BAC Information

Click to search

BAC

Clone NameB6Ng01-177B17
Chromosome15 (Build37)
Map Location 22,830,587 - 22,907,573
singlet/doubletdoublet
Overlap geneCdh18
Upstream geneEG545091
Downstream geneLOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177B17.bB6Ng01-177B17.g
ACCGA004469GA004470
length1,1281,097
definitionB6Ng01-177B17.b B6Ng01-177B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,830,587 - 22,831,724)(22,906,483 - 22,907,573)
sequence
gaattcattttttttttctgaaattcatagtcagatagtcaatccccctc
tgtcctttttctccctgttcctttccttctttccttcctgtctctcatct
tttgcccaagcttaggcaaccaaagtcttctgatctatacgcaatgtaat
gaaagaagacctaagaattgtccatgttacataaccttacactctataga
tttttttcagacattggaattgaaatattactgtttaggcttttctcaag
agtctacttatggtctgatgaaccttgggtaggtgttgttaaatatgatt
actggtcctttttcagactagagaagatcaagtctaattgaatacttaat
gaattgggaagatatatcccaaattgttcattatattttcatttaacaca
gtaatctgggaacaaagttctgatgtattaagtaaatctctcaagtagcc
ccaacatctatttttccaagatgtaatatcccttattttttcttgaagtg
catcattaatataagatcaattattaatatgcttaataatacattttctg
attatatcattcctttcctactggtatattgttcttaaaatatagtaaaa
tgataagctgaaactaagttattcttgaagacaaagattttggtttgtgt
tgcgtatggaagcatgggtaggagatgaactgttcctttatgtattttaa
cggaactgatttaccaatacgtggtgatgtgtctactgactcataccatg
ggcaccagtgagaagacccaagcactgtacaaacaaacccggtccttgca
ctctgcctttggctgattaacactgtagcattttacacatcacagacaaa
ttagctttaagcttctatggttattctctccttaatggaaattctttgta
ggttagaagtattttaactatctttacttaaaagcaattgtatcatgtct
ttgtataaaattcaaagaatatttctccatatcctttttattctaactta
gaatgtatctgtaagatgagtgaggagtgcctttgttcatttaggatgga
gactactgaaacaagatatgatatgttttagacgaaagtcagcaagcttg
tctctaaaagaccttctacagtagatga

gaattcacttgattaggcttctcgtgttgcaccctgaaaattagtgtaag
aaacataagtagctatgcatatattttcacctcccaaagggatgctaact
ttcactaagtaattatgttctcttcagtcatctatttacttatgtgctaa
tagttctaaaaatgtaccaaggagattaatttaatgaaaaataagtaaag
tgggtgttacatgacacagtaaccattttcataaagcatagttctgggga
ttattgtagtgaagatgtattatttcatttttcttggaacttcttaggat
tgggccaagaaaatactgtatctagtgttacaatttcaccacagcgcctc
agtaagttgataacatctctttttctacacaatttgacagaagataattg
taataacattaaagttatttttctctcaaaaattcaaagactcatttaag
tcaccaagccatcctattgctgttcaggaaaaaaatgccatttgtgttgt
caagtttattttctcattagaaaatgatgtgcttggggaaggctgtgaga
ctgcctgaatcctccttccacaattctcaaatgttctgtcagttcattcc
ttttccatttttctttcctttaattcatctactcattgcttcccccctac
tcctccttcgttgccccttctttattttatgaaagacattcatcagaacg
atatatcatttttttctgcattctcataactgcaaagggcagcatgagat
gaattacttatgtagacctgagggctggaatataaaccactgctcttgtg
ccatactgtgattcggaccatggtgataagccacaatctggaaatggaaa
cattactcccagatgcaccaggtcctgtcatacaagcttcagattgaaga
acccactactactcctaaaattgtttatgagtgcccagtcctgttttatt
taaaaaaaatagaaatattggagctagtgagaatcctcaaatctagggca
tgttctttatcttctgctgataagactgccatatggaatgaaagctgtgg
gtcaggacaagcctctggaataattgaagctacctctgtttactaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22830587_22831724
seq2: B6Ng01-177B17.b_37_1164

seq1  GAATTCATTTTTTTTTTCTGAAATTCATAGTCAGATAGTCAATCCCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTTTTTTCTGAAATTCATAGTCAGATAGTCAATCCCCCTC  50

seq1  TGTCCTTTTTCTCCCTGTTCCTTTCCTTCTTTCCTTCCTGTCTCTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTTCTCCCTGTTCCTTTCCTTCTTTCCTTCCTGTCTCTCATCT  100

seq1  TTTGCCCAAGCTTAGGCAACCAAAGTCTTCTGATCTATACGCAATGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAAGCTTAGGCAACCAAAGTCTTCTGATCTATACGCAATGTAAT  150

seq1  GAAAGAAGACCTAAGAATTGTCCATGTTACATAACCTTACACTCTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGACCTAAGAATTGTCCATGTTACATAACCTTACACTCTATAGA  200

seq1  TTTTTTTCAGACATTGGAATTGAAATATTACTGTTTAGGCTTTTCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCAGACATTGGAATTGAAATATTACTGTTTAGGCTTTTCTCAAG  250

seq1  AGTCTACTTATGGTCTGATGAACCTTGGGTAGGTGTTGTTAAATATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACTTATGGTCTGATGAACCTTGGGTAGGTGTTGTTAAATATGATT  300

seq1  ACTGGTCCTTTTTCAGACTAGAGAAGATCAAGTCTAATTGAATACTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCTTTTTCAGACTAGAGAAGATCAAGTCTAATTGAATACTTAAT  350

seq1  GAATTGGGAAGATATATCCCAAATTGTTCATTATATTTTCATTTAACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGAAGATATATCCCAAATTGTTCATTATATTTTCATTTAACACA  400

seq1  GTAATCTGGGAACAAAGTTCTGATGTATTAAGTAAATCTCTCAAGTAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTGGGAACAAAGTTCTGATGTATTAAGTAAATCTCTCAAGTAGCC  450

seq1  CCAACATCTATTTTTCCAAGATGTAATATCCCTTATTTTTTCTTGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATCTATTTTTCCAAGATGTAATATCCCTTATTTTTTCTTGAAGTG  500

seq1  CATCATTAATATAAGATCAATTATTAATATGCTTAATAATACATTTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAATATAAGATCAATTATTAATATGCTTAATAATACATTTTCTG  550

seq1  ATTATATCATTCCTTTCCTACTGGTATATTGTTCTTAAAATATAGTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCATTCCTTTCCTACTGGTATATTGTTCTTAAAATATAGTAAAA  600

seq1  TGATAAGCTGAAACTAAGTTATTCTTGAAGACAAAGATTTTGGTTTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGCTGAAACTAAGTTATTCTTGAAGACAAAGATTTTGGTTTGTGT  650

seq1  TGCGTATGGAAGCATGGGTAGGAGATGAACTGTTCCTTTATGTATTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTATGGAAGCATGGGTAGGAGATGAACTGTTCCTTTATGTATTTTAA  700

seq1  CGGAACTGATTTACCAATACGTGGTGATGTGTCTACTGACTCATACCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACTGATTTACCAATACGTGGTGATGTGTCTACTGACTCATACCATG  750

seq1  GGCACCAGTGAGAAGACCCAAGCACTGTACAAACAAACCCGGTCCTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCAGTGAGAAGACCCAAGCACTGTACAAACAAACCCGGTCCTTGCA  800

seq1  CTCTGCCTTTGGCTGATTAACACTGTAGCATTTTACACATCACAGACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTTGGCTGATTAACACTGTAGCATTTTACACATCACAGACAAA  850

seq1  TTAGCTTTAAGCTTCTATGGTTATTCTCTCCTTAATGGAATTCTTTTGTA  900
      |||||||||||||||||||||||||||||||||||||||| |  ||||||
seq2  TTAGCTTTAAGCTTCTATGGTTATTCTCTCCTTAATGGAAATTCTTTGTA  900

seq1  GGTTAGAAGTATTTTAACTATCTTTACTTAAAAGCAATTGTATCATGTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAAGTATTTTAACTATCTTTACTTAAAAGCAATTGTATCATGTCT  950

seq1  TTGTATAAAATTTCAAAG-ATATTTCTCCATATCCTTTTTATTCTTACTT  999
      |||||||||| ||||||| |||||||||||||||||||||||||| ||||
seq2  TTGTATAAAA-TTCAAAGAATATTTCTCCATATCCTTTTTATTCTAACTT  999

seq1  TAAGAATGTATCTGTAAGATGAGTGA-GAGTGCCTTTG-TCATTAAGAAT  1047
        |||||||||||||||||||||||| ||||||||||| ||||| || ||
seq2  --AGAATGTATCTGTAAGATGAGTGAGGAGTGCCTTTGTTCATTTAGGAT  1047

seq1  GAAGACTACTGAAACAAAGATTAATGATATGTTTTAGACCAGAGAGTCAG  1097
      | ||||||||||||| |||||  ||||||||||||||||  || ||||||
seq2  GGAGACTACTGAAAC-AAGAT--ATGATATGTTTTAGAC--GAAAGTCAG  1092

seq1  GAAAGCCTTGTCTCTAAAAGAACCTTTTCTACAGTAGATGA  1138
       ||   ||||||||||||||| |   |||||||||||||||
seq2  CAA--GCTTGTCTCTAAAAGACC---TTCTACAGTAGATGA  1128


seq1: chr15_22906483_22907573
seq2: B6Ng01-177B17.g_65_1161 (reverse)

seq1  CTTAGTAAACAGAGGTAGCTTCATATTATT-CAGA-GCTTGTCCTTCCAC  48
      ||||||||||||||||||||||| |||||| |||| |||||||||   ||
seq2  CTTAGTAAACAGAGGTAGCTTCA-ATTATTCCAGAGGCTTGTCCT--GAC  47

seq1  CCACCAGCTTTTCATCCATATGGCAGTCTTTATCAGCAGAAGATAAAG-A  97
      ||| |||||||   |||||||||||||| ||||||||||||||||||| |
seq2  CCA-CAGCTTTCATTCCATATGGCAGTC-TTATCAGCAGAAGATAAAGAA  95

seq1  CATGCCCTAGATTTGA-GATTCTCACTAGCTCC-ATATTTCTATTTTTTT  145
      |||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  CATGCCCTAGATTTGAGGATTCTCACTAGCTCCAATATTTCTATTTTTTT  145

seq1  TAAAT-AAACA-GACTGGGCACTCAT-AACAATTTTA-GAGTAGTAGTGG  191
      ||||| ||||| |||||||||||||| |||||||||| ||||||||||||
seq2  TAAATAAAACAGGACTGGGCACTCATAAACAATTTTAGGAGTAGTAGTGG  195

seq1  GTTCTTCAATCTGAAGCTTGTATGACAGGACCTGGTGCATCTTGGAGTAA  241
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTTCTTCAATCTGAAGCTTGTATGACAGGACCTGGTGCATCTGGGAGTAA  245

seq1  TGTTTCCATTTCCAGATTGTGGCTTATCACCATGGTCCGAATCACAGTAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATTTCCAGATTGTGGCTTATCACCATGGTCCGAATCACAGTAT  295

seq1  GGCACAAGAGCAGTGGTTTATATTCCAGCCCTCAGGTCTACATAAGTAAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAGAGCAGTGGTTTATATTCCAGCCCTCAGGTCTACATAAGTAAT  345

seq1  TCATCTCATGCTGCCC-TTGCAGTTATGAGAATGCAG-AAAAAATGATAT  389
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TCATCTCATGCTGCCCTTTGCAGTTATGAGAATGCAGAAAAAAATGATAT  395

seq1  ATCGTTCTGATGAATGTCTTTCATAAAATAAAGAAGGGGCAACGAAGGAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCTGATGAATGTCTTTCATAAAATAAAGAAGGGGCAACGAAGGAG  445

seq1  GAGTAGGGGGGAAGCAATGAGTAGATGAATTAAAGGAAAGAAAAATGGAA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGGGGGAAGCAATGAGTAGATGAATTAAAGGAAAGAAAAATGGAA  495

seq1  AAGGAATGAACTGACAGAACATTTGAGAATTGTGGAAGGAGGATTCAGGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGAACTGACAGAACATTTGAGAATTGTGGAAGGAGGATTCAGGC  545

seq1  AGTCTCACAGCCTTCCCCAAGCACATCATTTTCTAATGAGAAAATAAACT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCACAGCCTTCCCCAAGCACATCATTTTCTAATGAGAAAATAAACT  595

seq1  TGACAACACAAATGGCATTTTTTTCCTGAACAGCAATAGGATGGCTTGGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACAAATGGCATTTTTTTCCTGAACAGCAATAGGATGGCTTGGT  645

seq1  GACTTAAATGAGTCTTTGAATTTTTGAGAGAAAAATAACTTTAATGTTAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAATGAGTCTTTGAATTTTTGAGAGAAAAATAACTTTAATGTTAT  695

seq1  TACAATTATCTTCTGTCAAATTGTGTAGAAAAAGAGATGTTATCAACTTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTATCTTCTGTCAAATTGTGTAGAAAAAGAGATGTTATCAACTTA  745

seq1  CTGAGGCGCTGTGGTGAAATTGTAACACTAGATACAGTATTTTCTTGGCC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCGCTGTGGTGAAATTGTAACACTAGATACAGTATTTTCTTGGCC  795

seq1  CAATCCTAAGAAGTTCCAAGAAAAATGAAATAATACATCTTCACTACAAT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTAAGAAGTTCCAAGAAAAATGAAATAATACATCTTCACTACAAT  845

seq1  AATCCCCAGAACTATGCTTTATGAAAATGGTTACTGTGTCATGTAACACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCAGAACTATGCTTTATGAAAATGGTTACTGTGTCATGTAACACC  895

seq1  CACTTTACTTATTTTTCATTAAATTAATCTCCTTGGTACATTTTTAGAAC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTACTTATTTTTCATTAAATTAATCTCCTTGGTACATTTTTAGAAC  945

seq1  TATTAGCACATAAGTAAATAGATGACTGAAGAGAACATAATTACTTAGTG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCACATAAGTAAATAGATGACTGAAGAGAACATAATTACTTAGTG  995

seq1  AAAGTTAGCATCCCTTTGGGAGGTGAAAATATATGCATAGCTACTTATGT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGCATCCCTTTGGGAGGTGAAAATATATGCATAGCTACTTATGT  1045

seq1  TTCTTACACTAATTTTCAGGGTGCAACACGAGAAGCCTAATCAAGTGAAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACACTAATTTTCAGGGTGCAACACGAGAAGCCTAATCAAGTGAAT  1095

seq1  TC  1091
      ||
seq2  TC  1097


| Home | SequenceCutter | Blast | Download |