BAC Information

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BAC

Clone NameB6Ng01-174P08
Chromosome15 (Build37)
Map Location 100,946,031 - 101,107,363
singlet/doubletdoublet
Overlap geneAnkrd33, Acvrl1, Acvr1b, Grasp, Nr4a1
Upstream geneDip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225
Downstream gene9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174P08.bB6Ng01-174P08.g
ACCGA002893GA002894
length430371
definitionB6Ng01-174P08.b B6Ng01-174P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,106,927 - 101,107,363)(100,946,031 - 100,946,407)
sequence
ttttgcctgtcccgaggtacaaggaaagcaagaaggtagtagtctggaca
ttagctacaaccattctgctcccagactgtgtcagtcatcaaagagatgg
ggaaactgggtctgggtgaagcactggcttctctaacagggaagggaagt
gggccgggtgctagagttgctgggaaagctcacttggaatgaggtattgt
cccaagatgcattcttggaccatgctaggcagggtctgcccgagcccata
gacctttcttaggactgaggctgaaatgcactcccagatctcaaatgagg
atgcacagctgggaatccttagggaatctttcatgctgagttagagccta
gaagcgcttatgtcgtcttcctgactgtagagcagagccccttttggccc
actctgatccagctcctctcatccagaggc
actcagctctgagcctggagaagctgccaccatccaagtctagcaggatc
ttagggcaaggattgagcaatggcagagagtacagtcaccccccagcccc
ccaatcccttcctaacccgcttgacctggctcagctctgaggtgtttatg
gcagctttctgcaggcacagccatctgtcacctgccttgtttcttggtat
cagctaccccacagaagggctagtgagcttttgaggtgtgggggtggact
gagccacaggctggccctctgctgtgatggagaccctagagtcccaggta
aggttgggggatgggaaatgataacccctgtcatgagcttccttgataac
ctgacctacatacagtaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_101106927_101107363
seq2: B6Ng01-174P08.b_46_481 (reverse)

seq1  GCCTCTGGATGAGAGGAGCTGGATCAGAGTGGGCCAAAAGGGGCTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGATGAGAGGAGCTGGATCAGAGTGGGCCAAAAGGGGCTCTGCT  50

seq1  CTACAGTCAGGAAGACGACATAAGCGCTTCTAGGCTCTAACTCAGCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCAGGAAGACGACATAAGCGCTTCTAGGCTCTAACTCAGCATGA  100

seq1  AAGATTCCCTAAGGATTCCCAGCTGTGCATCCTCATTTGAGATCTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCCCTAAGGATTCCCAGCTGTGCATCCTCATTTGAGATCTGGGAG  150

seq1  TGCATTTCAGCCTCAGTCCTAAGAAAGGTCTATGGGCTCGGGCAGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCAGCCTCAGTCCTAAGAAAGGTCTATGGGCTCGGGCAGACCCT  200

seq1  GCCTAGCATGGTCCAAGAATGCATCTTGGGACAATACCTCATTCCAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCATGGTCCAAGAATGCATCTTGGGACAATACCTCATTCCAAGTG  250

seq1  AGCTTTCCCAGCAACTCTAGCACCCGGCCCACTTCCCTTCCCTGTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCCAGCAACTCTAGCACCCGGCCCACTTCCCTTCCCTGTTAGAG  300

seq1  AAGCCCAGTGCTTCACCCAGACCCAGTTTCCCCATCTCTTTGATGACTGA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-CCAGTGCTTCACCCAGACCCAGTTTCCCCATCTCTTTGATGACTGA  349

seq1  CACAGTCTGGGAGCAGAATGGTTGTAGCTAATGTCCAGACTAGTTCCCTC  400
      |||||||||||||||||||||||||||||||||||||||||| | || ||
seq2  CACAGTCTGGGAGCAGAATGGTTGTAGCTAATGTCCAGACTACTACCTTC  399

seq1  TTGCTTTCCTTGTACCTCGGGACAGGCAAAAGAATTC  437
      |||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCCTTGTACCTCGGGACAGGCAAAAGAATTC  436

seq1: chr15_100946031_100946407
seq2: B6Ng01-174P08.g_69_445

seq1  GAATTCACTCAGCTCTGAGCCTGGAGAAGCTGCCACCATCCAAGTCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGCTCTGAGCCTGGAGAAGCTGCCACCATCCAAGTCTAGC  50

seq1  AGGATCTTAGGGCAAGGATTGAGCAATGGCAGAGAGTACAGTCACCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTAGGGCAAGGATTGAGCAATGGCAGAGAGTACAGTCACCCCCC  100

seq1  AGCCCCCCAATCCCTTCCTAACCCGCTTGACCTGGCTCAGCTCTGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCCAATCCCTTCCTAACCCGCTTGACCTGGCTCAGCTCTGAGGTG  150

seq1  TTTATGGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGCAGCTTTCTGCAGGCACAGCCATCTGTCACCTGCCTTGTTTCT  200

seq1  TGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAGCTACCCCACAGAAGGGCTAGTGAGCTTTTGAGGTGTGGGGG  250

seq1  TGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGAGCCACAGGCTGGCCCTCTGCTGTGATGGAGACCCTAGAGTCC  300

seq1  CAGGTAAGGTTGGGGGATGGGAAATGATAACCCCTGTCATGAGCTTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGGTTGGGGGATGGGAAATGATAACCCCTGTCATGAGCTTCCTT  350

seq1  GAGAACCTGACCTACATACAGTAAGAT  377
      || ||||||||||||||||||||||||
seq2  GATAACCTGACCTACATACAGTAAGAT  377