BAC Information

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BAC

Clone NameB6Ng01-179C24
Chromosome15 (Build37)
Map Location 91,585,174 - 91,723,018
singlet/doubletdoublet
Overlap geneLrrk2, Muc19, Smgc
Upstream geneEG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
Downstream geneLOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179C24.bB6Ng01-179C24.g
ACCGA005978GA005979
length704931
definitionB6Ng01-179C24.b B6Ng01-179C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,722,315 - 91,723,018)(91,585,174 - 91,586,087)
sequence
gaattctttattactcaccactcattgcagccaacagaagtaacacttcc
ctgttcatattctctgtcaccaaaagagcagggacagtcatcaggatgta
tacatatccctttagagttacggaccattcctacaggacagtagcaccca
cgtttgcaaggcaagtcaccctataagaagacatgggaatcaacacttct
gtcatcatggtacaccatcagtttcaagttaagtgcatcaatatggctaa
ggtccatctggggtccacatttgacaagtacaagggatcatgcagacaca
caaatgatctaattattttctgataaattctagcttctattaccctgaaa
gatttaaagttttaaaaggctccactctgatgtgatgttacccacctcaa
aatcaggtatgttccgggtagcacatgtcctttctgtccttctctgggcc
ttggggtctttgcagtctatgtattcagcccctctggaacagttttctgt
gagacaaaaacagggagctgttactgtagaactcctggtctgtctttagc
cacgttatttaagaagtaggagttctggcacgtggctctatctccagcat
tagggatactgaagtaggactgttatcctttcaaagacagcctgggatgc
tttgtttgagtttggcaatatgtatgtatgtatgtatgtatgtatgtatg
tatg

gaattcaagtagaaattctgatgggtggaactaatggaggtcggttgccc
cctggtggtggtctgagttagttatttggctgctatctttttcttcttat
tctttctttcttttatatatatatataattaggtattgtcctcatttaca
tttccaatgctataccaaaagtcccccataccctcccccccactccccta
cccacccacccccactttttggccctggcgttcccctgtactggggcata
taaagtttgcaagtccaatgggcctctctttccagtgatagccaactagg
ccatcttttgatacatatgcagctagaatcaagagttgcatttctctcta
aaactagacttttcatgtgaggaaaaaaagcctaaaaaagatatctgtta
tagaaactattatctcaagaccctcactgaaaaatatcgctctctgtctc
tcatcgactgctgcagacagtgggctttttgtcaggttgggatcgtcagc
agctaaataaatcgcattttccagagtttcaaattccatgaaaaaacaac
ttggtgaggagatgttgtgtttccagttctaactcttgatgtctacagtt
cggtagtccaatacttgtggttatatttttatctcagaaagaaatatccc
aagctttcataatagacttatatcttaccccccaccccggtgctttgcat
attaactcagtgtattacaaaatgagatcattcattcttggttagttatt
ttgccctttattttctgaaatagaattttttgtattactagataatttat
tccatgctattttatttcacagatttttcccctcccaaattgactctaat
gtccataaaatttcgtactttaattttcatctttctgttcactaaccaat
tagatagggtctccacatcatgggtatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_91722315_91723018
seq2: B6Ng01-179C24.b_44_747 (reverse)

seq1  CATACATACATACATACATACATACATACATACATATTGCCAAACTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATACATACATACATATTGCCAAACTCAAA  50

seq1  CAAAGCATCCCAGGCTGTCTTTGAAAGGATAACAGTCCTACTTCAGTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATCCCAGGCTGTCTTTGAAAGGATAACAGTCCTACTTCAGTATC  100

seq1  CCTAATGCTGGAGATAGAGCCACGTGCCAGAACTCCTACTTCTTAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGCTGGAGATAGAGCCACGTGCCAGAACTCCTACTTCTTAAATAA  150

seq1  CGTGGCTAAAGACAGACCAGGAGTTCTACAGTAACAGCTCCCTGTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTAAAGACAGACCAGGAGTTCTACAGTAACAGCTCCCTGTTTTTG  200

seq1  TCTCACAGAAAACTGTTCCAGAGGGGCTGAATACATAGACTGCAAAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGAAAACTGTTCCAGAGGGGCTGAATACATAGACTGCAAAGACC  250

seq1  CCAAGGCCCAGAGAAGGACAGAAAGGACATGTGCTACCCGGAACATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCCAGAGAAGGACAGAAAGGACATGTGCTACCCGGAACATACCT  300

seq1  GATTTTGAGGTGGGTAACATCACATCAGAGTGGAGCCTTTTAAAACTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAGGTGGGTAACATCACATCAGAGTGGAGCCTTTTAAAACTTTA  350

seq1  AATCTTTCAGGGTAATAGAAGCTAGAATTTATCAGAAAATAATTAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCAGGGTAATAGAAGCTAGAATTTATCAGAAAATAATTAGATCA  400

seq1  TTTGTGTGTCTGCATGATCCCTTGTACTTGTCAAATGTGGACCCCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTCTGCATGATCCCTTGTACTTGTCAAATGTGGACCCCAGATG  450

seq1  GACCTTAGCCATATTGATGCACTTAACTTGAAACTGATGGTGTACCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGCCATATTGATGCACTTAACTTGAAACTGATGGTGTACCATGA  500

seq1  TGACAGAAGTGTTGATTCCCATGTCTTCTTATAGGGTGACTTGCCTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGTGTTGATTCCCATGTCTTCTTATAGGGTGACTTGCCTTGCA  550

seq1  AACGTGGGTGCTACTGTCCTGTAGGAATGGTCCGTAACTCTAAAGGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGGTGCTACTGTCCTGTAGGAATGGTCCGTAACTCTAAAGGGATA  600

seq1  TGTATACATCCTGATGACTGTCCCTGCTCTTTTGGTGACAGAGAATATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACATCCTGATGACTGTCCCTGCTCTTTTGGTGACAGAGAATATGA  650

seq1  ACAGGGAAGTGTTACTTCTGTTGGCTGCAATGAGTGGTGAGTAATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGTGTTACTTCTGTTGGCTGCAATGAGTGGTGAGTAATAAAGA  700

seq1  ATTC  704
      ||||
seq2  ATTC  704


seq1: chr15_91585174_91586087
seq2: B6Ng01-179C24.g_68_998

seq1  GAATTCAAGTAGAAATTCTGATGGGTGGAACTAATGGAGGTCGGTTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGAAATTCTGATGGGTGGAACTAATGGAGGTCGGTTGCCC  50

seq1  CCTGGTGGTGGTCTGAGTTAGTTATTTGGCTGCTATCTTTTTCTTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTGGTCTGAGTTAGTTATTTGGCTGCTATCTTTTTCTTCTTAT  100

seq1  TCTTTCTTTCTTTTATATATATATATAATTAGGTATTGTCCTCATTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTATATATATATATAATTAGGTATTGTCCTCATTTACA  150

seq1  TTTCCAATGCTATACCAAAAGTCCCCCATACCCTCCCCCCCACTCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATACCAAAAGTCCCCCATACCCTCCCCCCCACTCCCCTA  200

seq1  CCCACCCACCCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCACCCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATA  250

seq1  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATAGCCAACTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATAGCCAACTAGG  300

seq1  CCATCTTTTGATACATATGCAGCTAGAATCAAGAGTTGCATTTCTCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTTGATACATATGCAGCTAGAATCAAGAGTTGCATTTCTCTCTA  350

seq1  AAACTAGACTTTTCATGTGAGGAAAAAAAGCCTAAAAAAGATATCTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGACTTTTCATGTGAGGAAAAAAAGCCTAAAAAAGATATCTGTTA  400

seq1  TAGAAACTATTATCTCAAGACCCTCACTGAAAAATATCGCTCTCTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTATTATCTCAAGACCCTCACTGAAAAATATCGCTCTCTGTCTC  450

seq1  TCATCGACTGCTGCAGACAGTGGGCTTTTTGTCAGGTTGGGATCGTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGACTGCTGCAGACAGTGGGCTTTTTGTCAGGTTGGGATCGTCAGC  500

seq1  AGCTAAATAAATCGCATTTTCCAGAGTTTCAAATTCCATGAAAAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAATAAATCGCATTTTCCAGAGTTTCAAATTCCATGAAAAAACAAC  550

seq1  TTGGTGAGGAGATGTTGTGTTTCCAGTTCTAACTCTTGATGTCTACAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGGAGATGTTGTGTTTCCAGTTCTAACTCTTGATGTCTACAGTT  600

seq1  CGGTAGTCCAATACTTGTGGTTATATTTTTATCTCAGAAAGAAATATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTCCAATACTTGTGGTTATATTTTTATCTCAGAAAGAAATATCCC  650

seq1  AAGCTTTCATAATAGACTTATATCTTA-CCCCCACCCCGGTGCTTTGCAT  699
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGCTTTCATAATAGACTTATATCTTACCCCCCACCCCGGTGCTTTGCAT  700

seq1  ATTAACTCAGTGTATTACAAAATGAGATCATTCATTCTTGGTTAGTTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAGTGTATTACAAAATGAGATCATTCATTCTTGGTTAGTTATT  750

seq1  T--GCCTTTA-TTTCTGAAATAGAA-TTTTTGTATTACTAGATAATTATT  795
      |   |||||| |||||||||||||| |||||||||||||||||||||  |
seq2  TTGCCCTTTATTTTCTGAAATAGAATTTTTTGTATTACTAGATAATTTAT  800

seq1  TCCATGCTATTTTA-TTCACAGA-TTTTCCCCT-CCAAATTGACTCT-AT  841
      |||||||||||||| |||||||| ||||||||| ||||||||||||| ||
seq2  TCCATGCTATTTTATTTCACAGATTTTTCCCCTCCCAAATTGACTCTAAT  850

seq1  GTCCAT-AAATTTCTTACTTTAA-TTTCATC-TTCTGTTCACT-ACCATT  887
      |||||| ||||||| |||||||| ||||||| ||||||||||| |||| |
seq2  GTCCATAAAATTTCGTACTTTAATTTTCATCTTTCTGTTCACTAACCAAT  900

seq1  TAGATAGG--TTTCACATCAT--GTATCATA  914
      ||||||||   | ||||||||  ||||||||
seq2  TAGATAGGGTCTCCACATCATGGGTATCATA  931


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