BAC Information

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BAC

Clone NameB6Ng01-172D03
Chromosome15 (Build37)
Map Location 28,478,540 - 28,614,554
singlet/doubletdoublet
Overlap geneLOC100040675, LOC100040689
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126, Dnahc5, EG382974
Downstream geneLOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172D03.bB6Ng01-172D03.g
ACCGA000878GA000879
length9881,047
definitionB6Ng01-172D03.b B6Ng01-172D03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,478,540 - 28,479,535)(28,613,506 - 28,614,554)
sequence
gaattcaacagactggaataagtgtaaaaattcatgggttcatagtcaca
aatagatattaaaattcacagcattgtagtgatagaccccttctctgaaa
atctctcatttgtcacaagttgaagttgttaaggcactattgccccaaga
gctggtaaataagagaaaaaggaagcattccacagcttccccttcaagga
aaacatttgatggctaccaactggttgatgaaagaaagagcttgggttgg
catgtgaaaagaaataattctactcaaatatctttgttggagtgatgcat
taaaaaatacagaagtacgaagaaagttaattcagagaagagaaaaccgc
cagaagggaaccagttaagagcccaatcctgttgttctgtcgaaaagaat
atatgacagatgttttagatgtccttttcttctatggtatcttttactcc
tgcagcagttgctgatcagcacaccatgccccatcccatagctgtgcctg
ccttccaggagacctgctcaaacctgaggcacacaattccatcttcctcc
tgggaggcctgctcaaacccaggacacccaggctagccaacaccagaaag
agccagatggtaaaggcaagtgcaagaacataatgaacagaatcaatgca
atatagcagcatcagaacccagctctcctactagagcaagccctggatat
cctaacacacctgaatagcaagactgtgactataagtcccatgtcatgaa
gctgatagaggactttaaataggatataaataattctcttaaagatatac
aggaaagcacagcaagacaggcagaaacccttaaagaggaaacaagcaaa
tcccttacagaaatataggaaaatacagtgaaacaggtgaaggaaatgaa
caaaacagtccaagacctaaaaatggaaatagaagcattaggaaaataca
aatggagcacactcagatgaaaacctagaagagaacag

gaattctattactttttaaaataataaagacatatatgtaaatataagtg
ggaaatgatttatgaatttgccaaaagcatgtttttattctaccagtttg
ctcaatgagaactaacatccaaaaatttttttatttaatctaaatatctt
agcagtttttctcttagtcttaatatttcactaggctctgcccttttcat
atttaagtatatagagagatacatacctaatgttattgtaaggaaatact
tttaaaataattattacagaattaccatatgagtattaatagtatattaa
aatttactgggtaacttcaaaaatttaaagatagaatttaatattttaaa
aaagaaaagacatgaaaacttactattatactcaataatcaccaaaatta
ttattcaagaatagtagaataagtaagacctaatattatattttccatat
ttggacatatctataagcatttatttgaatatataactatatttataatg
tatatatgttgctatattagtatttaggactttctcacccagacatttat
tgatgccagtaataatatattttctatttatttgagatctgtagcattca
gtaaagtatctgaaatgtacctgtttatgtaggaattgttggtgttcatg
ctgtatttatgggctatgttacctacataaatgtaacagattgaatttac
aagtctcttaatgtaaaaatgtcagaggcttaaaatatctactcctgtcc
aataggaaagaattctattactttttaaaataataaagacatatatgtaa
atataagtgggaaatgatttatgaatttgccaaaagcatgtttttattct
accagtttgctcaatgagaactaacatccaaaaatttgtgtattttgccc
tctatagaaaatccagaatagtgtctgagtgaacagagaagcagaagcca
tgtatcaaaacccttcataggactgtgagctgtagaccaggatgtgatag
tataaaggccagggccaagaagtcggagttggtgggggaggggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28478540_28479535
seq2: B6Ng01-172D03.b_45_1032

seq1  GAATTCAACAGACTGGAATAAGTGTAAAAATTCATGGGTTCATAGTCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGACTGGAATAAGTGTAAAAATTCATGGGTTCATAGTCACA  50

seq1  AATAGATATTAAAATTCACAGCATTGTAGTGATAGACCCCTTCTCTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATATTAAAATTCACAGCATTGTAGTGATAGACCCCTTCTCTGAAA  100

seq1  ATCTCTCATTTGTCACAAGTTGAAGTTGTTAAGGCACTATTGCCCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCATTTGTCACAAGTTGAAGTTGTTAAGGCACTATTGCCCCAAGA  150

seq1  GCTGGTAAATAAGAGAAAAAGGAAGCATTCCACAGCTTCCCCTTCAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAATAAGAGAAAAAGGAAGCATTCCACAGCTTCCCCTTCAAGGA  200

seq1  AAACATTTGATGGCTACCAACTGGTTGATGAAAGAAAGAGCTTGGGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGATGGCTACCAACTGGTTGATGAAAGAAAGAGCTTGGGTTGG  250

seq1  CATGTGAAAAGAAATAATTCTACTCAAATATCTTTGTTGGAGTGATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAAAGAAATAATTCTACTCAAATATCTTTGTTGGAGTGATGCAT  300

seq1  TAAAAAATACAGAAGTACGAAGAAAGTTAATTCAGAGAAGAGAAAACCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATACAGAAGTACGAAGAAAGTTAATTCAGAGAAGAGAAAACCGC  350

seq1  CAGAAGGGAACCAGTTAAGAGCCCAATCCTGTTGTTCTGTCGAAAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGGAACCAGTTAAGAGCCCAATCCTGTTGTTCTGTCGAAAAGAAT  400

seq1  ATATGACAGATGTTTTAGATGTCCTTTTCTTCTATGGTATCTTTTACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAGATGTTTTAGATGTCCTTTTCTTCTATGGTATCTTTTACTCC  450

seq1  TGCAGCAGTTGCTGATCAGCACACCATGCCCCATCCCATAGCTGTGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGTTGCTGATCAGCACACCATGCCCCATCCCATAGCTGTGCCTG  500

seq1  CCTTCCAGGAGACCTGCTCAAACCTGAGGCACACAATTCCATCTTCCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGAGACCTGCTCAAACCTGAGGCACACAATTCCATCTTCCTCC  550

seq1  TGGGAGGCCTGCTCAAACCCAGGACACCCAGGCTAGCCAACACCAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCCTGCTCAAACCCAGGACACCCAGGCTAGCCAACACCAGAAAG  600

seq1  AGCCAGATGGTAAAGGCAAGTGCAAGAACATAATGAACAGAATCAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGATGGTAAAGGCAAGTGCAAGAACATAATGAACAGAATCAATGCA  650

seq1  ATATAGCAGCATCAGAACCCAGCTCTCCTACTAGAGCAAGCCCTGGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAGCATCAGAACCCAGCTCTCCTACTAGAGCAAGCCCTGGATAT  700

seq1  CCTAACACACCTGAATAGCAAGACTGTGACTATAAGTCCCATGTCATGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACACACCTGAATAGCAAGACTGTGACTATAAGTCCCATGTCATGAA  750

seq1  GCTGATAGAGGACTTTAAATAGGATATAAATAATTCTCTTAAAGATATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATAGAGGACTTTAAATAGGATATAAATAATTCTCTTAAAGATATAC  800

seq1  AGGAAAGCACAGCAAGACAGGCAGAAACCCTTAAAGAGGAAACAAGCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCACAGCAAGACAGGCAGAAACCCTTAAAGAGGAAACAAGCAAA  850

seq1  TCCCTTACAGAAATATAGGAAAATACAGTGAAACAGGTGAAGGAAATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTACAGAAATATAGGAAAATACAGTGAAACAGGTGAAGGAAATGAA  900

seq1  CAAAACAGTCCAAGACCTAAAAATGGAAATAGAAGCAATAAGGAAAATAC  950
      |||||||||||||||||||||||||||||||||||| || ||||||||||
seq2  CAAAACAGTCCAAGACCTAAAAATGGAAATAGAAGC-ATTAGGAAAATAC  949

seq1  AAATGGAGGCAACACTCAAGATGGAAAAACCTAGGAAAGAGAACAG  996
      ||||||||   |||||| |||||  |||||||||  ||||||||||
seq2  AAATGGAG--CACACTC-AGATG--AAAACCTAG--AAGAGAACAG  988


seq1: chr15_28613506_28614554
seq2: B6Ng01-172D03.g_65_1111 (reverse)

seq1  CAATCCCCT-CCCCACCAACTCCGACTTCTTGGCCCTGGCCTTTATAACT  49
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CAATCCCCTCCCCCACCAACTCCGACTTCTTGGCCCTGGCCTTTAT-ACT  49

seq1  ATTCACATCCTGGTCTACAGCTCACAGTCCTTATGAAGGGTTTTGATACA  99
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  A-TCACATCCTGGTCTACAGCTCACAGTCC-TATGAAGGGTTTTGATACA  97

seq1  TGGCTTCTGCTTCTCTGTTCACTCAGACACTATTCTGGATTTTCTTTAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGCTTCTGCTTCTCTGTTCACTCAGACACTATTCTGGATTTTCTATAGA  147

seq1  GGGCAAAATACACAAATTTTTGGATGTTAGTTCTCATTGAGCAAACTGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAAATACACAAATTTTTGGATGTTAGTTCTCATTGAGCAAACTGGT  197

seq1  AGAATAAAAACATGCTTTTGGCAAATTCATAAATCATTTCCCACTTATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAACATGCTTTTGGCAAATTCATAAATCATTTCCCACTTATAT  247

seq1  TTACATATATGTCTTTATTATTTTAAAAAGTAATAGAATTCTTTCCTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATATGTCTTTATTATTTTAAAAAGTAATAGAATTCTTTCCTATT  297

seq1  GGACAGGAGTAGATATTTTAAGCCTCTGACATTTTTACATTAAGAGACTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGAGTAGATATTTTAAGCCTCTGACATTTTTACATTAAGAGACTT  347

seq1  GTAAATTCAATCTGTTACATTTATGTAGGTAACATAGCCCATAAATACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTCAATCTGTTACATTTATGTAGGTAACATAGCCCATAAATACAG  397

seq1  CATGAACACCAACAATTCCTACATAAACAGGTACATTTCAGATACTTTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACACCAACAATTCCTACATAAACAGGTACATTTCAGATACTTTAC  447

seq1  TGAATGCTACAGATCTCAAATAAATAGAAAATATATTATTACTGGCATCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTACAGATCTCAAATAAATAGAAAATATATTATTACTGGCATCA  497

seq1  ATAAATGTCTGGGTGAGAAAGTCCTAAATACTAATATAGCAACATATATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTCTGGGTGAGAAAGTCCTAAATACTAATATAGCAACATATATA  547

seq1  CATTATAAATATAGTTATATATTCAAATAAATGCTTATAGATATGTCCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAATATAGTTATATATTCAAATAAATGCTTATAGATATGTCCAA  597

seq1  ATATGGAAAATATAATATTAGGTCTTACTTATTCTACTATTCTTGAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAAAATATAATATTAGGTCTTACTTATTCTACTATTCTTGAATAA  647

seq1  TAATTTTGGTGATTATTGAGTATAATAGTAAGTTTTCATGTCTTTTCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGTGATTATTGAGTATAATAGTAAGTTTTCATGTCTTTTCTTT  697

seq1  TTTAAAATATTAAATTCTATCTTTAAATTTTTGAAGTTACCCAGTAAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATTAAATTCTATCTTTAAATTTTTGAAGTTACCCAGTAAATT  747

seq1  TTAATATACTATTAATACTCATATGGTAATTCTGTAATAATTATTTTAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATACTATTAATACTCATATGGTAATTCTGTAATAATTATTTTAAA  797

seq1  AGTATTTCCTTACAATAACATTAGGTATGTATCTCTCTATATACTTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCTTACAATAACATTAGGTATGTATCTCTCTATATACTTAAAT  847

seq1  ATGAAAAGGGCAGAGCCTAGTGAAATATTAAGACTAAGAGAAAAACTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGGGCAGAGCCTAGTGAAATATTAAGACTAAGAGAAAAACTGCT  897

seq1  AAGATATTTAGATTAAATAAAAAAATTTTTGGATGTTAGTTCTCATTGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTAGATTAAATAAAAAAATTTTTGGATGTTAGTTCTCATTGAG  947

seq1  CAAACTGGTAGAATAAAAACATGCTTTTGGCAAATTCATAAATCATTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGTAGAATAAAAACATGCTTTTGGCAAATTCATAAATCATTTCC  997

seq1  CACTTATATTTACATATATGTCTTTATTATTTTAAAAAGTAATAGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATATTTACATATATGTCTTTATTATTTTAAAAAGTAATAGAATTC  1047


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