BAC Information

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BAC

Clone NameB6Ng01-179H15
Chromosome15 (Build37)
Map Location 75,376,597 - 75,377,641
singlet/doubletsinglet
Overlap genenone
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik
Downstream geneLy6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H15.bB6Ng01-179H15.g
ACCGA006184GA006185
length1,0611,003
definitionB6Ng01-179H15.b B6Ng01-179H15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattcccagcacccacatcaggcagcttctagccacctgtaacc
ccaagttcagagactctgatggcctcttctggtctctgagggcacctgga
cacacgtggtatatatggagataaaagcaggcacacatgtacacattaat
aaaaagaaatgatttttgaaaaaagattggataagctttattgtgtgaat
ttgtttgtgtatatgtggggtaagggaagggcattcagagatcagaagac
aagtaagggagccagttctcttcattcatcgtgtgcatcccagggataga
acccaggttgtcaggcttggcagaggtgcctttagctacactgaactatt
ttgctggtttgagtggttaattttaattgtttctatcattgggagaaaat
gagctacttgtgtagatacataataagcagatgctatctcatattgtaaa
agccactctacttgttttgcaccatttgtatgcacgtggtggtattatat
accatttgtatatatgtggtggtattaactctggactaaactaaaatgtg
acggagaaagaaagcggcccttggatggcaataaagtaacctttatcaca
gcatggtcctgtgaatgaccacggtcacctgtgagatgcagaaacctgga
cccagctctgctcagctccagtccttctttccatgacgcaccctgacaca
gaggggctattttctcttttaattgcccataattatgtaggaggtccttg
acatgataagccatacccagtaaagccagcattgcttacggtctgccaag
cctgtcaggataaggactctcttggtctctgcccaccagtgtgcaaccag
caagagcttcagctggcaggatgccaggacttctcactcatttttaagcc
tcttctttgagagtatcaacaggagaggagggagaaacagtcagctaata
atctttgcctttccgagtaatgttagtggtgtgcatgcgagggttgttat
gtgttatgtacatgtactgttgaagagggtatgtattacacctcaatgca
ctgtgtttcct
gaattctttgtctagttctgtatctgattttttaatggggttatttgatt
ttctggtgtccatcttcttgagttctttatatatattggatattagaccc
ctatctgatttaggattgataaagaccctctcccaatctgttggtggcct
ttttgtcttattgacagtgtcctttgccttacagaaactttgcaatttta
tgaggtcccatttgtcaattctcaatcttacagcacaagctattgctgtt
ctgtttaggaatttttaccctgtgcccatatcttcaaggcttttctccac
tttctcctctataagtttcactctctctggttttatgtggcattcattga
tccacttagactagagctttgtacaaggatataagaatggatcaattcgc
attcttctataataagtgccagttgtgccagcaacatttgttgaaaattc
tgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcgattctattccattgatc
tacctgtctgtcactgtaccagtaccatgcagtttttatctcaattgctc
tgtagtacagctttaggtcaggcatggtgattccaccagaggttctttta
ttgttgacaatagtttttacaatcctaggtttttttgttatcccggatga
atgtgtaaattgccctttctaactcaatgaagaattgaggtggaatttag
atggggattgcattgaatctgtagattgcttttcagcaaaatagcccatt
tttgactatgttttatcctgccaatccatgagcatggggagacctttcca
tctctggagatcttcaattttctttctcagaaagttgaagttcttatcat
acagatctttaccttccttagttagattcaaccccaaggtatttttatta
atttgtgattattttgaagggtgttatttccataatttctttcctcagcc
tgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75376597_75377641
seq2: B6Ng01-179H15.b_43_1101 (reverse)

seq1  GAAACACAGTGCA-TGA-GTGT-ATACATACCCTCTTC-ACA-TACATGT  45
      ||||||||||||| ||| |||| ||||||||||||||| ||| |||||||
seq2  GAAACACAGTGCATTGAGGTGTAATACATACCCTCTTCAACAGTACATGT  50

seq1  ACATAAACACAT-ACAACCCTCGCATGCACA-CACTAACA-TACTCGGAA  92
      |||| ||||||| |||||||||||||||||| |||||||| |||||||||
seq2  ACAT-AACACATAACAACCCTCGCATGCACACCACTAACATTACTCGGAA  99

seq1  AGGCAAAGATTATTAGCTGACTG-TTCTCCCTCCTCTCCTGTTGATACTC  141
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCAAAGATTATTAGCTGACTGTTTCTCCCTCCTCTCCTGTTGATACTC  149

seq1  TCAAAG-AGAGGCTT-AAAATGAGTGAGAAGTCCTGGCATCCTGCCAGCT  189
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGAGGCTTAAAAATGAGTGAGAAGTCCTGGCATCCTGCCAGCT  199

seq1  GAAGCTCCTGCTGG-TGCACACTGGTGGGCAGAGACC-AGAGAGTCCTTA  237
      ||||||| |||||| |||||||||||||||||||||| ||||||||||||
seq2  GAAGCTCTTGCTGGTTGCACACTGGTGGGCAGAGACCAAGAGAGTCCTTA  249

seq1  TCCTGACAGGCTTGGCAGACCGTAAGCAATGCTGGCTTTACTGGGTATGG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGGCTTGGCAGACCGTAAGCAATGCTGGCTTTACTGGGTATGG  299

seq1  CTTATCATGTC-AGGACCTCCTACATAATTATGGGCAATT-AAAGAGAAA  335
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CTTATCATGTCAAGGACCTCCTACATAATTATGGGCAATTAAAAGAGAAA  349

seq1  ATAGCCCCTCTGTGTCAGGGTGCGTCATGGAAAGAAGGACTGGAGCTGAG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCTCTGTGTCAGGGTGCGTCATGGAAAGAAGGACTGGAGCTGAG  399

seq1  CAGAGCTGGGTCCAGGTTTCTGCATCTCACAGGTGACCGTGGTCATTCAC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGGGTCCAGGTTTCTGCATCTCACAGGTGACCGTGGTCATTCAC  449

seq1  AGGACCATGCTGTGATAAAGGTTACTTTATTGCCATCCAAGGGCCGCTTT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATGCTGTGATAAAGGTTACTTTATTGCCATCCAAGGGCCGCTTT  499

seq1  CTTTCTCCGTCACATTTTAGTTTAGTCCAGAGTTAATACCACCACATATA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCGTCACATTTTAGTTTAGTCCAGAGTTAATACCACCACATATA  549

seq1  TACAAATGGTATATAATACCACCACGTGCATACAAATGGTGCAAAACAAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGGTATATAATACCACCACGTGCATACAAATGGTGCAAAACAAG  599

seq1  TAGAGTGGCTTTTACAATATGAGATAGCATCTGCTTATTATGTATCTACA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGCTTTTACAATATGAGATAGCATCTGCTTATTATGTATCTACA  649

seq1  CAAGTAGCTCATTTTCTCCCAATGATAGAAACAATTAAAATTAACCACTC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGCTCATTTTCTCCCAATGATAGAAACAATTAAAATTAACCACTC  699

seq1  AAACCAGCAAAATAGTTCAGTGTAGCTAAAGGCACCTCTGCCAAGCCTGA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCAAAATAGTTCAGTGTAGCTAAAGGCACCTCTGCCAAGCCTGA  749

seq1  CAACCTGGGTTCTATCCCTGGGATGCACACGATGAATGAAGAGAACTGGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGGGTTCTATCCCTGGGATGCACACGATGAATGAAGAGAACTGGC  799

seq1  TCCCTTACTTGTCTTCTGATCTCTGAATGCCCTTCCCTTACCCCACATAT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTACTTGTCTTCTGATCTCTGAATGCCCTTCCCTTACCCCACATAT  849

seq1  ACACAAACAAATTCACACAATAAAGCTTATCCAATCTTTTTTCAAAAATC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACAAATTCACACAATAAAGCTTATCCAATCTTTTTTCAAAAATC  899

seq1  ATTTCTTTTTATTAATGTGTACATGTGTGCCTGCTTTTATCTCCATATAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTATTAATGTGTACATGTGTGCCTGCTTTTATCTCCATATAT  949

seq1  ACCACGTGTGTCCAGGTGCCCTCAGAGACCAGAAGAGGCCATCAGAGTCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGTGTCCAGGTGCCCTCAGAGACCAGAAGAGGCCATCAGAGTCT  999

seq1  CTGAACTTGGGGTTACAGGTGGCTAGAAGCTGCCTGATGTGGGTGCTGGG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGGGGTTACAGGTGGCTAGAAGCTGCCTGATGTGGGTGCTGGG  1049

seq1  AATTGAATTC  1045
      ||||||||||
seq2  AATTGAATTC  1059