BAC Information

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BAC

Clone NameB6Ng01-172K01
Chromosome15 (Build37)
Map Location 87,112,467 - 87,258,744
singlet/doubletdoublet
Overlap genenone
Upstream geneTbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172K01.bB6Ng01-172K01.g
ACCGA001193GA001194
length2451,135
definitionB6Ng01-172K01.b B6Ng01-172K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,112,467 - 87,112,711)(87,257,628 - 87,258,744)
sequence
tcaccacatgaatagataccatcatctttccaatttaatgtatctctgtc
caactagtattccttgataacttcaataggagaccaccgctttcaaaacc
gtggcagaatctccattcaaagaagaagacactcactgatagactaggtg
ggtgggtggggagggtgacccttgccccagtcaccttctttcacctctgt
tgttcatgagtgaaggtcaattatttgtgacttccccatcatgta

gaattcagtggatcatccttacatcccctgaggctgatgggagcttatga
ctgaagctcctcacaccatgcgagacaggaactagagaagaagggaccag
gggtctgacataaagctcttagaaccaactaaaaatgatgctagcagtgt
ggaccaggcccttaagatgagagccatttggggatacttcctgctctaag
tgccgctgatctcttcaggatccttccatcctaaagtcatggggttgact
ggtaccactgggctctgtgtcagggacatggttaaagccacaatgagtca
acatgctaactctcatatatttcaaaatattcatgagcacagtccctctt
cttcctcatagctgttatatttttcttgtgtttagttttttttttctcct
ttgcttgtgtgtatcttgaagcagatttctttttcatgtcctaggaaaca
catcttcaatgatttattgatcactcatttttaatgattctaattaatta
atttgtatgtttagaccttaatttactagatacaattctttaagtgcttg
tcctgtgcaggtgcccatactctttttgggatgacaatcccaaataaagc
agggataggttctcagtggtcattcaggcttcagggcagaccggtggcca
cactaggctacatggtatactctagcaaggtctatagatggcatcacttg
atgtcaattaaggcagtcagaaccctgggttaagaaagcaggctctagag
acaccaagtatataagtttttgaaggttcgtgggtctgcagagatactag
ccccataagaccagcaaaaggtacaaattgcacacatgtgaagggcccat
gaaactctgaggagacagagcagagggtcagagtgggtagactgccaaaa
aagacatctagcatggaattgtggcacatggttgaccacacctcctgctg
tctctattctggtgacctgaggcagaacaaagcacttctctctcctttct
attgctccctccttcctgtctcctctccgtcaatctgtctcctccctccc
tcttccctagtatcccacttttccgttcctcccgtcacctttttccctct
ccctttactcattccttcgctctctccattctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_87112467_87112711
seq2: B6Ng01-172K01.b_45_289

seq1  TCACCACATGAATAGATACCATCATCTTTCCAATTTAATGTATCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACATGAATAGATACCATCATCTTTCCAATTTAATGTATCTCTGTC  50

seq1  CAACTAGTATTCCTTGATAACTTCAATAGGAGACCACCGCTTTCAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGTATTCCTTGATAACTTCAATAGGAGACCACCGCTTTCAAAACC  100

seq1  GTGGCAGAATCTCCATTCAAAGAAGAAGACACTCACTGATAGACTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAATCTCCATTCAAAGAAGAAGACACTCACTGATAGACTAGGTG  150

seq1  GGTGGGTGGGGAGGGTGACCCTAGCCCCAGTCACCTTCTTTCACATCTGT  200
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GGTGGGTGGGGAGGGTGACCCTTGCCCCAGTCACCTTCTTTCACCTCTGT  200

seq1  TGTTCATGAGTGAAGGTCAATTAGTTGTTCCTTCCCCATCATGTA  245
      ||||||||||||||||||||||| ||||  |||||||||||||||
seq2  TGTTCATGAGTGAAGGTCAATTATTTGTGACTTCCCCATCATGTA  245


seq1: chr15_87257628_87258744
seq2: B6Ng01-172K01.g_65_1199 (reverse)

seq1  GAGAGAAAGAGGAGAG---AGAAAAGAGTGAAGGG-GAGGGAAA------  40
      ||||||| |  |||||   || || |||| ||||| ||||||||      
seq2  GAGAGAATGGAGAGAGCGAAGGAATGAGTAAAGGGAGAGGGAAAAAGGTG  50

seq1  ------------GAAAAGTGGGATACTAGGGAAGGAGGGAGGGA-GAGAC  77
                  ||||||||||||||||||||| |||||||||| |||||
seq2  ACGGGAGGAACGGAAAAGTGGGATACTAGGGAA-GAGGGAGGGAGGAGAC  99

seq1  AGATTGACGGAGA-GAGACAAGGAAGGAGGGAAGCCAATAGAAAGGAGAG  126
      ||||||||||||| ||||| ||||||||||||   |||||||||||||||
seq2  AGATTGACGGAGAGGAGAC-AGGAAGGAGGGA--GCAATAGAAAGGAGAG  146

seq1  AGAAGTGCTTTGTTCCTGCCTCAGGGTCACCAGGAATAGAGGACAGCAGG  176
      |||||||||||||| |||||||| |||||||| ||||||| |||||||||
seq2  AGAAGTGCTTTGTT-CTGCCTCA-GGTCACCA-GAATAGA-GACAGCAGG  192

seq1  AGGTGTGGTC-ACCATGTGCCACAATTCCATGCTAGATGTC-TTTTTGGC  224
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AGGTGTGGTCAACCATGTGCCACAATTCCATGCTAGATGTCTTTTTTGGC  242

seq1  AGTCTACCCACTCTGACCCTCTGCTCTGTCTCCTCAGAGTTTCATGGGCC  274
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACCCACTCTGACCCTCTGCTCTGTCTCCTCAGAGTTTCATGGGCC  292

seq1  CTTCACATGTGTGCAATTTGTACCTTTTGCTGGTCTTATGGGGCTAGTAT  324
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATGTGTGCAATTTGTACCTTTTGCTGGTCTTATGGGGCTAGTAT  342

seq1  CTCTGCAGACCCACGAACCTTCAAAAACTTATATACTTGGTGTCTCTAGA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGACCCACGAACCTTCAAAAACTTATATACTTGGTGTCTCTAGA  392

seq1  GCCTGCTTTCTTAACCCAGGGTTCTGACTGCCTTAATTGACATCAAGTGA  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTTTCTTAACCCAGGGTTCTGACTGCCTTAATTGACATCAAGTGA  442

seq1  TGCCATCTATAGACCTTGCTAGAGTATACCATGTAGCCTAGTGTGGCCAC  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCTATAGACCTTGCTAGAGTATACCATGTAGCCTAGTGTGGCCAC  492

seq1  CGGTCTGCCCTGAAGCCTGAATGACCACTGAGAACCTATCCCTGCTTTAT  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTGCCCTGAAGCCTGAATGACCACTGAGAACCTATCCCTGCTTTAT  542

seq1  TTGGGATTGTCATCCCAAAAAGAGTATGGGCACCTGCACAGGACAAGCAC  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTGTCATCCCAAAAAGAGTATGGGCACCTGCACAGGACAAGCAC  592

seq1  TTAAAGAATTGTATCTAGTAAATTAAGGTCTAAACATACAAATTAATTAA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAATTGTATCTAGTAAATTAAGGTCTAAACATACAAATTAATTAA  642

seq1  TTAGAATCATTAAAAATGAGTGATCAATAAATCATTGAAGATGTGTTTCC  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCATTAAAAATGAGTGATCAATAAATCATTGAAGATGTGTTTCC  692

seq1  TAGGACATGAAAAAGAAATCTGCTTCAAGATACACACAAGCAAAGGAGAA  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACATGAAAAAGAAATCTGCTTCAAGATACACACAAGCAAAGGAGAA  742

seq1  AAAAAAAACTAAACACAAGAAAAATATAACAGCTATGAGGAAGAAGAGGG  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTAAACACAAGAAAAATATAACAGCTATGAGGAAGAAGAGGG  792

seq1  ACTGTGCTCATGAATATTTTGAAATATATGAGAGTTAGCATGTTGACTCA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTCATGAATATTTTGAAATATATGAGAGTTAGCATGTTGACTCA  842

seq1  TTGTGGCTTTAACCATGTCCCTGACACAGAGCCCAGTGGTACCAGTCAAC  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTTAACCATGTCCCTGACACAGAGCCCAGTGGTACCAGTCAAC  892

seq1  CCCATGACTTTAGGATGGAAGGATCCTGAAGAGATCAGCGGCACTTAGAG  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGACTTTAGGATGGAAGGATCCTGAAGAGATCAGCGGCACTTAGAG  942

seq1  CAGGAAGTATCCCCAAATGGCTCTCATCTTAAGGGCCTGGTCCACACTGC  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTATCCCCAAATGGCTCTCATCTTAAGGGCCTGGTCCACACTGC  992

seq1  TAGCATCATTTTTAGTTGGTTCTAAGAGCTTTATGTCAGACCCCTGGTCC  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCATTTTTAGTTGGTTCTAAGAGCTTTATGTCAGACCCCTGGTCC  1042

seq1  CTTCTTCTCTAGTTCCTGTCTCGCATGGTGTGAGGAGCTTCAGTCATAAG  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTCTAGTTCCTGTCTCGCATGGTGTGAGGAGCTTCAGTCATAAG  1092

seq1  CTCCCATCAGCCTCAGGGGATGTAAGGATGATCCACTGAATTC  1117
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCAGCCTCAGGGGATGTAAGGATGATCCACTGAATTC  1135


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