BAC Information

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BAC

Clone NameB6Ng01-176F11
Chromosome15 (Build37)
Map Location 71,393,223 - 71,533,490
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9, 1810044A24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176F11.bB6Ng01-176F11.g
ACCGA003899GA003900
length1,0071,066
definitionB6Ng01-176F11.b B6Ng01-176F11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,393,223 - 71,393,886)(71,532,423 - 71,533,490)
sequence
gaattccaccttccagccacaccaatatcctatataaatgcatcaacaac
atttgggctttttgtttgtttgtttttgagatgttcatgcatggataatg
tgtttgcatcacttatcccccctccaactcttcccatgcccctcagctcc
ttcacaattattttacacacacacacacacacacacacacacacacacac
acacacacaatctgtgcactacaggacaaaaagcattttctcaacatgtt
ttcttgaagccattgaacacctgcagacaaaaaaataattacaaacaaac
ctcaaattaaacctcccacctcacataaaatctgtctccaagctggtctt
tcacataaacgaaaaatataaacctatgaagacaacatctacacaactaa
ttttaacatggcaaagtctagctggtacctatctagagcttctttcccct
agtactgatcttgggattggaaagtatactgtatactaccagaggagaaa
tgaacacaccaacccagctacaaactcttctctctacaatgatatactac
ctgcaagatactctagtgcaatggtggtacaaagcctgtagaagcaacca
accaataatatctgatctgatataagacctagtccctgagatggtacccc
tataagacactgcatgagtgagcaagaacatgagattagatagcctaggg
acaaagggggaaacatatagtattgctatacaaagagaatggggcaataa
aatgaatcctaatggcattctgttatgctcataagtaccttgctcaacca
tcattagagaagcctcctcctgcagcagatggaaacaaacacagagagcc
acagcaagacaatattcatagagtgatagattttgaaacactttggccct
aaatggatgtcttcatcaaaccttaccttcactactcaggaaatctaaag
aagaagaagcaggagacaaacattgtaagggccataagactgaagatacc
agggaaa
gaattcctgtggtgacttatgttgattttgagctctggattttgggctct
tttgttaaatgggattccatctcactccatacttttttcataaggctgta
atgagttatgttctaaaaatcttggtcataaatgggtatgtataaggaac
ttgggtgtccatttaaagtgctttctgcaaaattcaatttgaatttgaaa
atcaggagagattacatgctaaaactgagaacatgcttacattacttaca
aaaaaaaatttcctgtatgtgtgttgtctgtataatctcacagtattgct
cagatccttggcagaatttatatcatagacagtgagtttgccccttgggg
tccactgcctgactctctcaataagagcctgatatccctgcagattttgc
agtctggccttttcagtcaggtttgcaatcagctctaaggaacagtagac
ttcactgactgtagcttttgactgttcactaaataattcagacctggagt
tgccagagactaggaaagtgcaggacttgcttttgttcgttgtttcatgc
ttatctaaagaaactgatctctgtcttatcaactatggctgttccttgtc
atccatgggtttgtagctcttgactggtggtttaatgaccaatgctacga
cattatcaagctaaggaaatgctgagaggagaatggctgtcttccttttt
ctagtttctgcagtcagaaccctccctgcacaaaaggaggaactgagaat
gaatagcccctggatcaggcagtagcagcctacagcagcatctgccattc
ctagattaatatcttccaggtttgaactgccttcaaaacggctgccttga
ctgtttttctcctctccaaagggtggcatgggccattttcagtcaaggtt
ggttgtttgaggtctgggagaaaggtgagctttctgattccagtgtacag
cttagcaacagggttccttctactgtctcatggagctaacccatgaatct
tctatctgcctctctatctaagatgagcaagtatttcacttgcaggcatg
gattctcaacaatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_71393223_71393886
seq2: B6Ng01-176F11.b_47_710

seq1  GAATTCCACCTTCCAGCCACACCAATATCCTATATAAATGCATCAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTTCCAGCCACACCAATATCCTATATAAATGCATCAACAAC  50

seq1  ATTTGGGCTTTTTGTTTGTTTGTTTTTGAGATGTTCATGCATGGATAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCTTTTTGTTTGTTTGTTTTTGAGATGTTCATGCATGGATAATG  100

seq1  TGTTTGCATCACTTATCCCCCCTCCAACTCTTCCCATGCCCCTCAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCATCACTTATCCCCCCTCCAACTCTTCCCATGCCCCTCAGCTCC  150

seq1  TTCACAATTATTTTACACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATTATTTTACACACACACACACACACACACACACACACACACAC  200

seq1  ACACACACAATCTGTGCACTACAGGACAAAAAGCATTTTCTCAACATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAATCTGTGCACTACAGGACAAAAAGCATTTTCTCAACATGTT  250

seq1  TTCTTGAAGCCATTGAACACCTGCAGACAAAAAAATAATTACAAACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAGCCATTGAACACCTGCAGACAAAAAAATAATTACAAACAAAC  300

seq1  CTCAAATTAAACCTCCCACCTCACATAAAATCTGTCTCCAAGCTGGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTAAACCTCCCACCTCACATAAAATCTGTCTCCAAGCTGGTCTT  350

seq1  TCACATAAACGAAAAATATAAACCTATGAAGACAACATCTACACAACTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAAACGAAAAATATAAACCTATGAAGACAACATCTACACAACTAA  400

seq1  TTTTAACATGGCAAAGTCTAGCTGGTACCTATCTAGAGCTTCTTTCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATGGCAAAGTCTAGCTGGTACCTATCTAGAGCTTCTTTCCCCT  450

seq1  AGTACTGATCTTGGGATTGGAAAGTATACTGTATACTACCAGAGGAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGATCTTGGGATTGGAAAGTATACTGTATACTACCAGAGGAGAAA  500

seq1  TGAACACACCAACCCAGCTACAAACTCTTCTCTCTACAATGATATACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACACCAACCCAGCTACAAACTCTTCTCTCTACAATGATATACTAC  550

seq1  CTGCAAGATACTCTAGTGCAATGGTGGTACAAAGCCTGTAGAAGCAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGATACTCTAGTGCAATGGTGGTACAAAGCCTGTAGAAGCAACCA  600

seq1  ACCAATAATATCTGATCTGATATAAGACCTAGTCCCTGAGATGGTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAATATCTGATCTGATATAAGACCTAGTCCCTGAGATGGTACCCC  650

seq1  TATAAGACACTGCA  664
      ||||||||||||||
seq2  TATAAGACACTGCA  664

seq1: chr15_71532423_71533490
seq2: B6Ng01-176F11.g_66_1131 (reverse)

seq1  AGGA-TGTTGAG-ATTCATGCCTGCAGGTG-AATACTTTGCTCATCTTAG  47
      |||| ||||||| || |||||||||| ||| ||||| |||||||||||||
seq2  AGGATTGTTGAGAATCCATGCCTGCAAGTGAAATAC-TTGCTCATCTTAG  49

seq1  ATAGAGGAGGCAGGAATAGAAGATTTCATGGGTTAGCTCCATTGGAGACA  97
      ||||| |||||||  |||||||| ||||||||||||||||||  ||||||
seq2  ATAGA-GAGGCAG--ATAGAAGA-TTCATGGGTTAGCTCCAT--GAGACA  93

seq1  G-AGAAGGAACCCTG-TGCTAAGCTGTAACACTTGAATCAGGAAGCTCAC  145
      | ||||||||||||| ||||||||||| ||||| ||||||| ||||||||
seq2  GTAGAAGGAACCCTGTTGCTAAGCTGT-ACACTGGAATCAGAAAGCTCAC  142

seq1  CTTTCTCCCAGACCTCAAAC-ACCAACCTTGACTGAAAATGGCCCATGCC  194
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTTCTCCCAGACCTCAAACAACCAACCTTGACTGAAAATGGCCCATGCC  192

seq1  ACCCTTTGGAGAGGAGAAAAACAGTCAAGGCAGCCGTTTTGAAGGCAGTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGGAGAGGAGAAAAACAGTCAAGGCAGCCGTTTTGAAGGCAGTT  242

seq1  CAAACCTGGAAGATATTAATCTAGGAATGGCAGATGCTGCTGTAGGCTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTGGAAGATATTAATCTAGGAATGGCAGATGCTGCTGTAGGCTGC  292

seq1  TACTGCCTGATCCAGGGGCTATTCATTCTCAGTTCCTCCTTTTGTGCAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTGATCCAGGGGCTATTCATTCTCAGTTCCTCCTTTTGTGCAGG  342

seq1  GAGGGTTCTGACTGCAGAAACTAGAAAAAGGAAGACAGCCATTCTCCTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCTGACTGCAGAAACTAGAAAAAGGAAGACAGCCATTCTCCTCT  392

seq1  CAGCATTTCCTTAGCTTGATAATGTCGTAGCATTGGTCATTAAACCACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTTCCTTAGCTTGATAATGTCGTAGCATTGGTCATTAAACCACCA  442

seq1  GTCAAGAGCTACAAACCCATGGATGACAAGGAACAGCCATAGTTGATAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGCTACAAACCCATGGATGACAAGGAACAGCCATAGTTGATAAG  492

seq1  ACAGAGATCAGTTTCTTTAGATAAGCATGAAACAACGAACAAAAGCAAGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCAGTTTCTTTAGATAAGCATGAAACAACGAACAAAAGCAAGT  542

seq1  CCTGCACTTTCCTAGTCTCTGGCAACTCCAGGTCTGAATTATTTAGTGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTTTCCTAGTCTCTGGCAACTCCAGGTCTGAATTATTTAGTGAA  592

seq1  CAGTCAAAAGCTACAGTCAGTGAAGTCTACTGTTCCTTAGAGCTGATTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAAGCTACAGTCAGTGAAGTCTACTGTTCCTTAGAGCTGATTGC  642

seq1  AAACCTGACTGAAAAGGCCAGACTGCAAAATCTGCAGGGATATCAGGCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGACTGAAAAGGCCAGACTGCAAAATCTGCAGGGATATCAGGCTC  692

seq1  TTATTGAGAGAGTCAGGCAGTGGACCCCAAGGGGCAAACTCACTGTCTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGAGAGTCAGGCAGTGGACCCCAAGGGGCAAACTCACTGTCTAT  742

seq1  GATATAAATTCTGCCAAGGATCTGAGCAATACTGTGAGATTATACAGACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAATTCTGCCAAGGATCTGAGCAATACTGTGAGATTATACAGACA  792

seq1  ACACACATACAGGAAATTTTTTTTTGTAAGTAATGTAAGCATGTTCTCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACAGGAAATTTTTTTTTGTAAGTAATGTAAGCATGTTCTCAG  842

seq1  TTTTAGCATGTAATCTCTCCTGATTTTCAAATTCAAATTGAATTTTGCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCATGTAATCTCTCCTGATTTTCAAATTCAAATTGAATTTTGCAG  892

seq1  AAAGCACTTTAAATGGACACCCAAGTTCCTTATACATACCCATTTATGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTTTAAATGGACACCCAAGTTCCTTATACATACCCATTTATGAC  942

seq1  CAAGATTTTTAGAACATAACTCATTACAGCCTTATGAAAAAAGTATGGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTTAGAACATAACTCATTACAGCCTTATGAAAAAAGTATGGAG  992

seq1  TGAGATGGAATCCCATTTAACAAAAGAGCCCAAAATCCAGAGCTCAAAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGAATCCCATTTAACAAAAGAGCCCAAAATCCAGAGCTCAAAAT  1042

seq1  CAACATAAGTCACCACAGGAATTC  1068
      ||||||||||||||||||||||||
seq2  CAACATAAGTCACCACAGGAATTC  1066