BAC Information

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BAC

Clone NameB6Ng01-167N06
Chromosome15 (Build37)
Map Location 22,156,683 - 22,355,045
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-167N06.bB6Ng01-167N06.g
ACCDH959223DH959224
length881960
definitionDH959223|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N06, 5' end.DH959224|Mus musculus domesticus DNA, BAC clone: B6Ng01-167N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,156,683 - 22,157,563)(22,354,521 - 22,355,045)
sequence
gaattcatttaattttaataattaaaatgcactcacatatactcagttac
taaacttgatcataaaaaaagagtttagagctatatggaaaattaagaaa
cacttgaaaatcaagtatttttccaaagtattaagtgtaggtaatctaat
tttgaaaagtaatatgtcaatcaatcaagtgaaatgcatttaatttcccc
aagtcactgagaaactatttcattaagccaaacataagaaatgattgatt
ctgctatccatatgcttaatagattttcaaacattttttagaaactatta
atattttcacaattgaaaacaattctttagagattctttagactttatat
gattaagtttggtttttacaatatttttttaaagattattcagacaaaaa
attctcaccgaaattatgttatacagtataaatcatctacactacctgtg
tttcacactgcatgtcatcttctttaacttacaaaaccaataatatgatg
cttttaatgtgtacaagtgctctttatgggtagaatactatttctgcaat
atactcttatcacgttacatggtcaaccaaagagcaggagatggagaaaa
tcagattgacttctctgtatttttattagtcctctgggaattctgtcaac
aaaggaaaagaagtgtagaagtgattgctacaattaatagaagtactttt
catcttacattgaaaattttgccaattgattagatttgatgagattatta
taaatgtaatatatatgcctctcaaaagaatctaatcaatatttccctga
agtaatttattatgcaccaaacattatctgaacaaaatatttctatgagt
ttgtatgtaggtgtatttgtgtgggtgtatg
gaattccagattgtgctggagaaaaaaaaatgctacatattacaactaga
attgtgagggtcacgtaagtaaaacttacaggttagcattcactgaaaag
cactggatgattgattctaaacaaatagccttgatatttttaaaagacac
acctaatttgactacaaaggaacttttatctccatgattattttagtctt
cagatttgctgcttttgatacttatcaaatatataaataagaaggagaat
tacaggactgaagatatgcaagtcatgtccagtaccacagtgagtcttag
aaatctaatattgtaacaagctacaatcaatgttgtttcgttgtatggaa
acttttgattactgggtagaaggattttcatagatacgaggctcatgttt
ccatttttttcttcaatggaataaccagaatgctaatagattctgagttc
caatcccactattttttattggttattttacttatttacatgtcaaaggt
tatcccccttcccagtttcccctcctcaaactccccatctccttgcctct
atgagggtgctctaccaccaccaaccccatacctgcctcaccactgcagc
atctccttatgctggggtatcaagcctcaacaggaccaagagcctcccct
cccattgatgccagaatagtctcttctctgctacgtatgtagctggagtt
atgggtttctccatgtgtactccttggatggtaagttctgggtggtcagg
ttaattgatattgttgttcttcctatggagttacaatccccttcagcccc
tttcagtccttcccctaactcttctattgggctcccggggctcactctgt
tggttggctatgagtatctgcttctgtattggtcagatgctggcagagac
tctcaggggacaaccaagtctggctcctgtcagcaagtacttcttggtat
ctgcatagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22156683_22157563
seq2: B6Ng01-167N06.b_48_928

seq1  GAATTCATTTAATTTTAATAATTAAAATGCACTCACATATACTCAGTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTAATTTTAATAATTAAAATGCACTCACATATACTCAGTTAC  50

seq1  TAAACTTGATCATAAAAAAAGAGTTTAGAGCTATATGGAAAATTAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGATCATAAAAAAAGAGTTTAGAGCTATATGGAAAATTAAGAAA  100

seq1  CACTTGAAAATCAAGTATTTTTCCAAAGTATTAAGTGTAGGTAATCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAAAATCAAGTATTTTTCCAAAGTATTAAGTGTAGGTAATCTAAT  150

seq1  TTTGAAAAGTAATATGTCAATCAATCAAGTGAAATGCATTTAATTTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGTAATATGTCAATCAATCAAGTGAAATGCATTTAATTTCCCC  200

seq1  AAGTCACTGAGAAACTATTTCATTAAGCCAAACATAAGAAATGATTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACTGAGAAACTATTTCATTAAGCCAAACATAAGAAATGATTGATT  250

seq1  CTGCTATCCATATGCTTAATAGATTTTCAAACATTTTTTAGAAACTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATCCATATGCTTAATAGATTTTCAAACATTTTTTAGAAACTATTA  300

seq1  ATATTTTCACAATTGAAAACAATTCTTTAGAGATTCTTTAGACTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCACAATTGAAAACAATTCTTTAGAGATTCTTTAGACTTTATAT  350

seq1  GATTAAGTTTGGTTTTTACAATATTTTTTTAAAGATTATTCAGACAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGTTTGGTTTTTACAATATTTTTTTAAAGATTATTCAGACAAAAA  400

seq1  ATTCTCACCGAAATTATGTTATACAGTATAAATCATCTACACTACCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACCGAAATTATGTTATACAGTATAAATCATCTACACTACCTGTG  450

seq1  TTTCACACTGCATGTCATCTTCTTTAACTTACAAAACCAATAATATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACTGCATGTCATCTTCTTTAACTTACAAAACCAATAATATGATG  500

seq1  CTTTTAATGTGTACAAGTGCTCTTTATGGGTAGAATACTATTTCTGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAATGTGTACAAGTGCTCTTTATGGGTAGAATACTATTTCTGCAAT  550

seq1  ATACTCTTATCACGTTACATGGTCAACCAAAGAGCAGGAGATGGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTATCACGTTACATGGTCAACCAAAGAGCAGGAGATGGAGAAAA  600

seq1  TCAGATTGACTTCTCTGTATTTTTATTAGTCCTCTGGGAATTCTGTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGACTTCTCTGTATTTTTATTAGTCCTCTGGGAATTCTGTCAAC  650

seq1  AAAGGAAAAGAAGTGTAGAAGTGATTGCTACAATTAATAGAAGTACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAAAGAAGTGTAGAAGTGATTGCTACAATTAATAGAAGTACTTTT  700

seq1  CATCTTACATTGAAAATTTTGCCAATTGATTAGATTTGATGAGATTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACATTGAAAATTTTGCCAATTGATTAGATTTGATGAGATTATTA  750

seq1  TAAATGTAATATATATGCCTCTCAAAAGAATCTAATCAATATTTCCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTAATATATATGCCTCTCAAAAGAATCTAATCAATATTTCCCTGA  800

seq1  AGTAATTTATTATGCACCAAACATTATCTGAACAAAATATTTCTATGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTTATTATGCACCAAACATTATCTGAACAAAATATTTCTATGAGT  850

seq1  TTGTATGTAGGTGTATTTGTGTGGGTGTATG  881
      |||||||||||||||||||||||||||||||
seq2  TTGTATGTAGGTGTATTTGTGTGGGTGTATG  881

seq1: chr15_22354521_22355045
seq2: B6Ng01-167N06.g_68_592 (reverse)

seq1  GGAGGGGAAACTGGGAAGGGGGATAACCTTTGACATGTAAATAAGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAACTGGGAAGGGGGATAACCTTTGACATGTAAATAAGTAAAA  50

seq1  TAACCAATAAAAAATAGTGGGATTGGAACTCAGAATCTATTAGCATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATAAAAAATAGTGGGATTGGAACTCAGAATCTATTAGCATTCTG  100

seq1  GTTATTCCATTGAAGAAAAAAATGGAAACATGAGCCTCGTATCTATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCATTGAAGAAAAAAATGGAAACATGAGCCTCGTATCTATGAAA  150

seq1  ATCCTTCTACCCAGTAATCAAAAGTTTCCATACAACGAAACAACATTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTACCCAGTAATCAAAAGTTTCCATACAACGAAACAACATTGAT  200

seq1  TGTAGCTTGTTACAATATTAGATTTCTAAGACTCACTGTGGTACTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTGTTACAATATTAGATTTCTAAGACTCACTGTGGTACTGGACA  250

seq1  TGACTTGCATATCTTCAGTCCTGTAATTCTCCTTCTTATTTATATATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCATATCTTCAGTCCTGTAATTCTCCTTCTTATTTATATATTTG  300

seq1  ATAAGTATCAAAAGCAGCAAATCTGAAGACTAAAATAATCATGGAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATCAAAAGCAGCAAATCTGAAGACTAAAATAATCATGGAGATAA  350

seq1  AAGTTCCTTTGTAGTCAAATTAGGTGTGTCTTTTAAAAATATCAAGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTTTGTAGTCAAATTAGGTGTGTCTTTTAAAAATATCAAGGCTA  400

seq1  TTTGTTTAGAATCAATCATCCAGTGCTTTTCAGTGAATGCTAACCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAGAATCAATCATCCAGTGCTTTTCAGTGAATGCTAACCTGTAA  450

seq1  GTTTTACTTACGTGACCCTCACAATTCTAGTTGTAATATGTAGCATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTTACGTGACCCTCACAATTCTAGTTGTAATATGTAGCATTTTT  500

seq1  TTTTCTCCAGCACAATCTGGAATTC  525
      |||||||||||||||||||||||||
seq2  TTTTCTCCAGCACAATCTGGAATTC  525