BAC Information

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BAC

Clone NameB6Ng01-169I21
Chromosome15 (Build37)
Map Location 18,280,805 - 18,410,214
singlet/doubletdoublet
Overlap geneLOC666839
Upstream geneLOC100040162, LOC666835
Downstream geneCdh10, EG666857, EG666875
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-169I21.bB6Ng01-169I21.g
ACCDH960503DH960504
length1,0711,090
definitionDH960503|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I21, 5' end.DH960504|Mus musculus domesticus DNA, BAC clone: B6Ng01-169I21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,280,805 - 18,281,892)(18,409,094 - 18,410,214)
sequence
gaattcctattcagctgccagtattcagggtatgttggaatcccgaagaa
gtatacttcaatatagtgaaggaatatcacaggaaccggatagatggact
ctccagtgagagttagtgcaaacaggaaaaatgtaaaatcttccttcttc
tatggctctttaggtgggcatccaccagaaaaaatgttccagattacaga
taagtcttctgacctcagatgatcaagattaggtctgttctttcacataa
acatatttcaaccaagaaaaaattctcacaggtgtgcccggatttttctt
taattaattccagatatagtcatattgacaaccaagattagcaatcacag
aaacatatttacatatgcactaaggtcttatttcagaacatttctttcat
aatttaaaatttttactttatatttaaaattaatgtgccacagaacatac
atgatggtcagaggacaactagcagtagttgattcttatgtcatcactgc
agttcctgagataaagctcaggtcaacagtcttagagtcaagtaactaca
ctgagtcatctccctcgcccaagacatctcaataataaaatattctttat
atattaataaatactttggcttgggaaaagactacctatctcattatctg
tgatacaaacaaatctgcagaaccatataatttcagattatatcacactt
taatctttcattatgttgtccatataataatatagatccctctgtttctg
cctctgtaaatgtaaaagaatgatatctccttattagaatctccatccaa
tattgatcgttctccttcactgtgttaacagggcatcattaacaatgatc
ttggtaaatatcccattcttaattcatagtatagttctattggcactagt
cattgtgtgtactattaatatatagctttgataattatagcagagtttct
acaatttttgcttgagttcccaattcgttagatggtaaaccttttaaaaa
ttcagtcatgattactgtgttcagatctttgtcctatgactcttgccttc
attcataggggtgtaagaact
gaattccatgaacgctaaatctgaaattttatgaaagactgagcacagcc
gtgctttgctgattattaacattttttgacaaaaatatgtttttacttag
aaatattattcagcatgtcaacagagcagcaacaatttttttgatgactt
ttgcagtggtaacagtaacaacgattatctttgtgtaagctccatcacag
acatctgaagatgaaaataatcaaacaacaaaaataccaccaccagcagc
aataacaataacaaagaaatgaaactactatccccacatataaataattt
gtgctgtgcaccaccaggaacatgtagtcatttctgtgtcaatttacagc
ccccagactgtaccaggcaaagttactggataaggaaaatactaccagac
agggctatataaagacacatccactagtgtgttaactatacaaaaaaaaa
aacaaaaaaaaaaaccacaaaccaaaaaaaacaaacaaacaaacaaacaa
aaaacaggggttgggggagacactttagagtttacaaaaaatacacagcc
ttgttctccccgcccccttttatttaaaaggagtgaataaataggataaa
tctgcaacctacagattaggaaatatctgtaaaaacttccttcagttctg
tagttcctttagctctatatcctttttgcattctcctttcagctccgcag
ccttcattccatagggctgcttgtctgccacatctctcctagtttctttg
caacatcagcaatggctaaacctggatgttctttgattctagggaggtac
tcagaacagaacaagaaaaaggctgaaggaggcctcttgggtgcactggg
gtccttcagcatcctcttggtctccctttctgggggggatgtaggtttgc
atttctatttcataacaaccttgtcagccttgactgtctcacatttctct
tcatagcagacatggtcttctacgagcacttcttgagactctgagagtga
cagaatatctggctcgtctgtgctctgccgcaagttgccaagactcataa
gagtatttgcctctctgcttaatgacgaatctcctttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18280805_18281892
seq2: B6Ng01-169I21.b_45_1115

seq1  GAATTCCTATTCAGCTGCCAGTATTCAGGGTATGTTGGAATCCCGAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTCAGCTGCCAGTATTCAGGGTATGTTGGAATCCCGAAGAA  50

seq1  GTATACTTCAATATAGTGAAGGAATATCACAGGAACCGGATAGATGGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTCAATATAGTGAAGGAATATCACAGGAACCGGATAGATGGACT  100

seq1  CTCCAGTGAGAGTTAGTGCAAACAGGAAAAATGTAAAATCTTCCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGAGAGTTAGTGCAAACAGGAAAAATGTAAAATCTTCCTTCTTC  150

seq1  TATGGCTCTTTAGGTGGGCATCCACCAGAAAAAATGTTCCAGATTACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCTTTAGGTGGGCATCCACCAGAAAAAATGTTCCAGATTACAGA  200

seq1  TAAGTCTTCTGACCTCAGATGATCAAGATTAGGTCTGTTCTTTCACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTCTGACCTCAGATGATCAAGATTAGGTCTGTTCTTTCACATAA  250

seq1  ACATATTTCAACCAAGAAAAAATTCTCACAGGTGTGCCCGGATTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTCAACCAAGAAAAAATTCTCACAGGTGTGCCCGGATTTTTCTT  300

seq1  TAATTAATTCCAGATATAGTCATATTGACAACCAAGATTAGCAATCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTCCAGATATAGTCATATTGACAACCAAGATTAGCAATCACAG  350

seq1  AAACATATTTACATATGCACTAAGGTCTTATTTCAGAACATTTCTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATTTACATATGCACTAAGGTCTTATTTCAGAACATTTCTTTCAT  400

seq1  AATTTAAAATTTTTACTTTATATTTAAAATTAATGTGCCACAGAACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATTTTTACTTTATATTTAAAATTAATGTGCCACAGAACATAC  450

seq1  ATGATGGTCAGAGGACAACTAGCAGTAGTTGATTCTTATGTCATCACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTCAGAGGACAACTAGCAGTAGTTGATTCTTATGTCATCACTGC  500

seq1  AGTTCCTGAGATAAAGCTCAGGTCAACAGTCTTAGAGTCAAGTAACTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTGAGATAAAGCTCAGGTCAACAGTCTTAGAGTCAAGTAACTACA  550

seq1  CTGAGTCATCTCCCTCGCCCAAGACATCTCAATAATAAAATATTCTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATCTCCCTCGCCCAAGACATCTCAATAATAAAATATTCTTTAT  600

seq1  ATATTAATAAATACTTTGGCTTGGGAAAAGACTACCTATCTCATTATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATAAATACTTTGGCTTGGGAAAAGACTACCTATCTCATTATCTG  650

seq1  TGATACAAACAAATCTGCAGAACCATATAATTTCAGATTATATCACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAACAAATCTGCAGAACCATATAATTTCAGATTATATCACACTT  700

seq1  TAATCTTTCATTATGTTGTCCATATAATAATATAGATCCCTCTGTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTCATTATGTTGTCCATATAATAATATAGATCCCTCTGTTTCTG  750

seq1  CCTCTGTAAATGTAAAAGAATGATATCTCCTTATTAGAATCTCCATCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAAATGTAAAAGAATGATATCTCCTTATTAGAATCTCCATCCAA  800

seq1  TATTGATCGTTCTCCTTCACTGTGTTAACAGGGCATCATTAACAATGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATCGTTCTCCTTCACTGTGTTAACAGGGCATCATTAACAATGATC  850

seq1  TTGGTAAATATCCCATTCTTAATTCATAGTATAGTTCTATTGGCAACTAG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGGTAAATATCCCATTCTTAATTCATAGTATAGTTCTATTGGC-ACTAG  899

seq1  TCATTGTGTGTAACTATTTAATATATAGCTTTGATAATTATAGCAGAAGT  950
      ||||||||||| |||| ||||||||||||||||||||||||||||| |||
seq2  TCATTGTGTGT-ACTA-TTAATATATAGCTTTGATAATTATAGCAG-AGT  946

seq1  TTCTACAATTTTTGCTTGAGTTCCCAATTCGTTAAGATGGTAAAACCTTT  1000
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TTCTACAATTTTTGCTTGAGTTCCCAATTCGTT-AGATGGT-AAACCTTT  994

seq1  TAAAAAATTCAGTCAATTGATTTACTGTGTTTCAGAATCTTTGTCCCTAT  1050
      | |||||||||||||  ||| |||||||| ||||| |||||||| |||||
seq2  T-AAAAATTCAGTCA--TGA-TTACTGTG-TTCAG-ATCTTTGT-CCTAT  1037

seq1  GACTCTGCCTTTCATTTCAATTAAGGGGTGTAAGAACT  1088
      ||||||  | |||| ||||    |||||||||||||||
seq2  GACTCTTGCCTTCA-TTCA---TAGGGGTGTAAGAACT  1071

seq1: chr15_18409094_18410214
seq2: B6Ng01-169I21.g_67_1156 (reverse)

seq1  GGCAAAGGGAGATCTGCTAATAAGCAGAGAGGCAAAATGTACTCTTATGT  50
      |||||| ||||||  |  | ||||||||||||||||   |||||||||| 
seq2  GGCAAA-GGAGATTCGTCATTAAGCAGAGAGGCAAA---TACTCTTATG-  45

seq1  AGTCTTTGCGCAAACCTGGCGGGCAGAGCACAGAACGAAGCCCCAGGATG  100
      |||||| ||   ||| ||   |||||||||||| ||| ||||    ||| 
seq2  AGTCTTGGC---AACTTG--CGGCAGAGCACAG-ACG-AGCC---AGAT-  84

seq1  TTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCGTAAGGAAGACCA  150
       ||||||||   |||||||| ||| |||||||||||||||  ||||||||
seq2  ATTCTGTCA--CTCTCAGAG-TCT-CAAGAAGTGCTCGTA--GAAGACCA  128

seq1  TGTCTGCTAAAGGAAAGAGGAAATGTGAAGACAAGTCAAAGGCTGACAAG  200
      |||||||||     |||| |||||||| |||| |||| ||||||||||||
seq2  TGTCTGCTA---TGAAGA-GAAATGTG-AGAC-AGTC-AAGGCTGACAAG  171

seq1  GTTGGTTATGAAATAGAAATGCAAACCTACATCCCCCCCAGAAAGGGGAG  250
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTT-GTTATGAAATAGAAATGCAAACCTACATCCCCCCCAGAAA-GGGAG  219

seq1  ACCAAGAGGATGCTGAAGGACCCCAGTGCACCCAAGAGGCCTCCTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGGATGCTGAAGGACCCCAGTGCACCCAAGAGGCCTCCTTCAGC  269

seq1  CTTTTTCTTGTTCTGTTCTGAGTACCTCCCTAGAATCAAAGAACATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTGTTCTGTTCTGAGTACCTCCCTAGAATCAAAGAACATCCAG  319

seq1  GTTTAGCCATTGCTGATGTTGCAAAGAAACTAGGAGAGATGTGGCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCCATTGCTGATGTTGCAAAGAAACTAGGAGAGATGTGGCAGACA  369

seq1  AGCAGCCCTATGGAATGAAGGCTGCGGAGCTGAAAGGAGAATGCAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCTATGGAATGAAGGCTGCGGAGCTGAAAGGAGAATGCAAAAAG  419

seq1  GATATAGAGCTAAAGGAACTACAGAACTGAAGGAAGTTTTTACAGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAGCTAAAGGAACTACAGAACTGAAGGAAGTTTTTACAGATATT  469

seq1  TCCTAATCTGTAGGTTGCAGATTTATCCTATTTATTCACTCCTTTTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCTGTAGGTTGCAGATTTATCCTATTTATTCACTCCTTTTAAAT  519

seq1  AAAAGGGGGCGGGGAGAACAAGGCTGTGTATTTTTTGTAAACTCTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGGGCGGGGAGAACAAGGCTGTGTATTTTTTGTAAACTCTAAAGT  569

seq1  GTCTCCCCCAACCCCTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCCCAACCCCTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTTTTGG  619

seq1  TTTGTGGTTTTTTTTTTTGTTTTTTTTTTTGTATAGTTAACACACTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGTTTTTTTTTTTGTTTTTTTTTTTGTATAGTTAACACACTAGTG  669

seq1  GATGTGTCTTTATATAGCCCTGTCTGGTAGTATTTTCCTTATCCAGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTCTTTATATAGCCCTGTCTGGTAGTATTTTCCTTATCCAGTAAC  719

seq1  TTTGCCTGGTACAGTCTGGGGGCTGTAAATTGACACAGAAATGACTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTGGTACAGTCTGGGGGCTGTAAATTGACACAGAAATGACTACAT  769

seq1  GTTCCTGGTGGTGCACAGCACAAATTATTTATATGTGGGGATAGTAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGGTGGTGCACAGCACAAATTATTTATATGTGGGGATAGTAGTTT  819

seq1  CATTTCTTTGTTATTGTTATTGCTGCTGGTGGTGGTATTTTTGTTGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTGTTATTGTTATTGCTGCTGGTGGTGGTATTTTTGTTGTTTG  869

seq1  ATTATTTTCATCTTCAGATGTCTGTGATGGAGCTTACACAAAGATAATCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCATCTTCAGATGTCTGTGATGGAGCTTACACAAAGATAATCG  919

seq1  TTGTTACTGTTACCACTGCAAAAGTCATCAAAAAAATTGTTGCTGCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTGTTACCACTGCAAAAGTCATCAAAAAAATTGTTGCTGCTCTG  969

seq1  TTGACATGCTGAATAATATTTCTAAGTAAAAACATATTTTTGTCAAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGCTGAATAATATTTCTAAGTAAAAACATATTTTTGTCAAAAAA  1019

seq1  TGTTAATAATCAGCAAAGCACGGCTGTGCTCAGTCTTTCATAAAATTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAATCAGCAAAGCACGGCTGTGCTCAGTCTTTCATAAAATTTCA  1069

seq1  GATTTAGCGTTCATGGAATTC  1121
      |||||||||||||||||||||
seq2  GATTTAGCGTTCATGGAATTC  1090