BAC Information

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BAC

Clone NameB6Ng01-178H01
Chromosome15 (Build37)
Map Location 16,990,607 - 17,039,000
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178H01.bB6Ng01-178H01.g
ACCGA005428GA005429
length1,1791,129
definitionB6Ng01-178H01.b B6Ng01-178H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,990,607 - 16,991,785)(17,037,866 - 17,039,000)
sequence
gaattcaccagcattctaagatattgttggatttgtcacacacacacaca
cacacacacacacacacacacacactcacacaaaacattaaacactgacc
aagaataactggagaactgagcccatcagtttagttcaatatcttgaaaa
aaaaatgaaagttgaatttaacacaaccatacattatcaaatactaaatg
cagagctcatgatctgaggccaccaataaactttttgcaaatctgagaat
gaaacatcttcaaggttacacataggtagccctgtttctttcataaatta
gttttttgtattgttcacttttttcaaatttggaagtataactttttctt
tattttaagttatgtttaatcatttttctgcagtcctgttgttatccgtc
tcctgttctgcactccaacagttcctcatcccactcctgctccccaatct
ccaagaaatgtcccatcccgttcacacacccctacatagccccaagcctc
cccattcccttcttactgttctggatatatgtgtatttgtaaaaatattt
catctcattccatttaaaacttttaccaaaacatctataatatattatat
ttcacttacttgtgtgtatagtattaattgaatttcatgtctcctatgaa
aataggcatcagctgaatcattaactccctaaacagtattttgtgcacat
aacttacaacataattgcctttatatcttctgacaactgtcattgctata
aaggtagtttgatacagaagtagtgggattcaagagaatgccatgtaagc
ctgtagttagtgagatattttggttgttcagtggaacaacctagttgtat
aactgcaccagtctgaggtcaatacatagtgaaatggatatcagatcaat
gatacaagttgaaatacacctctcttttattaccggtggtaaaatatgag
atccaaatcaatcaggaaagaggacagtacttttggccaagtattcagga
cacttggagggcaggagagatgttttaattttttttttcaggagtgatgt
acaagttttcatccccctagcataggagtatccttttctcacatcctcag
cagcacatgctgctggtggtgttttagaatctcgcatctgaatctggtgt
taattcaagatcatttgattgccatttcc

gaattctgtatctgtctgctagatttcttttctgtttatttttatttagc
aacattttaactcattctagtttatgactatctaaaataaattagttatg
gattgcaaattttgctattcttttaaaaattgataagcatagtaaagtaa
taaaccagggtggtttttttacatgtcagttacaattatcatgagtttaa
aatatctattgtaattacacagacttactaataatttctcattatgtcat
tttctaacaaaatgtagtataaaaattccacgggattggaagtttttgat
ttcactctaagttccataatatcttctttctaatttttaatttattcttt
atccttctctaatattcattctaatatccataagccagactaatccagta
tttatttttatgctggttatgaaaatgatgaaaataatagattgctggaa
acagtgtaacttgtaagtctaccaaataagttgtattaacctataaactt
gaatggttttcttattctttactaattggagcctttctctctttgagcac
gtgatacgattctttccaatgccaataatctgtatcctctgcacagacac
gaaatggagaaacatccaacaactcggacatttccttcccacacttagaa
gcatgatatcatcaatcaaagaagctcaccataatattatcagtgtgaga
attataagaaacgttggttgtgtgatggagtgaagtaagttaagatttcc
taaacatgagatcaacagtatgcttccattgcttttagataacaatgatc
ttttcttctgcctatgtgttatgatgaactaaaaagctaatcacttcttt
acaaacttagtatatgctatgctttaaggttcatgaagatactgttatga
gtaaggatgttcgttggtactctgaaacaaaaactacacaaattatacaa
acagatgtctggtgtcatgttccagtgaaacttaaaaaaatagcaacacg
cactacagacatgtgtccaccagggacccatccttactttgtagatgata
attataaaggattatttggaatgttcagtttgataattttagctgagact
acttgcaatgagggtattgacataatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16990607_16991785
seq2: B6Ng01-178H01.b_43_1221

seq1  GAATTCACCAGCATTCTAAGATATTGTTGGATTTGTCACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGCATTCTAAGATATTGTTGGATTTGTCACACACACACACA  50

seq1  CACACACACACACACACACACACACTCACACAAAACATTAAACACTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACTCACACAAAACATTAAACACTGACC  100

seq1  AAGAATAACTGGAGAACTGAGCCCATCAGTTTAGTTCAATATCTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAACTGGAGAACTGAGCCCATCAGTTTAGTTCAATATCTTGAAAA  150

seq1  AAAAATGAAAGTTGAATTTAACACAACCATACATTATCAAATACTAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAAGTTGAATTTAACACAACCATACATTATCAAATACTAAATG  200

seq1  CAGAGCTCATGATCTGAGGCCACCAATAAACTTTTTGCAAATCTGAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCATGATCTGAGGCCACCAATAAACTTTTTGCAAATCTGAGAAT  250

seq1  GAAACATCTTCAAGGTTACACATAGGTAGCCCTGTTTCTTTCATAAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATCTTCAAGGTTACACATAGGTAGCCCTGTTTCTTTCATAAATTA  300

seq1  GTTTTTTGTATTGTTCACTTTTTTCAAATTTGGAAGTATAACTTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTATTGTTCACTTTTTTCAAATTTGGAAGTATAACTTTTTCTT  350

seq1  TATTTTAAGTTATGTTTAATCATTTTTCTGCAGTCCTGTTGTTATCCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTTATGTTTAATCATTTTTCTGCAGTCCTGTTGTTATCCGTC  400

seq1  TCCTGTTCTGCACTCCAACAGTTCCTCATCCCACTCCTGCTCCCCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTGCACTCCAACAGTTCCTCATCCCACTCCTGCTCCCCAATCT  450

seq1  CCAAGAAATGTCCCATCCCGTTCACACACCCCTACATAGCCCCAAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAATGTCCCATCCCGTTCACACACCCCTACATAGCCCCAAGCCTC  500

seq1  CCCATTCCCTTCTTACTGTTCTGGATATATGTGTATTTGTAAAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCTTCTTACTGTTCTGGATATATGTGTATTTGTAAAAATATTT  550

seq1  CATCTCATTCCATTTAAAACTTTTACCAAAACATCTATAATATATTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCATTCCATTTAAAACTTTTACCAAAACATCTATAATATATTATAT  600

seq1  TTCACTTACTTGTGTGTATAGTATTAATTGAATTTCATGTCTCCTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTACTTGTGTGTATAGTATTAATTGAATTTCATGTCTCCTATGAA  650

seq1  AATAGGCATCAGCTGAATCATTAACTCCCTAAACAGTATTTTGTGCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCATCAGCTGAATCATTAACTCCCTAAACAGTATTTTGTGCACAT  700

seq1  AACTTACAACATAATTGCCTTTATATCTTCTGACAACTGTCATTGCTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAACATAATTGCCTTTATATCTTCTGACAACTGTCATTGCTATA  750

seq1  AAGGTAGTTTGATACAGAAGTAGTGGGATTCAAGAGAATGCCATGTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTTTGATACAGAAGTAGTGGGATTCAAGAGAATGCCATGTAAGC  800

seq1  CTGTAGTTAGTGAGATATTTTGGTTGTTCAGTGGAACAACCTAGTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTAGTGAGATATTTTGGTTGTTCAGTGGAACAACCTAGTTGTAT  850

seq1  AACTGCACCAGTCTGAGGTCAATACATAGTGAAATGGATATCAGATCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCACCAGTCTGAGGTCAATACATAGTGAAATGGATATCAGATCAAT  900

seq1  GATACAAGTTGAAATACACCTCTC-TTTATTACC-GTGGTAAAATATGAG  948
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  GATACAAGTTGAAATACACCTCTCTTTTATTACCGGTGGTAAAATATGAG  950

seq1  ATCCAAATCAATCAGGAAAGA-GACAGTACTTTTGCCCAAGTATTCAAGA  997
      ||||||||||||||||||||| ||||||||||||| ||||||||||| ||
seq2  ATCCAAATCAATCAGGAAAGAGGACAGTACTTTTGGCCAAGTATTCAGGA  1000

seq1  CACTTG--AGGCA-GAGAGATGTTTTAATTTTTTTTTCCA-GAGTGGTTG  1043
      ||||||   |||| ||||||||||||||||||||||| || |||| | ||
seq2  CACTTGGAGGGCAGGAGAGATGTTTTAATTTTTTTTTTCAGGAGT-GATG  1049

seq1  TACAAGTTTTCAATCCCCCTAGCAATAGGGAGTATTCCCTTTTCTCCACA  1093
      ||||||||||| ||||||||||| ||| |||||||  |||||||| ||||
seq2  TACAAGTTTTC-ATCCCCCTAGC-ATA-GGAGTAT--CCTTTTCT-CACA  1093

seq1  TCCTCAGCAGCACATGCTGCCTTGT-GTGTTTTAGATCTTCGCCAATCTG  1142
      ||||||||||||||||||| || || ||||||||||   ||||  |||||
seq2  TCCTCAGCAGCACATGCTG-CTGGTGGTGTTTTAGAATCTCGC--ATCTG  1140

seq1  -ATCT-GTG-TATTTCAAGATCATTTTGATTGGCATTTCC  1179
       |||| ||| || |||||||||| |||||||| |||||||
seq2  AATCTGGTGTTAATTCAAGATCA-TTTGATTGCCATTTCC  1179


seq1: chr15_17037866_17039000
seq2: B6Ng01-178H01.g_65_1193 (reverse)

seq1  TTCATTATGTC-ATACCCTCTATTGCAAATGTAGTTCTCAGCTAAAATTA  49
      ||||||||||| |||||||| |||||||  |||| |||||||||||||||
seq2  TTCATTATGTCAATACCCTC-ATTGCAA--GTAG-TCTCAGCTAAAATTA  46

seq1  TCAAAATTGAACCATCCCAATA--TCTTTATAAATTATCATCTACAAAGT  97
      || ||| |||||  ||| ||||   |||||| ||||||||||||||||||
seq2  TC-AAACTGAACATTCCAAATAATCCTTTAT-AATTATCATCTACAAAGT  94

seq1  AAGGATTGGGTCCCTGGTGGACAACATGTTCTGTAGTGCGTTGTTGCTA-  146
      ||||| |||||||||||||||| ||||| ||||||||||| |||||||| 
seq2  AAGGA-TGGGTCCCTGGTGGAC-ACATG-TCTGTAGTGCG-TGTTGCTAT  140

seq1  TTTTTTAAGTTTCACTGGAACATGACACCAGACATCTGTTTGTATAATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTTCACTGGAACATGACACCAGACATCTGTTTGTATAATTT  190

seq1  GTGTAGTTTTTGTTTCAGAGTACCAACGAACATCCTTACTCATAACAGTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTTTTTGTTTCAGAGTACCAACGAACATCCTTACTCATAACAGTA  240

seq1  TCTTCATGAACCTTAAAGCATAGCATATACTAAGTTTGTAAAGAAGTGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGAACCTTAAAGCATAGCATATACTAAGTTTGTAAAGAAGTGAT  290

seq1  TAGCTTTTTAGTTCATCATAACACATAGGCAGAAGAAAAGATCATTGTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTAGTTCATCATAACACATAGGCAGAAGAAAAGATCATTGTTA  340

seq1  TCTAAAAGCAATGGAAGCATACTGTTGATCTCATGTTTAGGAAATCTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGCAATGGAAGCATACTGTTGATCTCATGTTTAGGAAATCTTAA  390

seq1  CTTACTTCACTCCATCACACAACCAACGTTTCTTATAATTCTCACACTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTCACTCCATCACACAACCAACGTTTCTTATAATTCTCACACTGA  440

seq1  TAATATTATGGTGAGCTTCTTTGATTGATGATATCATGCTTCTAAGTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTATGGTGAGCTTCTTTGATTGATGATATCATGCTTCTAAGTGTG  490

seq1  GGAAGGAAATGTCCGAGTTGTTGGATGTTTCTCCATTTCGTGTCTGTGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAATGTCCGAGTTGTTGGATGTTTCTCCATTTCGTGTCTGTGCA  540

seq1  GAGGATACAGATTATTGGCATTGGAAAGAATCGTATCACGTGCTCAAAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATACAGATTATTGGCATTGGAAAGAATCGTATCACGTGCTCAAAGA  590

seq1  GAGAAAGGCTCCAATTAGTAAAGAATAAGAAAACCATTCAAGTTTATAGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGCTCCAATTAGTAAAGAATAAGAAAACCATTCAAGTTTATAGG  640

seq1  TTAATACAACTTATTTGGTAGACTTACAAGTTACACTGTTTCCAGCAATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACAACTTATTTGGTAGACTTACAAGTTACACTGTTTCCAGCAATC  690

seq1  TATTATTTTCATCATTTTCATAACCAGCATAAAAATAAATACTGGATTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTCATCATTTTCATAACCAGCATAAAAATAAATACTGGATTAG  740

seq1  TCTGGCTTATGGATATTAGAATGAATATTAGAGAAGGATAAAGAATAAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTATGGATATTAGAATGAATATTAGAGAAGGATAAAGAATAAAT  790

seq1  TAAAAATTAGAAAGAAGATATTATGGAACTTAGAGTGAAATCAAAAACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTAGAAAGAAGATATTATGGAACTTAGAGTGAAATCAAAAACTT  840

seq1  CCAATCCCGTGGAATTTTTATACTACATTTTGTTAGAAAATGACATAATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCCGTGGAATTTTTATACTACATTTTGTTAGAAAATGACATAATG  890

seq1  AGAAATTATTAGTAAGTCTGTGTAATTACAATAGATATTTTAAACTCATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTAGTAAGTCTGTGTAATTACAATAGATATTTTAAACTCATG  940

seq1  ATAATTGTAACTGACATGTAAAAAAACCACCCTGGTTTATTACTTTACTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTAACTGACATGTAAAAAAACCACCCTGGTTTATTACTTTACTA  990

seq1  TGCTTATCAATTTTTAAAAGAATAGCAAAATTTGCAATCCATAACTAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCAATTTTTAAAAGAATAGCAAAATTTGCAATCCATAACTAATT  1040

seq1  TATTTTAGATAGTCATAAACTAGAATGAGTTAAAATGTTGCTAAATAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGATAGTCATAAACTAGAATGAGTTAAAATGTTGCTAAATAAAA  1090

seq1  ATAAACAGAAAAGAAATCTAGCAGACAGATACAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGAAAAGAAATCTAGCAGACAGATACAGAATTC  1129


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