BAC Information

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BAC

Clone NameB6Ng01-166G22
Chromosome15 (Build37)
Map Location 84,802,770 - 84,954,924
singlet/doubletdoublet
Overlap gene5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b
Upstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50
Downstream geneRibc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166G22.bB6Ng01-166G22.g
ACCDH958217DH958218
length1,124519
definitionDH958217|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G22, 5' end.DH958218|Mus musculus domesticus DNA, BAC clone: B6Ng01-166G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,953,810 - 84,954,924)(84,802,770 - 84,803,290)
sequence
gaattctacttagaatcatttattgtaaagtggctatggacttatttatt
taatctcctttcagttatggtaaagaagcagattccagcaatgttaggga
cttgtcagactttctgaggacccatgctagcaggtgccactttactgtca
cagcctggtctctaagtgcatgaatgcagacttatcttttggttgttggt
ttattttggaaatatagccagaaacctccaaataattgtacttttgtcta
ggaatactgtcttggctggatgtggtggcgcacacctataattctagcac
ttggtaggtagacaggaaaatcaggaattcaaggtcatcctcagttgcat
agcaggtctgagcctagctgggccacatgagaccatgtccctttctcaaa
taaggagagtgagaaagcagggaagagattattctttatatgacatttca
ttagagatagtgtgttaatacagtgattgagttcatgaacagaagcttaa
ccgtgtgctctgtaccttgccctatccatgtataggcagaacattaccaa
aatctccttgaagaattgaaaataaacaagatacaactgatgcttttcca
actatattataatgaggaaaaaatcaatgttttaaacactgaattagagc
aaatggacgggaatttaagtgttgtaaaagacactctttctcaccatgaa
aacatatttaaagctaagaaaaaggattatggaatgttaactagacaact
acagcaaacagcaaaagaactgaagtaagtttttaaaataaatgttagca
gttaaaattgtttatggcttttatttaatctgagtgtgtattcatgtgtc
atgtgtgtatacttacccaccaactcatgcttactaaaacatgcatgtgg
aggccagaggatagcctgcaaaagtcagttctctcctcttaaccatgtag
gttctaggaactgaaatcaggttcattttgttagcaaatgcatttaccca
actgtgtttcatgtaagtggggaaattgttattgacatttagaagttgat
tgtttttgaaggagacagtcctggggacttagaaggcttccacccttggt
taggccaggtaccttttaccactg
cctcagaacctacatcaaaagccagatgtgacagtgtgggcatctggtcc
cagcactgggaggtgagacaggctagtgcctggggcttgctggcctgttt
ggctagatcagcaagcctgggattcagtgaggggaccctgtctcaaaaac
taaagacatgcagcatcaacctgcacacaccatgcatacacagccaaatt
aacaagggaccgagacagttctagcaactacagttagcaaatgccagaat
ttagtgctacataattactagaaaattgcttacagcaggagagccagaac
acagaaactgaacacacacacacacacacacacacacacgtatgtatgta
tgtatgtatgtatgtatgtatgtatgtatgtatatatatatatatatatt
gagaacctggctttttgggtttgttgtgaatgtgtaggaagactggtggg
gaaaaaaatccaagtgtctacagtggttctggagcattcccgtcttgcaa
gtttgtttgtccgtacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84953810_84954924
seq2: B6Ng01-166G22.b_44_1167 (reverse)

seq1  CAGTGGTAAA--GTA-CTTGCCT-ACCAAGTGT-GAAGC--TCTAAGTCC  43
      ||||||||||  ||| || |||| |||||| || |||||  |||||||||
seq2  CAGTGGTAAAAGGTACCTGGCCTAACCAAGGGTGGAAGCCTTCTAAGTCC  50

seq1  CCAGGACTGTCTCC-TCAAACAC-ATCAACTTCTAAATGTCAATAACATT  91
      |||||||||||||| ||||| || |||||||||||||||||||||||| |
seq2  CCAGGACTGTCTCCTTCAAAAACAATCAACTTCTAAATGTCAATAACAAT  100

seq1  TTCCCCACTTACATGAAACACAGTTGGGTAAATGCATTTGCTGACAAAAT  141
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTCCCCACTTACATGAAACACAGTTGGGTAAATGCATTTGCTAACAAAAT  150

seq1  GAACCTGATTTCAGTTCCTAGAACCTACATGGTTAAGAGGAGAGAACTGA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGATTTCAGTTCCTAGAACCTACATGGTTAAGAGGAGAGAACTGA  200

seq1  CTTTTGCAGGCTATCCTCTGGCCTCCACATGCATGTTTTAGTAAGCATGA  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAGGCTATCCTCTGGCCTCCACATGCATGTTTTAGTAAGCATGA  250

seq1  GTTGGTGGGTAAGTATACACACATGACACATGAATACACACTCAGATTAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGGTAAGTATACACACATGACACATGAATACACACTCAGATTAA  300

seq1  ATAAAAGCCATAAACAATTTTAACTGCTAACATTTATTTTAAAAACTTAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCCATAAACAATTTTAACTGCTAACATTTATTTTAAAAACTTAC  350

seq1  TTCAGTTCTTTTGCTGTTTGCTGTAGTTGTCTAGTTAACATTCCATAATC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTTTTGCTGTTTGCTGTAGTTGTCTAGTTAACATTCCATAATC  400

seq1  CTTTTTCTTAGCTTTAAATATGTTTTCATGGTGAGAAAGAGTGTCTTTTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTAGCTTTAAATATGTTTTCATGGTGAGAAAGAGTGTCTTTTA  450

seq1  CAACACTTAAATTCCCGTCCATTTGCTCTAATTCAGTGTTTAAAACATTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTAAATTCCCGTCCATTTGCTCTAATTCAGTGTTTAAAACATTG  500

seq1  ATTTTTTCCTCATTATAATATAGTTGGAAAAGCATCAGTTGTATCTTGTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCTCATTATAATATAGTTGGAAAAGCATCAGTTGTATCTTGTT  550

seq1  TATTTTCAATTCTTCAAGGAGATTTTGGTAATGTTCTGCCTATACATGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATTCTTCAAGGAGATTTTGGTAATGTTCTGCCTATACATGGA  600

seq1  TAGGGCAAGGTACAGAGCACACGGTTAAGCTTCTGTTCATGAACTCAATC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAAGGTACAGAGCACACGGTTAAGCTTCTGTTCATGAACTCAATC  650

seq1  ACTGTATTAACACACTATCTCTAATGAAATGTCATATAAAGAATAATCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAACACACTATCTCTAATGAAATGTCATATAAAGAATAATCTC  700

seq1  TTCCCTGCTTTCTCACTCTCCTTATTTGAGAAAGGGACATGGTCTCATGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCTTTCTCACTCTCCTTATTTGAGAAAGGGACATGGTCTCATGT  750

seq1  GGCCCAGCTAGGCTCAGACCTGCTATGCAACTGAGGATGACCTTGAATTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTAGGCTCAGACCTGCTATGCAACTGAGGATGACCTTGAATTC  800

seq1  CTGATTTTCCTGTCTACCTACCAAGTGCTAGAATTATAGGTGTGCGCCAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTCCTGTCTACCTACCAAGTGCTAGAATTATAGGTGTGCGCCAC  850

seq1  CACATCCAGCCAAGACAGTATTCCTAGACAAAAGTACAATTATTTGGAGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCAGCCAAGACAGTATTCCTAGACAAAAGTACAATTATTTGGAGG  900

seq1  TTTCTGGCTATATTTCCAAAATAAACCAACAACCAAAAGATAAGTCTGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGCTATATTTCCAAAATAAACCAACAACCAAAAGATAAGTCTGCA  950

seq1  TTCATGCACTTAGAGACCAGGCTGTGACAGTAAAGTGGCACCTGCTAGCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCACTTAGAGACCAGGCTGTGACAGTAAAGTGGCACCTGCTAGCA  1000

seq1  TGGGTCCTCAGAAAGTCTGACAAGTCCCTAACATTGCTGGAATCTGCTTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTCAGAAAGTCTGACAAGTCCCTAACATTGCTGGAATCTGCTTC  1050

seq1  TTTACCATAACTGAAAGGAGATTAAATAAATAAGTCCATAGCCACTTTAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATAACTGAAAGGAGATTAAATAAATAAGTCCATAGCCACTTTAC  1100

seq1  AATAAATGATTCTAAGTAGAATTC  1115
      ||||||||||||||||||||||||
seq2  AATAAATGATTCTAAGTAGAATTC  1124

seq1: chr15_84802770_84803290
seq2: B6Ng01-166G22.g_65_589

seq1  GAATTCCCTCAGAACCTACATCAAAAGCCAGATGTGACAGTGTGGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCAGAACCTACATCAAAAGCCAGATGTGACAGTGTGGGCATC  50

seq1  TGGTCCCAGCACTGGGAGGTGAGACAGGCTAGTGCCTGGGGCTTGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGCACTGGGAGGTGAGACAGGCTAGTGCCTGGGGCTTGCTGGC  100

seq1  CTGTTTGGCTAGATCAGCAAGCCTGGGATTCAGTGAGGGGACCCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGCTAGATCAGCAAGCCTGGGATTCAGTGAGGGGACCCTGTCTC  150

seq1  AAAAACTAAAGACATGCAGCATCAACCTGCACACACCATGCATACACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTAAAGACATGCAGCATCAACCTGCACACACCATGCATACACAGC  200

seq1  CAAATTAACAAGGGACCGAGACAGTTCTAGCAACTACAGTTAGCAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAACAAGGGACCGAGACAGTTCTAGCAACTACAGTTAGCAAATGC  250

seq1  CAGAATTTAGTGCTACATAATTACTAGAAAATTGCTTACAGCAGGAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTAGTGCTACATAATTACTAGAAAATTGCTTACAGCAGGAGAGC  300

seq1  CAGAACACAGAAACTGAACACACACACACACACACACACACACACGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACAGAAACTGAACACACACACACACACACACACACACACGTATG  350

seq1  TATGTATGTATGTATGTATGTATGTATGTATGTATGTATATATATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTATGTATGTATGTATGTATGTATGTATGTATATATATATATA  400

seq1  TATATTGAGAACCTGGCTTTTTGGGTTTGTTTGTAATGCATAGGAAGACT  450
      |||||||||||||||||||||||||||||||   ||||  ||||||||||
seq2  TATATTGAGAACCTGGCTTTTTGGGTTTGTTGTGAATGTGTAGGAAGACT  450

seq1  GG-GGGGAAAAAAATCCAAGTGTCTACAGTGGTTCTGGAGCATT-CCGTC  498
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTGGGGAAAAAAATCCAAGTGTCTACAGTGGTTCTGGAGCATTCCCGTC  500

seq1  -TGCAAGTTTG-TTGTCCGTACAGG  521
       |||||||||| |||||||||||||
seq2  TTGCAAGTTTGTTTGTCCGTACAGG  525