BAC Information

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BAC

Clone NameB6Ng01-176L05
Chromosome15 (Build37)
Map Location 100,266,047 - 100,412,765
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176L05.bB6Ng01-176L05.g
ACCGA004171GA004172
length832740
definitionB6Ng01-176L05.b B6Ng01-176L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,266,047 - 100,266,601)(100,412,027 - 100,412,765)
sequence
gaattccaggacagccagggctgcacagagaaaccctgtgtcttagttag
agtttctattgctgtgacaaaatatcatgatcaaaaaagcaagctgggaa
gccgggcgtggtggcacacgcctttaatcccagtaatcaggaggcagagg
caggcagatctctgtgagttttgagaggccagcctggtctacaaagagag
ttccaggacattgagggctacacagagaagcccctcccctccaaaaaaaa
aagaagaagaagaaagaaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaggaaagaaagaagcaagttggagctgataca
gaggctgtggagggtgctgcttcctgtcttgctcagctggctttgttcta
gaacccaggaccacctgcccagggacggcaccacctacaaatcgctaggg
cctcccccatcaatcactaattgaaaaatgccttacagatggatctcatg
gaggcatttcctcaactaaggctccttcctctttgattttaacctgggtc
cacttgaaagaaagaaagaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaa
ggaaggaaaggaaggaaggaaggaaagaaggaagaaaaggatggaaggaa
agaggcatgcatgcagatgctaagatagggtgggcatacattcacacctg
ctttcctacttggaagcaacaggatgtatgta
gaattccaggacagccaaggctacacagagataagggttatagaagttcc
tactaaagtagcagatgtctgtaatctcagcctgggctacatagggagtt
caattccagcctgggttatgggatcctgtcagaaaacagcaacaaaaccc
ctaatttagaagtgtatgaatgttacaccatggagctgacacgtgggtat
acagttagtgtgtgatggtagttagttctgtgctgtcttaggggagctgc
tggggtctccatggctggtaggtgtgtgtatcttgggaagccctgacgtg
gtggaatcaaggactcgtgtctggttaagtcgtcagcttaagttttccct
tttttttcctctgccatctggggtctcagacatgtatagggtaccatcgc
tgtgctattccttcagctttggaagttctagagaaagaccaaggccaatg
gtctggggaccaaggcgggggggggggcaggtctgagagccagcaggagg
cagaatccagggaagagaaaaatccagggaaactcggggagggcagaggg
tgaggacgatgaggagggcagagcctttcggggagagcaaggaactcggg
gagggcgtttgagacagggtttctctgggtagctctggctgtcctgggac
ttgctgtgtgtggagcaagctggcctaaaactcgtaaaaatctgactgcc
tctgccttctgagtgctgggatttaatgtgtggttatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100266047_100266601
seq2: B6Ng01-176L05.b_322_877

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGAAAGAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGA  100

seq1  AAGAAGCAAGTTGGAGCTGATACAGAGGCTGTGGAGGGTGCTGCTTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAGTTGGAGCTGATACAGAGGCTGTGGAGGGTGCTGCTTCCTG  150

seq1  TCTTGCTCAGCTGGCTTTGTTCTAGAACCCAGGACCACCTGCCCAGGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTCAGCTGGCTTTGTTCTAGAACCCAGGACCACCTGCCCAGGGAC  200

seq1  GGCACCACCTACAAATCGCTAGGGCCTCCCCCATCAATCACTAATTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCACCTACAAATCGCTAGGGCCTCCCCCATCAATCACTAATTGAAA  250

seq1  AATGCCTTACAGATGGATCTCATGGAGGCATTTCCTCAACTAAGGCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTACAGATGGATCTCATGGAGGCATTTCCTCAACTAAGGCTCCT  300

seq1  TCCTCTTTGATTTTAACCTGGGTCCACTTGAAAGAAAGAAAGAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTGATTTTAACCTGGGTCCACTTGAAAGAAAGAAAGAAGAAAGA  350

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  400

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGG-AAGGAAGGAAGGAAGGAAG  449
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAAGGAAGGAAGGAAA  450

seq1  GAAGGAAGAAAAGGAAGGAAGGAAAGAGGCAGGCAGGCAGATGCTAAGAC  499
      ||||||||||||||| ||||||||||||||| ||| ||||||||||||| 
seq2  GAAGGAAGAAAAGGATGGAAGGAAAGAGGCATGCATGCAGATGCTAAGAT  500

seq1  AGGGTGGGCATACATTCACACCTGCTTTCCTACTTGGAAGCAACAGGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGCATACATTCACACCTGCTTTCCTACTTGGAAGCAACAGGATG  550

seq1  TATGTA  555
      ||||||
seq2  TATGTA  556

seq1: chr15_100412027_100412765
seq2: B6Ng01-176L05.g_65_804 (reverse)

seq1  GTGAT-ACCACACATTTAATCCCAGCACTCAGAAGGCAGAGGCAGTCAGA  49
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGATAACCACACATTAAATCCCAGCACTCAGAAGGCAGAGGCAGTCAGA  50

seq1  TTTCTACGAGTTCTAGGCCAGCCTGCTCCACACACAGCAAGTCCCAGGAC  99
      ||| |||||||| ||||||||| |||||||||||||||||||||||||||
seq2  TTTTTACGAGTTTTAGGCCAGCTTGCTCCACACACAGCAAGTCCCAGGAC  100

seq1  AGCCAGAGCTACCCAGAGAAACCCTGTCTCAAACGCCCTCCCCGAGTTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGCTACCCAGAGAAACCCTGTCTCAAACGCCCTCCCCGAGTTCC  150

seq1  TTGCTCTCCCCGAAAGGCTCTGCCCTCCTCATCGTCCTCACCCTCTGCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTCCCCGAAAGGCTCTGCCCTCCTCATCGTCCTCACCCTCTGCCC  200

seq1  TCCCCGAGTTTCCCTGGATTTTTCTCTTCCCTGGATTCTGCCTCCTGCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGAGTTTCCCTGGATTTTTCTCTTCCCTGGATTCTGCCTCCTGCTG  250

seq1  GCTCTCAGACCTGCCCCCCCCCCCGCCTTGGTCCCCAGACCATTGGCCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGACCTGCCCCCCCCCCCGCCTTGGTCCCCAGACCATTGGCCTT  300

seq1  GGTCTTTCTCTAGAACTTCCAAAGCTGAAGGAATAGCACAGCGATGGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCTCTAGAACTTCCAAAGCTGAAGGAATAGCACAGCGATGGTAC  350

seq1  CCTATACATGTCTGAGACCCCAGATGGCAGAGGAAAAAAAAGGGAAAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACATGTCTGAGACCCCAGATGGCAGAGGAAAAAAAAGGGAAAACT  400

seq1  TAAGCTGACGACTTAACCAGACACGAGTCCTTGATTCCACCACGTCAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGACGACTTAACCAGACACGAGTCCTTGATTCCACCACGTCAGGG  450

seq1  CTTCCCAAGATACACACACCTACCAGCCATGGAGACCCCAGCAGCTCCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGATACACACACCTACCAGCCATGGAGACCCCAGCAGCTCCCC  500

seq1  TAAGACAGCACAGAACTAACTACCATCACACACTAACTGTATACCCACGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGCACAGAACTAACTACCATCACACACTAACTGTATACCCACGT  550

seq1  GTCAGCTCCATGGTGTAACATTCATACACTTCTAAATTAGGGGTTTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTCCATGGTGTAACATTCATACACTTCTAAATTAGGGGTTTTGTT  600

seq1  GCTGTTTTCTGACAGGATCCCATAACCCAGGCTGGAATTGAACTCCCTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCTGACAGGATCCCATAACCCAGGCTGGAATTGAACTCCCTAT  650

seq1  GTAGCCCAGGCTGAGATTACAGACATCTGCTACTTTAGTAGGAACTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGGCTGAGATTACAGACATCTGCTACTTTAGTAGGAACTTCTA  700

seq1  TAACCCTTATCTCTGTGTAGCCTTGGCTGTCCTGGAATTC  739
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTTATCTCTGTGTAGCCTTGGCTGTCCTGGAATTC  740