BAC Information

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BAC

Clone NameB6Ng01-170O10
Chromosome15 (Build37)
Map Location 73,726,715 - 73,926,397
singlet/doubletdoublet
Overlap geneLOC100040966, EG666113, LOC100041307
Upstream gene1810044A24Rik, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276
Downstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-170O10.bB6Ng01-170O10.g
ACCDH961499DH961500
length1,1671,228
definitionDH961499|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O10, 5' end.DH961500|Mus musculus domesticus DNA, BAC clone: B6Ng01-170O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,925,438 - 73,926,397)(73,726,715 - 73,727,941)
sequence
gaattcactatctgaagtgaaagtcatgaggtaccatggggccagaacac
agagctgtcaagtgtgtggcaagaagttagacgataaggagaaactgatg
gggcctctctattacactgaacaccttctctagtacatggagtgccatgt
tgtctgaaggtgagttttggtaaacgagacccaagtgtggcaaacatcgg
gtcaacagatatcaaaagagaaagaattggggccaagaaagtcactggag
ggagatgatgacctcctaagaacatgcaacagaaagagagacagattaac
ccaacccaaacaaacagcaagtcatagattcaaagccagcctcacagagg
aaagcattttcaacaaggcacatggaataacttctgtagtcagcaacttt
tcatgggaattgtattacatctaaaagataaaaggcagacatttgtcagg
ccaggcagaaagagcaaaatgtggctatcagacatttatgagaatctgac
cttaaatatgaagtcgcatgtaattataaagtaaaaattcctgtgtcacc
tatactctatttaaaaaaatagtgttgttggggccacagtaacaccagaa
cagtagacaccaagtaaggaagaaagaaaggaaggaagaaagaaagaaag
aaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
caggaagagttggactgagctgctgtcaaaggggaaggtgaaagacaaag
ttggatggaaattaaaatgaacaagacaagaatggtttgtttagaaagat
caatagcatttaaatgcaccaaactagggtgtcatgaaaggagagaagct
gtgagtttccaaagtaaagaagaaagggggggcacccgttcagactccac
agatgcaggcagggagcgtgaatgaccagacaaactggtgctcctgacag
tctggagtaagagggacaatttcttgaagataataatcagtgaaaaggat
acagaaagtttagcacatctagatcactacattttttgcagaggatctga
gttgggaggagttttctgggtggaaccccaaacagggggcttcttgaagg
gttcactaaattacttttgttcggtctcattggaatcatataggaagagt
ggcaaatatcagctttg
gaattcagtacagtggaaaagggtggtgtggctgatgggccactgtgaag
tcaagggcttcaagccacaaagtactgccagcagtagacttggagcctat
ctattgcaggacaagaccctggaggcattaaggaccaatcagtgagatgc
cctgccctgtggaactcacatcctgaatgtgtgtgcatttgttacctttc
tactattgggacgatacatcacaacgaaggcagattatagaagaaagagc
tcatttaagcttttacgtcgggcggtggtggcatatacctttaatcccag
cttttagctccaacctgatagagaatcagcagacatgcaggaaagcacgg
tgggtagagtagcaagctgagatctcacatcttgaccacaggcatgaaaa
cagagaaggaattagaagaagaagggaaaggccttagactctcaaagctc
accctcagtgacatacttcccccagcaggacatcatccttctaagcgtcc
ccaaatagcaccatcaactggagaccaagtgttcaaatgttcaagattat
ggggatatcttattcaaatccaccacagtgcatgaccgtatacaacacat
ttcttaagtatggccttctagaaaagccagaggtgggagagacagaaagt
ggatgacgtggagaatgcagaactggggatcaggggcaaaattcaggagg
ggtccaaagggagatttgggcagaaataagaacgagatgcaagaggggac
catatggggacttggggtatctcaagtggcctgggcatgtagagtaggcc
tggttcacaggggcctcaggctgcagagtagagttaccacagtctctctg
cttcctttaagaggcagttctacacagttctctagagaccaggggatcct
aggcctgattctaatatcagctcttatacagactcatgtcttcagttttt
cacttaagctcaggggcccagtgcttaggactacaatcatggtggggctt
cttggtggttgtctaagtctgttgggcaattcctcagggaacaccagctc
tctccctggctccaatgattcagaaatactcaatcctccacctctgctga
acattaaattcatgcagggctggcagaaggcctttatttttgagactgct
ttgtatggaggggggcatttgctccatggctcctgggtgagagtagacac
gtcatgtctttgagaaggccgagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73925438_73926397
seq2: B6Ng01-170O10.b_255_1212 (reverse)

seq1  CAAAGCTGATATTTGCCACTCTTTCCTAT-GGATTCCATTTGAGACAG-A  48
      ||||||||||||||||||||| |||||||  |||||||  |||||| | |
seq2  CAAAGCTGATATTTGCCACTC-TTCCTATATGATTCCA-ATGAGACCGAA  48

seq1  CATAAGT-ATTTAGTAGACCCTTCAAGGAAGCCCCCTGTTTTGGGGTTCC  97
      || |||| |||||||  ||||||||| ||||||||||| |||||||||||
seq2  CAAAAGTAATTTAGTGAACCCTTCAA-GAAGCCCCCTG-TTTGGGGTTCC  96

seq1  ACCCAGAAACTCCCTCCCAACTCAGATCCTCTTGCAGACATGTGGTGATC  147
      |||||||||   ||||||||||||||||||||   | | |||| ||||||
seq2  ACCCAGAAAACTCCTCCCAACTCAGATCCTCTGCAAAAAATGTAGTGATC  146

seq1  TAGATGTGCTAGACTTTCTTGTATCCTTTTCACTGATTATTATCTTTCAA  197
      ||||||||||| |||||| ||||||||||||||||||||||||| |||||
seq2  TAGATGTGCTAAACTTTC-TGTATCCTTTTCACTGATTATTATC-TTCAA  194

seq1  GGAAATTGTCCCTCTTACTCCAGACTGTCAGGAGCACCAGTTTGTCTGGT  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GAAATTGTCCCTCTTACTCCAGACTGTCAGGAGCACCAGTTTGTCTGGT  243

seq1  CATTCACCGCTCCCCTGCCTGCATCTGTGGAGTCTGAACGGGTGCCCCCC  297
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTCA-CGCT-CCCTGCCTGCATCTGTGGAGTCTGAACGGGTGCCCCCC  291

seq1  CTTTCTTCTTTACTTTGGAAACTCACAGCTTCTCTCCTTTCATGACACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTACTTTGGAAACTCACAGCTTCTCTCCTTTCATGACACCC  341

seq1  TAGTTTGGTGCATTTAAATGCTATTGATCTTTCTAAACAAACCATTCTTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGGTGCATTTAAATGCTATTGATCTTTCTAAACAAACCATTCTTG  391

seq1  TCTTGTTCATTTTAATTTCCATCCAACTTTGTCTTTCACCTTCCCCTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCATTTTAATTTCCATCCAACTTTGTCTTTCACCTTCCCCTTTG  441

seq1  ACAGCAGCTCAGTCCAACTCTTCCTG----TTCTTTCTTTCTTTCTTTCT  493
      ||||||||||||||||||||||||||    ||||||||||||||||||||
seq2  ACAGCAGCTCAGTCCAACTCTTCCTGTTCTTTCTTTCTTTCTTTCTTTCT  491

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTT  541

seq1  CTTTCTTCCTTACTTGGTGTCTACTGTTCTGGTGTTACTGTGGCCCCAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTACTTGGTGTCTACTGTTCTGGTGTTACTGTGGCCCCAAC  591

seq1  AACACTATTTTTTTAAATAGAGTATAGGTGACACAGGAATTTTTACTTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTATTTTTTTAAATAGAGTATAGGTGACACAGGAATTTTTACTTTA  641

seq1  TAATTACATGCGACTTCATATTTAAGGTCAGATTCTCATAAATGTCTGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACATGCGACTTCATATTTAAGGTCAGATTCTCATAAATGTCTGAT  691

seq1  AGCCACATTTTGCTCTTTCTGCCTGGCCTGACAAATGTCTGCCTTTTATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATTTTGCTCTTTCTGCCTGGCCTGACAAATGTCTGCCTTTTATC  741

seq1  TTTTAGATGTAATACAATTCCCATGAAAAGTTGCTGACTACAGAAGTTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATGTAATACAATTCCCATGAAAAGTTGCTGACTACAGAAGTTAT  791

seq1  TCCATGTGCCTTGTTGAAAATGCTTTCCTCTGTGAGGCTGGCTTTGAATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTGCCTTGTTGAAAATGCTTTCCTCTGTGAGGCTGGCTTTGAATC  841

seq1  TATGACTTGCTGTTTGTTTGGGTTGGGTTAATCTGTCTCTCTTTCTGTTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTGCTGTTTGTTTGGGTTGGGTTAATCTGTCTCTCTTTCTGTTG  891

seq1  CATGTTCTTAGGAGGTCATCATCTCCCTCCAGTGACTTTCTTGGCCCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTAGGAGGTCATCATCTCCCTCCAGTGACTTTCTTGGCCCCAA  941

seq1  TTCTTTCTCTTTTGATA  960
      |||||||||||||||||
seq2  TTCTTTCTCTTTTGATA  958

seq1: chr15_73726715_73727941
seq2: B6Ng01-170O10.g_68_1295

seq1  GAATTCAGTACAGTGGAAAAGGGTGGTGTGGCTGATGGGCCACTGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACAGTGGAAAAGGGTGGTGTGGCTGATGGGCCACTGTGAAG  50

seq1  TCAAGGGCTTCAAGCCACAAAGTACTGCCAGCAGTAGACTTGGAGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGCTTCAAGCCACAAAGTACTGCCAGCAGTAGACTTGGAGCCTAT  100

seq1  CTATTGCAGGACAAGACCCTGGAGGCATTAAGGACCAATCAGTGAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCAGGACAAGACCCTGGAGGCATTAAGGACCAATCAGTGAGATGC  150

seq1  CCTGCCCTGTGGAACTCACATCCTGAATGTGTGTGCATTTGTTACCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCTGTGGAACTCACATCCTGAATGTGTGTGCATTTGTTACCTTTC  200

seq1  TACTATTGGGACGATACATCACAACGAAGGCAGATTATAGAAGAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGGGACGATACATCACAACGAAGGCAGATTATAGAAGAAAGAGC  250

seq1  TCATTTAAGCTTTTACGTCGGGCGGTGGTGGCATATACCTTTAATCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGCTTTTACGTCGGGCGGTGGTGGCATATACCTTTAATCCCAG  300

seq1  CTTTTAGCTCCAACCTGATAGAGAATCAGCAGACATGCAGGAAAGCACGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCTCCAACCTGATAGAGAATCAGCAGACATGCAGGAAAGCACGG  350

seq1  TGGGTAGAGTAGCAAGCTGAGATCTCACATCTTGACCACAGGCATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGTAGCAAGCTGAGATCTCACATCTTGACCACAGGCATGAAAA  400

seq1  CAGAGAAGGAATTAGAAGAAGAAGGGAAAGGCCTTAGACTCTCAAAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGGAATTAGAAGAAGAAGGGAAAGGCCTTAGACTCTCAAAGCTC  450

seq1  ACCCTCAGTGACATACTTCCCCCAGCAGGACATCATCCTTCTAAGCGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGTGACATACTTCCCCCAGCAGGACATCATCCTTCTAAGCGTCC  500

seq1  CCAAATAGCACCATCAACTGGAGACCAAGTGTTCAAATGTTCAAGATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGCACCATCAACTGGAGACCAAGTGTTCAAATGTTCAAGATTAT  550

seq1  GGGGATATCTTATTCAAATCCACCACAGTGCATGACCGTATACAACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATATCTTATTCAAATCCACCACAGTGCATGACCGTATACAACACAT  600

seq1  TTCTTAAGTATGGCCTTCTAGAAAAGCCAGAGGTGGGAGAGACAGAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTATGGCCTTCTAGAAAAGCCAGAGGTGGGAGAGACAGAAAGT  650

seq1  GGATGACGTGGAGAATGCAGAACTGGGGATCA-GGGCAAAATTCAGGAGG  699
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGATGACGTGGAGAATGCAGAACTGGGGATCAGGGGCAAAATTCAGGAGG  700

seq1  GGTCCAAAGGGAGATTTGGGCAGAAATAAGAACGAGATGCAAGAGGGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAGGGAGATTTGGGCAGAAATAAGAACGAGATGCAAGAGGGGAC  750

seq1  CATATGGGGACTTGGGGTATCTCAAGTGGCCTGGGCATGTAGAGTAGGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGGACTTGGGGTATCTCAAGTGGCCTGGGCATGTAGAGTAGGCC  800

seq1  TGGTTCACA-GGGCCTCAGGCTGCAGAGTAGAGTTACCACAGTCTCTCTG  848
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACAGGGGCCTCAGGCTGCAGAGTAGAGTTACCACAGTCTCTCTG  850

seq1  CTTCCTTTAAGAGGCAGTTCTACACAGTTCTCTAGAGACCAGGGGATCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTAAGAGGCAGTTCTACACAGTTCTCTAGAGACCAGGGGATCCT  900

seq1  AGGCCTGATTCTAATATCAGCCCTTATACAGACTCATGTC-TCAGTTTCT  947
      ||||||||||||||||||||| |||||||||||||||||| ||||||| |
seq2  AGGCCTGATTCTAATATCAGCTCTTATACAGACTCATGTCTTCAGTTT-T  949

seq1  CCACTTAAGCCCAGGGGCCAGGTGCTTAGGACTACAATCATGGTGGGGCT  997
       ||||||||| ||||||||  |||||||||||||||||||||||||||||
seq2  TCACTTAAGCTCAGGGGCCCAGTGCTTAGGACTACAATCATGGTGGGGCT  999

seq1  CCT--GTGGTTGTCTAAGCCTG-TGGGCAATCCCTCAGGG-ACACCAGCT  1043
       ||  ||||||||||||| ||| |||||||| |||||||| |||||||||
seq2  TCTTGGTGGTTGTCTAAGTCTGTTGGGCAATTCCTCAGGGAACACCAGCT  1049

seq1  CTCTCCCCTGGCTCCAATGATCTAG-ATTCATCATTCCTCCACTCTCTGC  1092
      |||| ||||||||||||||||  || | |  ||| |||||||| ||||||
seq2  CTCT-CCCTGGCTCCAATGATTCAGAAATACTCAATCCTCCAC-CTCTGC  1097

seq1  TG-ACATTTAATCCATGCAGGGCTGGCAGA--GGCTTTATTTTTGGAGCT  1139
      || ||||| ||| |||||||||||||||||  | |||||||||||   ||
seq2  TGAACATTAAATTCATGCAGGGCTGGCAGAAGGCCTTTATTTTTGAGACT  1147

seq1  GCCTTTGATTGGAGGGGGGCA-TTGCTCACAGGGTCTCCTGGGAGAGGAT  1188
      | |||||  |||||||||||| |||||| || || |||||||| |||   
seq2  G-CTTTGTATGGAGGGGGGCATTTGCTC-CATGG-CTCCTGGGTGAG---  1191

seq1  TTAAGAGTAAATGTCATTGTTTTTTGAGAAGGCC---TGGGG  1227
         ||   | | |||||   | ||||||||||||   |||||
seq2  ---AGTAGACACGTCAT--GTCTTTGAGAAGGCCGAGTGGGG  1228