BAC Information

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BAC

Clone NameB6Ng01-177I04
Chromosome15 (Build37)
Map Location 30,636,114 - 30,769,701
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177I04.bB6Ng01-177I04.g
ACCGA004761GA004762
length759692
definitionB6Ng01-177I04.b B6Ng01-177I04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,636,114 - 30,636,870)(30,769,009 - 30,769,701)
sequence
gaattccaggaaggccagaagtaatttctagcatgtttgctaaaacattt
tgaacatgatttttctacatttattcattatttgtataaaattcaagtgg
gcctagccgtctccctcaagctgtccttccagctccccccccccaacccc
caatgcaccaggcaaatttctccaaggaaaggagaaccaagatgaggggg
atgcctctaggtcaatgcggatgggagaggaagatttggttttgtaaaag
ccaagctgtagtcatggtgaggggaaaaggaaggaagaaagatatattag
aggagggcagaagagagggataggggaagaagtggaaaaaaagggacagg
ggcagtctaaactcagtaagacaaagcaggcaggctgcattctgtgcaaa
ggttgggtgacatccaggtcccaccccttgctttagtagaagtgctaagg
acaaacactgctgcagattctaagcactaccagagagacagagtttaaga
tcatttaaagcatttttaaacggaggaaaaaatgctctggaaagagagaa
tgtcaaaagcaaaagctcacccagaaaacagtatgtgcaaagggcgtgga
gtctgagcagtgtggctggcttaaatgaatttgtggggtttggtatgtgt
gagaatgggcctgttagtgcaagggactgagtctgcagtgtgtaagagtg
gatgagagtgaagagagatgtttgatggctggatgttactggggggtgtg
ataatacaa

gaattcacaaagtataagcatccatgagaagttacataaaaaatgtaatt
ggtgactggcaaattttaatttacatgatgaaggtatgctaatttatttc
tgatagtaatctgtaataaaattgtttttatggaatgttccattaattac
atcatccataagcatccttttatcagtataaagttattactgttccaaat
ataattgacagttgatttagttcagaagaaatttaaataactaatgatgt
atactaaatatatttaagagacactttatttttatttcaggcaaaggatg
gctttttttcttgagattatcatattcatgagcagtaattggtttattaa
aatttctttaataaggtcttaattactttcacttgatcctttattttgtt
ttaatagagggtaattgtggggttttttaacctgaaagagatgactatct
ctgtgttaaaaaaaaaaaatgaagaaagcccacactttaataacagcaag
tctcagacatggccttggtttcttagggcttcagtccattctgcctttac
tttaacctatttttaattttactataagactagaggaagaattctaacaa
aattaggggtgtaaaataatgaccaaaagaagtctgggcttaatttcttt
atatgcatatgtgtgtgtatgtatgtatgtatgtatgatatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30636114_30636870
seq2: B6Ng01-177I04.b_31_789

seq1  GAATTCCAGGAAGGCCAGAAGTAATTTCTAGCATGTTTGCTAAAACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAGGCCAGAAGTAATTTCTAGCATGTTTGCTAAAACATTT  50

seq1  TGAACATGATTTTTCTACATTTATTCATTATTTGTATAAAATTCAAGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGATTTTTCTACATTTATTCATTATTTGTATAAAATTCAAGTGG  100

seq1  GCCTAGCCGTCTCCCTCAAGCTGTCCTTCCAGCTCCCCCCCCCCAACCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGCCGTCTCCCTCAAGCTGTCCTTCCAGCTCCCCCCCCCCAACCCC  150

seq1  CAATGCACCAGGCAAATTTCTCCAAGGAAAGGAGAACCAAGATGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCACCAGGCAAATTTCTCCAAGGAAAGGAGAACCAAGATGAGGGGG  200

seq1  ATGCCTCTAGGTCAATGCGGATGGGAGAGGAAGATTTGGTTTTGTAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTAGGTCAATGCGGATGGGAGAGGAAGATTTGGTTTTGTAAAAG  250

seq1  CCAAGCTGTAGTCATGGTGAGGGGAAAAGGAAGGAAGAAAGATATATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGTAGTCATGGTGAGGGGAAAAGGAAGGAAGAAAGATATATTAG  300

seq1  AGGAGGGCAGAAGAGAGGGATAGGGGAAGAAGTGGAAAAAAAGGGACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGAAGAGAGGGATAGGGGAAGAAGTGGAAAAAAAGGGACAGG  350

seq1  GGCAGTCTAAACTCAGTAAGACAAAGCAGGCAGGCTGCATTCTGTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTAAACTCAGTAAGACAAAGCAGGCAGGCTGCATTCTGTGCAAA  400

seq1  GGTTGGGTGACATCCAGGTCCCACCCCTTGCTTTAGTAGAAGTGCTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTGACATCCAGGTCCCACCCCTTGCTTTAGTAGAAGTGCTAAGG  450

seq1  ACAAACACTGCTGCAGATTCTAAGCACTACCAGAGAGACAGAGTTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACTGCTGCAGATTCTAAGCACTACCAGAGAGACAGAGTTTAAGA  500

seq1  TCATTTAAAGCATTTTTAAACGGAGGAAAAAATGCTCTGGAAAGAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAAGCATTTTTAAACGGAGGAAAAAATGCTCTGGAAAGAGAGAA  550

seq1  TGTCAAAAGCAAAAGCTCACCCAGAAAACAGTATGTGCAAAGGGCGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAGCAAAAGCTCACCCAGAAAACAGTATGTGCAAAGGGCGTGGA  600

seq1  GTCTGAGCAGTGTGGCTGGCTTAAATGAATTTGTGGGGTTTGGTATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCAGTGTGGCTGGCTTAAATGAATTTGTGGGGTTTGGTATGTGT  650

seq1  GAGAATGGGCCTGTTAGTGCAAGGGACTGAGTCTGCAGTGTGTAAGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGGGCCTGTTAGTGCAAGGGACTGAGTCTGCAGTGTGTAAGAGTG  700

seq1  GATGAGAGTGAAGAGAGATGTTTGATGGC-GGATGTTACT-GTGGGTGTG  748
      ||||||||||||||||||||||||||||| |||||||||| | |||||||
seq2  GATGAGAGTGAAGAGAGATGTTTGATGGCTGGATGTTACTGGGGGGTGTG  750

seq1  AATATACAA  757
      |  ||||||
seq2  ATAATACAA  759


seq1: chr15_30769009_30769701
seq2: B6Ng01-177I04.g_62_753 (reverse)

seq1  CATATACATACATACATACATACATACACACACATATGCATATAAAGAAA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAT-CATACATACATACATACATACACACACATATGCATATAAAGAAA  49

seq1  TTAAGCCCAGACTTCTTTTGGTCATTATTTTACACCCCTAATTTTGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCCAGACTTCTTTTGGTCATTATTTTACACCCCTAATTTTGTTAG  99

seq1  AATTCTTCCTCTAGTCTTATAGTAAAATTAAAAATAGGTTAAAGTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCTCTAGTCTTATAGTAAAATTAAAAATAGGTTAAAGTAAAGG  149

seq1  CAGAATGGACTGAAGCCCTAAGAAACCAAGGCCATGTCTGAGACTTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGACTGAAGCCCTAAGAAACCAAGGCCATGTCTGAGACTTGCTG  199

seq1  TTATTAAAGTGTGGGCTTTCTTCATTTTTTTTTTTTAACACAGAGATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGTGTGGGCTTTCTTCATTTTTTTTTTTTAACACAGAGATAGT  249

seq1  CATCTCTTTCAGGTTAAAAAACCCCACAATTACCCTCTATTAAAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTTCAGGTTAAAAAACCCCACAATTACCCTCTATTAAAACAAAA  299

seq1  TAAAGGATCAAGTGAAAGTAATTAAGACCTTATTAAAGAAATTTTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATCAAGTGAAAGTAATTAAGACCTTATTAAAGAAATTTTAATAA  349

seq1  ACCAATTACTGCTCATGAATATGATAATCTCAAGAAAAAAAGCCATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTACTGCTCATGAATATGATAATCTCAAGAAAAAAAGCCATCCTT  399

seq1  TGCCTGAAATAAAAATAAAGTGTCTCTTAAATATATTTAGTATACATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAAATAAAAATAAAGTGTCTCTTAAATATATTTAGTATACATCAT  449

seq1  TAGTTATTTAAATTTCTTCTGAACTAAATCAACTGTCAATTATATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATTTAAATTTCTTCTGAACTAAATCAACTGTCAATTATATTTGGA  499

seq1  ACAGTAATAACTTTATACTGATAAAAGGATGCTTATGGATGATGTAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATAACTTTATACTGATAAAAGGATGCTTATGGATGATGTAATTA  549

seq1  ATGGAACATTCCATAAAAACAATTTTATTACAGATTACTATCAGAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATTCCATAAAAACAATTTTATTACAGATTACTATCAGAAATAA  599

seq1  ATTAGCATACCTTCATCATGTAAATTAAAATTTGCCAGTCACCAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATACCTTCATCATGTAAATTAAAATTTGCCAGTCACCAATTACA  649

seq1  TTTTTTATGTAACTTCTCATGGATGCTTATACTTTGTGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGTAACTTCTCATGGATGCTTATACTTTGTGAATTC  692


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