BAC Information

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BAC

Clone NameB6Ng01-171G18
Chromosome15 (Build37)
Map Location 102,443,174 - 102,443,943
singlet/doubletsinglet
Overlap geneAtf7
Upstream geneEG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff
Downstream geneLOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171G18.b
ACCGA000313
length1,016
definitionB6Ng01-171G18.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccgacagcctaggctggcaggccaaaccctgtctcaaaaaaga
aaaaagtcttggtggccctggccctgagaacttgaattcagacaggactt
gcctcaaactggggttaaaaggagctccaggatcgctcctccagcgcccg
ccttccaaacccaccactgattcagggaagggcgactggctctgttttgc
tctgctctgctttatttggggaggatttggggtggtgggaaggtttttca
ttgaactcatgattctcttggctccaccttcatttaggattatcatcaaa
tccatcacacctggctctgcattttcttactggtttccaggaattcttct
acctcaagagcactttgagagaactagtatagttcaacaataagtatttc
ctgagtatgattaaaaccttggatttgctctttagcactgaaaaaaattt
ttaaaactagggattggaaagatggcttggtggtttagagcattggttgt
tcttctggcagacctgggttcaattatcagtactgacatgatggcttaca
accatctataactccagttccaggggatctgatgccctcttctggcttct
ctgggcacatgcatgtacatagtgcacaagtgtacatgcaagcaaaatac
ctatacacattttctttttaaaaatcacaccacatttttaaaaaacacca
aaatatacattgaaatataaagtatgttaatgttctttactccctccctt
tttgtagacagagtcttaacttgtaactctggggtagcccaacttgctat
gtagacaaggctggccttgaactcaaagaggtctgcttttttctgccttc
cagtgctggaattaaagatgggtgctaccacttggcagcttatttttact
tctgcctcttgctggccattttatgtattaataggaattattactatttt
ttgagacggagtcttacttattgtagtcttggcttggtccaaaacttgca
atgtgatcaggtatgt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102443174_102443943
seq2: B6Ng01-171G18.b_275_1048 (reverse)

seq1  ACATACCTGGTCTACATTGCAAGTTCTGGACC-AGCAAGGACTACA--TA  47
      ||||||||| || |||||||||||| |||||| ||| | |||||||   |
seq2  ACATACCTGATC-ACATTGCAAGTTTTGGACCAAGCCAAGACTACAATAA  49

seq1  GTAAGACTCTGTCTC-AAAAATAGTAATAATACTAATTAATAACATAAAA  96
      ||||||||| ||||| ||||||||||||||| |  |||||| ||||||||
seq2  GTAAGACTCCGTCTCAAAAAATAGTAATAATTCCTATTAAT-ACATAAAA  98

seq1  T-GACAGCAAGAAGCAGAAGTAAAAAATAAGCTG-CAAGTGGTAGCACAC  144
      | | |||||||| |||||||| |||||||||||| ||||||||||||| |
seq2  TGGCCAGCAAGAGGCAGAAGT-AAAAATAAGCTGCCAAGTGGTAGCACCC  147

seq1  ATCTTTAATTCCAGCACTTGGAAGGCAGAAAAAAGCAGACCTCTTTGAGT  194
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTTTAATTCCAGCAC-TGGAAGGCAGAAAAAAGCAGACCTCTTTGAGT  196

seq1  TCAAGGCCAGCCTTGTCTACATAGCAAGTTGGGCTA-CCCAGAGTTACAA  243
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAAGGCCAGCCTTGTCTACATAGCAAGTTGGGCTACCCCAGAGTTACAA  246

seq1  GTTAAGACTCTGTCTAACAAAAAGGGAGGGAGTAAAGAACATTAACATAC  293
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTAAGACTCTGTCT-ACAAAAAGGGAGGGAGTAAAGAACATTAACATAC  295

seq1  TTTATATTTCAATGTATATTTTGGTGTTTTTTAAAAATGTGGTGTGATTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTCAATGTATATTTTGGTGTTTTTTAAAAATGTGGTGTGATTT  345

seq1  TTAAAA--GAAATGTGTATAGGTATTTTGCTTGCATGTACACTTGTGCAC  391
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAATGTGTATAGGTATTTTGCTTGCATGTACACTTGTGCAC  395

seq1  TATGTACATGCATGTGCCCAGAGAAGCCAGAAGAGGGCATCAGATCCCCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATGCATGTGCCCAGAGAAGCCAGAAGAGGGCATCAGATCCCCT  445

seq1  GGAACTGGAGTTATAGATGGTTGTAAGCCATCATGTCAGTACTGATAATT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGAGTTATAGATGGTTGTAAGCCATCATGTCAGTACTGATAATT  495

seq1  GAACCCAGGTCTGCCAGAAGAACAACCAATGCTCTAAACCACCAAGCCAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGGTCTGCCAGAAGAACAACCAATGCTCTAAACCACCAAGCCAT  545

seq1  CTTTCCAATCCCTAGTTTTAAAAATTTTTTTCAGTGCTAAAGAGCAAATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATCCCTAGTTTTAAAAATTTTTTTCAGTGCTAAAGAGCAAATC  595

seq1  CAAGGTTTTAATCATACTCAGGAAATACTTATTGTTGAACTATACTAGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTTAATCATACTCAGGAAATACTTATTGTTGAACTATACTAGTT  645

seq1  CTCTCAAAGTGCTCTTGAGGTAGAAGAATTCCTGGAAACCAGTAAGAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAAGTGCTCTTGAGGTAGAAGAATTCCTGGAAACCAGTAAGAAAA  695

seq1  TGCAGAGCCAGGTGTGATGGATTTGATGATAATCCTAAATGAAGGTGGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGCCAGGTGTGATGGATTTGATGATAATCCTAAATGAAGGTGGAG  745

seq1  CCAAGAGAATCATGAGTTCAATGAAAAAC  770
      |||||||||||||||||||||||||||||
seq2  CCAAGAGAATCATGAGTTCAATGAAAAAC  774