BAC Information

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BAC

Clone NameB6Ng01-168B08
Chromosome15 (Build37)
Map Location 19,299,675 - 19,409,968
singlet/doubletdoublet
Overlap geneEG666875
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneLOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168B08.bB6Ng01-168B08.g
ACCDH959415DH959416
length1,121949
definitionDH959415|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B08, 5' end.DH959416|Mus musculus domesticus DNA, BAC clone: B6Ng01-168B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,408,840 - 19,409,968)(19,299,675 - 19,300,321)
sequence
gaattcaccactgcatctttaagagggtgctctcccacccacccacccac
ccacctattcctgcctcatccctctagcatcccgcttctctgggatatca
agcctccactggaccaaacttctctgcccccactgatgctagcacctctc
aattatgttatcaaaatgaatccttcaatgcattaatccaatgattatgt
tagcatatttataattgatttatttcctaaaaacaccaacttgtgagcct
ttggaccttaaaaaaaaacaatttaatgtgtaatataatccaatagttta
tgggttaatagttctcagttaacaatatttggagattcttaaagccatta
gaagtgaagtctagttgaagaatataaagaattaagtcaagtctttagtg
acattccattctttcttactctttgtgtgtgacctgccttgaagcaagta
aagaagctctacctaagattataggctaagaaaccttgacctgaaattct
gaaaacatgaaccgcaataaatcttgccactctttagttgcatcacgtgt
ttgaccacagctcccaaatgataacaaacacagggccttttcatattaag
ccacagtgagatctcggatatctctaatataatgacatatatctgaacaa
taatatttgttccaggtattagctttcatattacttgagtggagatattt
ttccttacatttcagatagaataaaaaccatgttgttacagccagcatct
ctaatacttctaaggatgtatttaaatactgaaacaatagaatgtccttt
cctgtccgtaattctaacacacgcacgtgtgcacacgcacccccacacac
acccaaatagtagaaatttcccaatttagctgataatagaaaattagaga
taaaatacaaaacatggaaatattcattttatatttatcatattttatag
taggtcacagaagagttcaactctatagaataaaataattgacgtcagca
ggtacatgaatcatctataaaatcactgacttcagtgaaatctggtgaaa
aaaacagtttaattaaagaggataactaaacacatgaaaattcagtgcca
tatttaaagtaaggtgcaata
gaattcagggtaaacagttgcccagctattgtgttgcctagggcatattt
aaaagtatgaaggctatgtgtgtctttcatcccagaacataaatggtcta
agctggataaaaacccccacactgggattatttaaaactttttcctacac
ttctgacattatgatgagaaaaaatttcacgacaaactccctttagttat
ggctctaataaactttctgctctctcttccaaaatgttccctgagctgta
tattgttgggagccattaaggcaacgctattgtcctgatctctgaattgg
gcctcccccccccagaagaaaagagggtcaaaagcgggccaccggatgca
ccgctccaagaaagtcagcgccggatgtcctgacctcaagataccctgaa
acctccaagttcctgcttccccgtgtaactgcctaagaatgtgcaattct
attgccccccctcccactgataaatacttctccttttgcttgtattgccc
catccctcccgctgataagtatctgtacttccccgtttccttgtgcaatt
ctactgccccatccttcctgctgaaaggcacttccccatttgcttgtgta
tttaaaccttgggcctggctaatacattttggggtcttgatacaacttca
gaatggtttccatgttgttactggtacaagaccctcgtctctctctaccc
cccatttggttattaggaggaggtcccctcgagatcctcgaataactgga
cctgctggacaggtcagtatatgtaggagcttcataaatatagtcacttg
atcccggttttataactgcattttgattggttttagttttcttatagaaa
ccaggccggccgggcatggaggcacacacctttaatccctgcactcagag
gcagaggcagtggatttctgagttcaaggccagcctggtctacaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19408840_19409968
seq2: B6Ng01-168B08.b_45_1165 (reverse)

seq1  TATTGCACCTACTTTTTAATAT-GCACTGAAATTTTTTCATGTGTTTAGT  49
      ||||||||||   ||| ||||| ||||||||   ||||||||||||||||
seq2  TATTGCACCTTACTTTAAATATGGCACTGAA---TTTTCATGTGTTTAGT  47

seq1  TAT-CTCTATAAATTTAAACTGTTTTTTTTTCACCAGATTTCACTGAAGT  98
      ||| |||| |||  ||||||||  ||||||||||||||||||||||||||
seq2  TATCCTCTTTAA--TTAAACTG--TTTTTTTCACCAGATTTCACTGAAGT  93

seq1  CAGTGATTTTATAAGATGGTTCATGTACCTGCTGACGTTCAATTATTTTT  148
      |||||||||||| ||||| |||||||||||||||||| ||||||||||| 
seq2  CAGTGATTTTAT-AGATGATTCATGTACCTGCTGACG-TCAATTATTTTA  141

seq1  ATCTATAGAGTTGAACTCTTCTTGTGACCTACTATAAAATATGATAAATA  198
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCTATAGAGTTGAACTCTTC-TGTGACCTACTATAAAATATGATAAATA  190

seq1  TAAAATGAATATTTCCATGTTTTGTATTTTATCTCTAATTTTCTATTTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAAATGAATATTTCCATGTTTTGTATTTTATCTCTAATTTTCTA-TTAT  239

seq1  CAGCTAAATTGGGAAATTTCTACTATTT-GGTGTGTGTGGGGGTGCGTGT  297
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGCTAAATTGGGAAATTTCTACTATTTGGGTGTGTGTGGGGGTGCGTGT  289

seq1  GCACACGTGCGTGTGTTAGAATTACGGACAGGAAAGGACATTCTATTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACGTGCGTGTGTTAGAATTACGGACAGGAAAGGACATTCTATTGTT  339

seq1  TCAGTATTTAAATACATCCTTAGAAGTATTAGAGATGCTGGCTGTAACAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTTAAATACATCCTTAGAAGTATTAGAGATGCTGGCTGTAACAA  389

seq1  CATGGTTTTTATTCTATCTGAAATGTAAGGAAAAATATCTCCACTCAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTTTATTCTATCTGAAATGTAAGGAAAAATATCTCCACTCAAGT  439

seq1  AATATGAAAGCTAATACCTGGAACAAATATTATTGTTCAGATATATGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAAGCTAATACCTGGAACAAATATTATTGTTCAGATATATGTCA  489

seq1  TTATATTAGAGATATCCGAGATCTCACTGTGGCTTAATATGAAAAGGCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAGAGATATCCGAGATCTCACTGTGGCTTAATATGAAAAGGCCC  539

seq1  TGTGTTTGTTATCATTTGGGAGCTGTGGTCAAACACGTGATGCAACTAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTTATCATTTGGGAGCTGTGGTCAAACACGTGATGCAACTAAA  589

seq1  GAGTGGCAAGATTTATTGCGGTTCATGTTTTCAGAATTTCAGGTCAAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCAAGATTTATTGCGGTTCATGTTTTCAGAATTTCAGGTCAAGGT  639

seq1  TTCTTAGCCTATAATCTTAGGTAGAGCTTCTTTACTTGCTTCAAGGCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCCTATAATCTTAGGTAGAGCTTCTTTACTTGCTTCAAGGCAGG  689

seq1  TCACACACAAAGAGTAAGAAAGAATGGAATGTCACTAAAGACTTGACTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACAAAGAGTAAGAAAGAATGGAATGTCACTAAAGACTTGACTTA  739

seq1  ATTCTTTATATTCTTCAACTAGACTTCACTTCTAATGGCTTTAAGAATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTATATTCTTCAACTAGACTTCACTTCTAATGGCTTTAAGAATCT  789

seq1  CCAAATATTGTTAACTGAGAACTATTAACCCATAAACTATTGGATTATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATTGTTAACTGAGAACTATTAACCCATAAACTATTGGATTATAT  839

seq1  TACACATTAAATTGTTTTTTTTTAAGGTCCAAAGGCTCACAAGTTGGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTAAATTGTTTTTTTTTAAGGTCCAAAGGCTCACAAGTTGGTGT  889

seq1  TTTTAGGAAATAAATCAATTATAAATATGCTAACATAATCATTGGATTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAATAAATCAATTATAAATATGCTAACATAATCATTGGATTAA  939

seq1  TGCATTGAAGGATTCATTTTGATAACATAATTGAGAGGTGCTAGCATCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGAAGGATTCATTTTGATAACATAATTGAGAGGTGCTAGCATCAG  989

seq1  TGGGGGCAGAGAAGTTTGGTCCAGTGGAGGCTTGATATCCCAGAGAAGCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCAGAGAAGTTTGGTCCAGTGGAGGCTTGATATCCCAGAGAAGCG  1039

seq1  GGATGCTAGAGGGATGAGGCAGGAATAGGTGGGTGGGTGGGTGGGTGGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGATGCTAGAGGGATGAGGCAGGAATAGGTGGGTGGGTGGGTGGGTGGGA  1089

seq1  GAGCACCCTCTTAAAGATGCAGTGGTGAATTC  1129
      ||||||||||||||||||||||||||||||||
seq2  GAGCACCCTCTTAAAGATGCAGTGGTGAATTC  1121

seq1: chr15_19299675_19300321
seq2: B6Ng01-168B08.g_66_712

seq1  GAATTCAGGGTAAACAGTTGCCCAGCTATTGTGTTGCCTAGGGCATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTAAACAGTTGCCCAGCTATTGTGTTGCCTAGGGCATATTT  50

seq1  AAAAGTATGAAGGCTATGTGTGTCTTTCATCCCAGAACATAAATGGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATGAAGGCTATGTGTGTCTTTCATCCCAGAACATAAATGGTCTA  100

seq1  AGCTGGATAAAAACCCCCACACTGGGATTATTTAAAACTTTTTCCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATAAAAACCCCCACACTGGGATTATTTAAAACTTTTTCCTACAC  150

seq1  TTCTGACATTATGATGAGAAAAAATTTCACGACAAACTCCCTTTAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACATTATGATGAGAAAAAATTTCACGACAAACTCCCTTTAGTTAT  200

seq1  GGCTCTAATAAACTTTCTGCTCTCTCTTCCAAAATGTTCCCTGAGCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAATAAACTTTCTGCTCTCTCTTCCAAAATGTTCCCTGAGCTGTA  250

seq1  TATTGTTGGGAGCCATTAAGGCAACGCTATTGTCCTGATCTCTGAATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGGGAGCCATTAAGGCAACGCTATTGTCCTGATCTCTGAATTGG  300

seq1  GCCTCCCCCCCCCAGAAGAAAAGAGGGTCAAAAGCGGGCCACCGGATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCCCCCCAGAAGAAAAGAGGGTCAAAAGCGGGCCACCGGATGCA  350

seq1  CCGCTCCAAGAAAGTCAGCGCCGGATGTCCTGACCTCAAGATACCCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCAAGAAAGTCAGCGCCGGATGTCCTGACCTCAAGATACCCTGAA  400

seq1  ACCTCCAAGTTCCTGCTTCCCCGTGTAACTGCCTAAGAATGTGCAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAAGTTCCTGCTTCCCCGTGTAACTGCCTAAGAATGTGCAATTCT  450

seq1  ATTGCCCCCCCTCCCACTGATAAATACTTCTCCTTTTGCTTGTATTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCCCCCTCCCACTGATAAATACTTCTCCTTTTGCTTGTATTGCCC  500

seq1  CATCCCTCCCGCTGATAAGTATCTGTACTTCCCCGTTTCCTTGTGCAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCCGCTGATAAGTATCTGTACTTCCCCGTTTCCTTGTGCAATT  550

seq1  CTACTGCCCCATCCTTCCTGCTGAAAGGCACTTCCCCATTTGCTTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCCCCATCCTTCCTGCTGAAAGGCACTTCCCCATTTGCTTGTGTA  600

seq1  TTTAAACCTTGGGCCTGGCTAATACATTTTGGGGTCTTGATACAACT  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCTTGGGCCTGGCTAATACATTTTGGGGTCTTGATACAACT  647