BAC Information

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BAC

Clone NameB6Ng01-168M05
Chromosome15 (Build37)
Map Location 66,465,603 - 66,616,062
singlet/doubletdoublet
Overlap genePhf20l1, Tg, Sla
Upstream geneC920006C10Rik, Oc90, F930104E18Rik, LOC100040835, Kcnq3, Lrrc6, LOC100040860, Tmem71, LOC100040881
Downstream geneWisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-168M05.bB6Ng01-168M05.g
ACCDH959917DH959918
length1,1831,060
definitionDH959917|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M05, 5' end.DH959918|Mus musculus domesticus DNA, BAC clone: B6Ng01-168M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,465,603 - 66,466,787)(66,614,989 - 66,616,062)
sequence
gaattccaggacagccagacaggactacacagagaaattctgtcttgggg
gtgaggggagtaaggaatgaataaccctttggataatgacaagctctgta
tacctggttcacatcctactatttaaaaaaaaaaattagagctagtgttt
tgtgcacatagctaactgtagctgataagtgattctgctttcaatgtctg
ataatagtgtgagaggaattcattctatgagggtgtgttcttaactacca
taagatggactcacaaagagtgaggaggcagcagatgcaggatcaccttt
gctgctgtgcctcataacactttataacttgagacagtttttccttaagg
aaagtctaggtccttctaagtaacatatctggatagttttgaggcctttt
gctcattttcttctaatgccagaccatagttgcttaaagattaaaggaga
gagctttttttttaatgtaatgtaaatgttctgctcattcttcccaggat
ttgccccatctgcattctgaggcctcatcttttcctgtgagtcctaagtc
tggtgtgcctttgagttgctcttctgcttactctcttgtcctagccagac
agctttatttcatgggaaaatttctgtaccttttcatttctgtgactcca
ctcttcctttgcttcattctttacacctaatagcagcattcatattaatg
aagcagaacaatagcctctttcatgctgttttgcccctgaccaaaggcct
tgaataataggaattttattgacataccctcttccttagtatgttgacca
accattccagctataccaaagcataatctctaaatgaattatgatttctt
agacatccaggtattttagtttccctagaagatgcctttctatcattgcc
tgatggctagatttgagcctgctctttttggtacagtgcatgtgtactga
aactatcattattataaggtagaccttgggtcttaaagtcttcctgaatt
gggattcagtgtgtgtcaccaggcccagctataggcataggttttcagag
ggtattgctaccttgtcttcaacggcatggccaggattcaattccctaga
ctggtggagctaagaactaggtttctttctagtattgctctactatggga
aatttaagtgactattttccagaaattaaattg
gaattcctacaaggccagtggtggaggtggtggtggtgaaacagtaggct
tatctcatttttattttgctcctacagagtatgcagggtcagaggttttt
cctagtcttacattaccccctttctctgtcttgccctttggcttttgctt
tctcctccccgtcctatttcttttatattgtttctgctttttcacctgtc
tcctcctttattccattctctcaaccttttcctccttctccctctccttc
ttttgttcttgcttcatttttttcctgctgtgaacagtacatatgctttg
gaggtgcctgtgctataatccatggcttcattctctgacccatccaggta
cagttacatgaacgtatccctaatataatgtctctgctctcaaatggctc
tctgcctgctatactcttcagtcttctccttccctcccttttgcaacttg
gaagaacaaggctcagagatgcttgacgtaacgcaccatcagatcaaagc
aataacacatgcccaagtttggttaactctgatcccatatctgtgttctg
tccacaaataagactaaagttcatatccttcagtaaatagcaacattggt
gaacccctgtggccctttagcatcttggcctcatttttcccataccaaca
accagaggcctatactgttctggatctctgttttgttccccatattgcct
atagcatgcctggatccctgactgttgtgtacttccattcatagaagtgg
ctgatggtctatgctgtgtgctcaccacaccctgtctggcacagaacata
cctgctccaacatcccacccatcaccttgcaccagccctggttcacctgt
caccttgcgccagaagacctttgactggaagagggtatccaggtatgtgt
ttgtgtgtgcatatgtgcatgtgtgtgtgtgcacacatgtaccctcataa
acatatatgagcaccagatgtgggtgatcctgaacaagaaaattatgagc
agtactgcactactgttgctctgtggatcatgagcaggcacttcgaattc
gtgaacacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_66465603_66466787
seq2: B6Ng01-168M05.b_44_1226

seq1  GAATTCCAGGACAGCCAGACAGGACTACACAGAGAAATTCTGTCTTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGACAGGACTACACAGAGAAATTCTGTCTTGGGG  50

seq1  GTGAGGGGAGTAAGGAATGAATAACCCTTTGGATAATGACAAGCTCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGAGTAAGGAATGAATAACCCTTTGGATAATGACAAGCTCTGTA  100

seq1  TACCTGGTTCACATCCTACTATTTAAAAAAAAAAATTAGAGCTAGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTCACATCCTACTATTTAAAAAAAAAAATTAGAGCTAGTGTTT  150

seq1  TGTGCACATAGCTAACTGTAGCTGATAAGTGATTCTGCTTTCAATGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATAGCTAACTGTAGCTGATAAGTGATTCTGCTTTCAATGTCTG  200

seq1  ATAATAGTGTGAGAGGAATTCATTCTATGAGGGTGTGTTCTTAACTACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTGTGAGAGGAATTCATTCTATGAGGGTGTGTTCTTAACTACCA  250

seq1  TAAGATGGACTCACAAAGAGTGAGGAGGCAGCAGATGCAGGATCACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGACTCACAAAGAGTGAGGAGGCAGCAGATGCAGGATCACCTTT  300

seq1  GCTGCTGTGCCTCATAACACTTTATAACTTGAGACAGTTTTTCCTTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTGCCTCATAACACTTTATAACTTGAGACAGTTTTTCCTTAAGG  350

seq1  AAAGTCTAGGTCCTTCTAAGTAACATATCTGGATAGTTTTGAGGCCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAGGTCCTTCTAAGTAACATATCTGGATAGTTTTGAGGCCTTTT  400

seq1  GCTCATTTTCTTCTAATGCCAGACCATAGTTGCTTAAAGATTAAAGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTTCTTCTAATGCCAGACCATAGTTGCTTAAAGATTAAAGGAGA  450

seq1  GAGCTTTTTTTTTAATGTAATGTAAATGTTCTGCTCATTCTTCCCAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTTTTTTTAATGTAATGTAAATGTTCTGCTCATTCTTCCCAGGAT  500

seq1  TTGCCCCATCTGCATTCTGAGGCCTCATCTTTTCCTGTGAGTCCTAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCATCTGCATTCTGAGGCCTCATCTTTTCCTGTGAGTCCTAAGTC  550

seq1  TGGTGTGCCTTTGAGTTGCTCTTCTGCTTACTCTCTTGTCCTAGCCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCCTTTGAGTTGCTCTTCTGCTTACTCTCTTGTCCTAGCCAGAC  600

seq1  AGCTTTATTTCATGGGAAAATTTCTGTACCTTTTCATTTCTGTGACTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTTCATGGGAAAATTTCTGTACCTTTTCATTTCTGTGACTCCA  650

seq1  CTCTTCCTTTGCTTCATTCTTTACACCTAATAGCAGCATTCATATTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTTTGCTTCATTCTTTACACCTAATAGCAGCATTCATATTAATG  700

seq1  AAGCAGAACAATAGCCTCTTTCATGCTGTTTTGCCCCTGACCAAAGGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACAATAGCCTCTTTCATGCTGTTTTGCCCCTGACCAAAGGCCT  750

seq1  TGAATAATAGGAATTTTATTGACATACCCTCTTCCTTAGTATGTTGACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAATAGGAATTTTATTGACATACCCTCTTCCTTAGTATGTTGACCA  800

seq1  ACCATTCCAGCTATACCAAAGCATAATCTCTAAATGAATTATGATTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCCAGCTATACCAAAGCATAATCTCTAAATGAATTATGATTTCTT  850

seq1  AGACATCCAGGTATTTTAGTTTCCCTAGAAGATGCCTTTCTATCATTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCAGGTATTTTAGTTTCCCTAGAAGATGCCTTTCTATCATTGCC  900

seq1  TGATGGCTAGATTTGAGCCTGCTCTTTTTGGTACAGTGCATGTGTACTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTAGATTTGAGCCTGCTCTTTTTGGTACAGTGCATGTGTACTGA  950

seq1  AACTATCATTATTATAAGGTAGACCTTGGGTCTTAAAGTCTTCCTGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCATTATTATAAGGTAGACCTTGGGTCTTAAAGTCTTCCTGAATT  1000

seq1  GGGATTCAGGTGTGTGTCACCAGGCCCAGCTATAGGCATAGGTTTTCAGA  1050
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCA-GTGTGTGTCACCAGGCCCAGCTATAGGCATAGGTTTTCAGA  1049

seq1  GGGTTATGCCACC-TGTCTTCAAACGGCATGG-CAGGATTCATTTCCCTA  1098
      ||||  ||| ||| ||||||| |||||||||| ||||||||| |||||||
seq2  GGGTATTGCTACCTTGTCTTC-AACGGCATGGCCAGGATTCAATTCCCTA  1098

seq1  GACT-GTGGAGCCAAAGAACTAGGTTTCTTTCTAGTATGCCTTCTACTAT  1147
      |||| |||||| | ||||||||||||||||||||||||  | ||||||| 
seq2  GACTGGTGGAG-CTAAGAACTAGGTTTCTTTCTAGTATTGC-TCTACTA-  1145

seq1  TGAGAATTTTAAGTGACTATTTTCTAGATATTAAATTG  1185
      || ||| ||||||||||||||||| ||| |||||||||
seq2  TGGGAAATTTAAGTGACTATTTTCCAGAAATTAAATTG  1183

seq1: chr15_66614989_66616062
seq2: B6Ng01-168M05.g_66_1125 (reverse)

seq1  CTGTGTTCACCGAATTCGGAAGTTGCCCTTGCTCATGGTTCCACAGAGGC  50
      ||||||||| ||||||| |||| ||||  ||||||| | |||||||| ||
seq2  CTGTGTTCA-CGAATTC-GAAG-TGCC--TGCTCAT-GATCCACAGA-GC  43

seq1  AACAGTAGTGCCAGGTACTTGCTCATAAATTTTCTTGTTCCAGGATCACC  100
      |||||||||||   |||| ||||||| |||||||||||| ||||||||||
seq2  AACAGTAGTGC--AGTAC-TGCTCAT-AATTTTCTTGTT-CAGGATCACC  88

seq1  CACAATCTGGTGCTCATATATGTTTATGAGGGGTACATGTGTGCACACAC  150
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAC-ATCTGGTGCTCATATATGTTTATGA-GGGTACATGTGTGCACACAC  136

seq1  ACACATGCACATATGCACACACAAACACATACCTGGATACCCTCTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACATATGCACACACAAACACATACCTGGATACCCTCTTCCAG  186

seq1  TCAAAGGTCTTCTGGCGCAAGGTGACAGGTGAACCAGGGCTGGTGCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGTCTTCTGGCGCAAGGTGACAGGTGAACCAGGGCTGGTGCAAGG  236

seq1  TGATGGGTGGGATGTTGGAGCAGGTATGTTCTGTGCCAGACAGGGTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTGGGATGTTGGAGCAGGTATGTTCTGTGCCAGACAGGGTGTGG  286

seq1  TGAGCACACAGCATAGACCATCAGCCACTTCTATGAATGGAAGTACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACACAGCATAGACCATCAGCCACTTCTATGAATGGAAGTACACAA  336

seq1  CAGTCAGGGATCCAGGCATGCTATAGGCAATATGGGGAACAAAACAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGGATCCAGGCATGCTATAGGCAATATGGGGAACAAAACAGAGA  386

seq1  TCCAGAACAGTATAGGCCTCTGGTTGTTGGTATGGGAAAAATGAGGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAGTATAGGCCTCTGGTTGTTGGTATGGGAAAAATGAGGCCAA  436

seq1  GATGCTAAAGGGCCACAGGGGTTCACCAATGTTGCTATTTACTGAAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAAGGGCCACAGGGGTTCACCAATGTTGCTATTTACTGAAGGAT  486

seq1  ATGAACTTTAGTCTTATTTGTGGACAGAACACAGATATGGGATCAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTTAGTCTTATTTGTGGACAGAACACAGATATGGGATCAGAGTT  536

seq1  AACCAAACTTGGGCATGTGTTATTGCTTTGATCTGATGGTGCGTTACGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAACTTGGGCATGTGTTATTGCTTTGATCTGATGGTGCGTTACGTC  586

seq1  AAGCATCTCTGAGCCTTGTTCTTCCAAGTTGCAAAAGGGAGGGAAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTCTGAGCCTTGTTCTTCCAAGTTGCAAAAGGGAGGGAAGGAGA  636

seq1  AGACTGAAGAGTATAGCAGGCAGAGAGCCATTTGAGAGCAGAGACATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAGAGTATAGCAGGCAGAGAGCCATTTGAGAGCAGAGACATTAT  686

seq1  ATTAGGGATACGTTCATGTAACTGTACCTGGATGGGTCAGAGAATGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGATACGTTCATGTAACTGTACCTGGATGGGTCAGAGAATGAAGC  736

seq1  CATGGATTATAGCACAGGCACCTCCAAAGCATATGTACTGTTCACAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTATAGCACAGGCACCTCCAAAGCATATGTACTGTTCACAGCAG  786

seq1  GAAAAAAATGAAGCAAGAACAAAAGAAGGAGAGGGAGAAGGAGGAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATGAAGCAAGAACAAAAGAAGGAGAGGGAGAAGGAGGAAAAGG  836

seq1  TTGAGAGAATGGAATAAAGGAGGAGACAGGTGAAAAAGCAGAAACAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAATGGAATAAAGGAGGAGACAGGTGAAAAAGCAGAAACAATAT  886

seq1  AAAAGAAATAGGACGGGGAGGAGAAAGCAAAAGCCAAAGGGCAAGACAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATAGGACGGGGAGGAGAAAGCAAAAGCCAAAGGGCAAGACAGA  936

seq1  GAAAGGGGGTAATGTAAGACTAGGAAAAACCTCTGACCCTGCATACTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGTAATGTAAGACTAGGAAAAACCTCTGACCCTGCATACTCTG  986

seq1  TAGGAGCAAAATAAAAATGAGATAAGCCTACTGTTTCACCACCACCACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCAAAATAAAAATGAGATAAGCCTACTGTTTCACCACCACCACCT  1036

seq1  CCACCACTGGCCTTGTAGGAATTC  1074
      ||||||||||||||||||||||||
seq2  CCACCACTGGCCTTGTAGGAATTC  1060