCACTGAGGAGGTGGAGGCAGGAGGA  550

seq1  TCAGAAGTTCTCGGTCATCCTTATCTTTACAAACCTGGAATACTCAGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTCTCGGTCATCCTTATCTTTACAAACCTGGAATACTCAGAAA  600

seq1  CTCCCTTGGGCCCCTTGCTCCAACCGCCCTAGCTGCCTAAACCTTTTCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGGGCCCCTTGCTCCAACCGCCCTAGCTGCCTAAACCTTTTCCC  650

seq1  ACAGTCTGGTCCTGGTTATGAATGAGCCAGCAACTAACAGGTATTGTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGGTCCTGGTTATGAATGAGCCAGCAACTAACAGGTATTGTGAG  700

seq1  TCCCAGAGGAAGCCCCGGGTCATCTGGCCACACTGCAGTGACTGCTTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGAAGCCCCGGGTCATCTGGCCACACTGCAGTGACTGCTTGAG  750

seq1  GTCTCCTGTGGAATTC  765
      ||||||||||||||||
seq2  GTCTCCTGTGGAATTC  766