BAC Information

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BAC

Clone NameB6Ng01-174G15
Chromosome15 (Build37)1 (Build37)
Map Location 31,054,039 - 31,055,181144,619,909 - 144,620,321
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCtnnd2, 9630009A06Rik
Downstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174G15.bB6Ng01-174G15.g
ACCGA002502GA002503
length1,142778
definitionB6Ng01-174G15.b B6Ng01-174G15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,054,039 - 31,055,181)(144,619,909 - 144,620,321)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaagaa
aaaaaaaaaaaaaaaaaccatagttttggctctcacagaagtttgttctc
aaaaaggcaaggaggcaaagagagatatggaaaggtttccaatatcccct
tcaagaccatgctgctagtgacctaacttctttcaactagctcccagcca
gctgtgtaaggtcccaatagcaccaggagcaggctggagaaaccaggact
gatcacacgagcctttggtttcctctttctcctagctctagtcaaggcaa
gctaatcttccaaggtcctgacctgcagctttgacctcatgggttcatta
agtgaaaattctcctgatctctatctgatgagattcctctcctcctttcc
ccacatcttctcacttggtctgcttcagcagcaatccttctggatccatc
taacaagatttccttagctttaatgttttctttcagtaattttatctcta
ctcacccctgtcctggtccttaactggaaaaaaaatcttccattggtttt
tgtatttagagatgagccctgtttaatctctgctactataacccccaccc
ctgtcatgtggggttatatccgagtgctaggattaaaggtgtgcgccacc
acgcccggctcaaaactatgttttaatcactgtggggttatatacatgtg
gggttatatccgagtgctaggattaaaggtgtgcgccaccacgcccggct
caaaactatgttttaatcactgtgcctaagagatccatgaaacaaaaatg
cctgtaaactgtaagcccaaagacagaaaacacctgaaatgctggaggct
attctttacgagaggtaaaagccatagtttcactccctctaagcaagttt
gtatgacccaacctccagatgtgttgataacacaagtggggtggggaggt
acaccagggcagaagtatgtcagaatgtatgctttgtctctgattggaat
gtaagcagagaatatctggcaggcagtaaatcggggtatttgctagctcc
tgatgctctgatggggaaatatggtggcccttgtgtttgactttacgccc
ttcaaaatatgacttgagacatttcttggaaaccctagaatg
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcaccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttgggcctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gctgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ctctgcgactctcgcccgtcctagaaacggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcatgccgggcagacccccgtgc
tctcaccaggaaggtggtcggctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_31054039_31055181
seq2: B6Ng01-174G15.b_48_1189

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAGAA  50

seq1  AAAAAAAAAAAAAAAAACCATAGTTTTGGCTCTCACAGAAGTTTGTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAACCATAGTTTTGGCTCTCACAGAAGTTTGTTCTC  100

seq1  AAAAAGGCAAGGAGGCAAAGAGAGATATGGAAAGGTTTCCAATATCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCAAGGAGGCAAAGAGAGATATGGAAAGGTTTCCAATATCCCCT  150

seq1  TCAAGACCATGCTGCTAGTGACCTAACTTCTTTCAACTAGCTCCCAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACCATGCTGCTAGTGACCTAACTTCTTTCAACTAGCTCCCAGCCA  200

seq1  GCTGTGTAAGGTCCCAATAGCACCAGGAGCAGGCTGGAGAAACCAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAAGGTCCCAATAGCACCAGGAGCAGGCTGGAGAAACCAGGACT  250

seq1  GATCACACGAGCCTTTGGTTTCCTCTTTCTCCTAGCTCTAGTCAAGGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACGAGCCTTTGGTTTCCTCTTTCTCCTAGCTCTAGTCAAGGCAA  300

seq1  GCTAATCTTCCAAGGTCCTGACCTGCAGCTTTGACCTCATGGGTTCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCTTCCAAGGTCCTGACCTGCAGCTTTGACCTCATGGGTTCATTA  350

seq1  AGTGAAAATTCTCCTGATCTCTATCTGATGAGATTCCTCTCCTCCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATTCTCCTGATCTCTATCTGATGAGATTCCTCTCCTCCTTTCC  400

seq1  CCACATCTTCTCACTTGGTCTGCTTCAGCAGCAATCCTTCTGGATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCTTCTCACTTGGTCTGCTTCAGCAGCAATCCTTCTGGATCCATC  450

seq1  TAACAAGATTTCCTTAGCTTTAATGTTTTCTTTCAGTAATTTTATCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATTTCCTTAGCTTTAATGTTTTCTTTCAGTAATTTTATCTCTA  500

seq1  CTCACCCCTGTCCTGGTCCTTAACTGGAAAAAAAATCTTCCATTGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCCTGTCCTGGTCCTTAACTGGAAAAAAAATCTTCCATTGGTTTT  550

seq1  TGTATTTAGAGATGAGCCCTGTTTAATCTCTGCTACTATAACCCCCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGAGATGAGCCCTGTTTAATCTCTGCTACTATAACCCCCACCC  600

seq1  CTGTCATGTGGGGTTATATCCGAGTGCTAGGATTAAAGGTGTGCGCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTGGGGTTATATCCGAGTGCTAGGATTAAAGGTGTGCGCCACC  650

seq1  ACGCCCGGCTCAAAACTATGTTTTAATCACTGTGGGGTTATATACATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGGCTCAAAACTATGTTTTAATCACTGTGGGGTTATATACATGTG  700

seq1  GGGTTATATCCGAGTGCTAGGATTAAAGGTGTGCGCCACCACGCCCGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATATCCGAGTGCTAGGATTAAAGGTGTGCGCCACCACGCCCGGCT  750

seq1  CAAAACTATGTTTTAATCACTGTGCCTAAGAGATCCATGAAACAAAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTATGTTTTAATCACTGTGCCTAAGAGATCCATGAAACAAAAATG  800

seq1  CCTGTAAACTGTAAGCCCAAAGACAGAAAACACCTGAAATGCTGGAGGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAAACTGTAAGCCCAAAGACAGAAAACACCTGAAATGCTGGAGGCT  850

seq1  ATTCTTTACGAGAGGTAAAAGCCATAGTTTCACTCCCTCTAAGCAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTACGAGAGGTAAAAGCCATAGTTTCACTCCCTCTAAGCAAGTTT  900

seq1  GTATGACCCAA-CTCCAGATGTGTTGATAACACAAGTGGG--TGGGAGGT  947
      ||||||||||| ||||||||||||||||||||||||||||   |||||||
seq2  GTATGACCCAACCTCCAGATGTGTTGATAACACAAGTGGGGTGGGGAGGT  950

seq1  ACA-CAGGCAGGAAGTATGTCAGAATGTATGC-TTGTCTCTGATTGG-AT  994
      ||| ||||   ||||||||||||||||||||| |||||||||||||| ||
seq2  ACACCAGGGCAGAAGTATGTCAGAATGTATGCTTTGTCTCTGATTGGAAT  1000

seq1  GTAAGCAGGAGATATACTGGCAGGCAGTAAATCGGGGTATTTGCTAGCTC  1044
      ||||||||   |||| ||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGAGAATAT-CTGGCAGGCAGTAAATCGGGGTATTTGCTAGCTC  1049

seq1  CTGATTGCTCCTGAT-GGGAAATATGGTGG-CCTTGTGGTTTTGACTTTT  1092
      |||| |||| ||||| |||||||||||||| |||||||  ||||||  ||
seq2  CTGA-TGCT-CTGATGGGGAAATATGGTGGCCCTTGTG--TTTGAC--TT  1093

seq1  TACGCCCTTTCAAAATATGACTTGTGGCCATTTCCTGGGAAACCTAGAAT  1142
      ||||||| ||||||||||||||||  | |||||| ||| || ||||||||
seq2  TACGCCC-TTCAAAATATGACTTG-AGACATTTCTTGGAAACCCTAGAAT  1141

seq1  G  1143
      |
seq2  G  1142

seq1: chr1_144619909_144620321
seq2: B6Ng01-174G15.g_317_844 (reverse)

seq1  AGACAGCCGGCCACCTTCCTGGTGAGAGCACGGGGGTCTGCC--------  42
      ||||||||| ||||||||||||||||||||||||||||||||        
seq2  AGACAGCCGACCACCTTCCTGGTGAGAGCACGGGGGTCTGCCCGGCATGA  50

seq1  -------------------------------------------GGACTCC  49
                                                 |||||||
seq2  GAGGTTTGTGGCACAGGCGCCGGCGGGAGCCTTCTTGGCTCCGGGACTCC  100

seq1  GCGGAGGGCAGGCTGCACGGGAGACTGTGTGGAATACAGAG-GCCAGCCG  98
      ||||||||||||||||||||| ||| ||||||||||||||| ||||||||
seq2  GCGGAGGGCAGGCTGCACGGGTGACCGTGTGGAATACAGAGTGCCAGCCG  150

seq1  TTTCTGGGACGGGCGAGAGTCGCAGAGCTTCTGGGGCGGCGCCATCTTCA  148
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCTAGGACGGGCGAGAGTCGCAGAGCTTCT-GGGCGGCGCCATCTTCA  199

seq1  TCTCCAGACAACCTGCCACCTTCCTGGCGAGAGCCACAGAGCTTCTG---  195
       |||||||||||| ||||||||||  || ||||||||||||||||||   
seq2  GCTCCAGACAACCAGCCACCTTCCCAGCAAGAGCCACAGAGCTTCTGAGG  249

seq1  --------------------------------------------------  195
                                                        
seq2  CAGCGCCATCCTCAGCTCCAGACGGCCGGCCTCCTTCCGGACAAGAGCCA  299

seq1  -----------AGGTGGCGACATCTTCGACTCCAGAAAACCGGCCACCTT  234
                 ||| ||||||||||||||||||||| ||| |||||||||
seq2  CAGAGCTTCTCAGGCGGCGACATCTTCGACTCCAGACAACTGGCCACCTT  349

seq1  CCTGGCCAAAGCAACACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCA  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCAAAGCAACACAGCTTCTGGGAAAGATCCTGTTTTGGGCCTTCA  399

seq1  CCTTCAGCCAGGAGGAGGTCCAAACACCAGATAACTGTACACCTTCCCCA  334
      |||||||||||||||||| |||||||||||||||||||||||||||||  
seq2  CCTTCAGCCAGGAGGAGGCCCAAACACCAGATAACTGTACACCTTCCCTG  449

seq1  AAAGAGGAGAGCTTGCCTGCAGAGACTGCTCTAACCACTGAAACTCAGAG  384
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AAAGAGGAGAGCTTGCCTACAGAGACTGCTCTGACCACTGAAACTCAGAG  499

seq1  GAGAGAGCTTGTCTCCCACGCCTGCTGAT  413
       ||||||||||||||||||||||||||||
seq2  AAGAGAGCTTGTCTCCCACGCCTGCTGAT  528