BAC Information

Click to search

BAC

Clone NameB6Ng01-180L16
Chromosome15 (Build37)
Map Location 50,890,862 - 50,892,014
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180L16.bB6Ng01-180L16.g
ACCGA007082GA007083
length1,1551,216
definitionB6Ng01-180L16.b B6Ng01-180L16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgatttctgtctaacttgctctgatcatggtttttcttcatct
cagtaaatggcaaatttgtttttttttttctaaatattttattccaaaca
tgtgacataaattagctgaggaacttctgtttcgtggacttcactgtcct
atgtatttaaaatacattgatgaacaaaacaagcaaaggatttttccttt
gtaacaattggatttcagcaatattcacagttgccccatttattgttcct
caacatccctcatagccgtatctatctacaaatccgtttaatgtcctttc
aaacactgtgcatatcgccaaagtttctctcagtctcattcccatcacag
aggtccacttggtccttggtactctatagccgtgcttcacaaccttccta
atgctctgcccttaaatacatttcctcatgtggtcacaattcccaaccat
aattttgttgctacttcataactgtaggtttgtgaatgttatgaattgta
acgtccatatcttatgtgcagcgggtatgacatgggacccctgtgagggt
tgcaactcacaggttaagaatagctactctacgacttcattttcttgtac
cacttggaaggactcttaaaataggatagaaatgtgactattctgtttac
agcgttttcctggattttcatctccctcagaccaagatttgaaatggtta
tcttgacctacatgctcatgatggtctgccttgtactcactctctgaact
cctctcttacttttatctcctagtacattctatacccatccaaacggatc
actggacaaaccaaagctattgccacctcaggacttttgtccatcctgga
tcactctattctgagaggtccccatgactcactttctcattttatttaca
tctgccctccagtgtcagcctgtctaaagtaatttctcctaaactttctg
taggaaatagtcccagcccagcctttttttctcagtgtattttttaaatg
ttctttatatacttatgaccaattcaggatttattataataagcagcatt
atgctattgctcatctcttctatgaatgggagcttccaagaagataagaa
caaggactacttcccttttaatgtagtcccaggtactttcagataatata
tatat
gaattcctatcatgtccttctgtcagtcagtcttgggccccacatttggc
ctttggtgtgttagtaggaacaaaatgcctattcttctacctaaatccag
gaagagattttgtgtctgatcttattcctttttgtatttatcacttttct
gtttggaagtattaatttttttgtcttttgagccatttctgtcatagtat
ttttattttttaaaaattaaataaataaaagagtcattgagatggctcag
tgaataaagccatctgttactaagcttgatgacttgagttcatccctgaa
gtcatatgatggaatgagggaagtacaagttgtcctatatcctccttgca
tgtgccttggtatatgcatcccctttccctgtggaaggctttctcagcct
ttttatttgcctgtagttctctgtgtataactaactctaccttctgtccc
aattagcacacatattggtgtcatccttgttcaactcatgtttgggaaac
catattagtgagatttccaaaatgtagcttctgacatttctattagacac
aatcttatatcaaattccttgttcctctggctcttaacattttctacacc
ctaccccccaccttcttcttcagagtttcttgagtcttgggttcaggaat
attttctagatatatccagtcagactggacttcacaactcttcattactt
tccattttgactagctgtggttttctggaattctttctctgtctgtttca
aagagaattttcattgatgaggggtgaagactaattttatgtgtgggtat
aaggacaaatactttgagtatagttagatattatgctgatttagaaaagt
agtggtggtaggttttcctctaagacccatgacttcattaggtctggtta
actggttagttaactgggaagtttcctcccctaagcactatcttttcata
gtaccagaacgcaagccttccacttgcagggaagaaactaacaagttccc
cccgcccagttgttaattcttcatgaattacaatgaattgttaattgtgg
caggcaatcgcattacttaattgtatatcagtgggcatgcataccttgtg
gtaacagctagcttctcttaatgactttaaacttgctagcatcaaggata
tgcagctaatggcaactgaacttgtactttgagctttgtaatgaatatct
atatctggatttaccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50890862_50892014
seq2: B6Ng01-180L16.b_47_1201

seq1  GAATTCCTGATTTCTGTCTAACTTGCTCTGATCATGGTTTTTCTTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTTCTGTCTAACTTGCTCTGATCATGGTTTTTCTTCATCT  50

seq1  CAGTAAATGGCAAATTTGTTTTTTTTTTTCTAAATATTTTATTCCAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATGGCAAATTTGTTTTTTTTTTTCTAAATATTTTATTCCAAACA  100

seq1  TGTGACATAAATTAGCTGAGGAACTTCTGTTTCGTGGACTTCACTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATAAATTAGCTGAGGAACTTCTGTTTCGTGGACTTCACTGTCCT  150

seq1  ATGTATTTAAAATACATTGATGAACAAAACAAGCAAAGGATTTTTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTAAAATACATTGATGAACAAAACAAGCAAAGGATTTTTCCTTT  200

seq1  GTAACAATTGGATTTCAGCAATATTCACAGTTGCCCCATTTATTGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAATTGGATTTCAGCAATATTCACAGTTGCCCCATTTATTGTTCCT  250

seq1  CAACATCCCTCATAGCCGTATCTATCTACAAATCCGTTTAATGTCCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCCTCATAGCCGTATCTATCTACAAATCCGTTTAATGTCCTTTC  300

seq1  AAACACTGTGCATATCGCCAAAGTTTCTCTCAGTCTCATTCCCATCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGTGCATATCGCCAAAGTTTCTCTCAGTCTCATTCCCATCACAG  350

seq1  AGGTCCACTTGGTCCTTGGTACTCTATAGCCGTGCTTCACAACCTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACTTGGTCCTTGGTACTCTATAGCCGTGCTTCACAACCTTCCTA  400

seq1  ATGCTCTGCCCTTAAATACATTTCCTCATGTGGTCACAATTCCCAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGCCCTTAAATACATTTCCTCATGTGGTCACAATTCCCAACCAT  450

seq1  AATTTTGTTGCTACTTCATAACTGTAGGTTTGTGAATGTTATGAATTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTGCTACTTCATAACTGTAGGTTTGTGAATGTTATGAATTGTA  500

seq1  ACGTCCATATCTTATGTGCAGCGGGTATGACATGGGACCCCTGTGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCATATCTTATGTGCAGCGGGTATGACATGGGACCCCTGTGAGGGT  550

seq1  TGCAACTCACAGGTTAAGAATAGCTACTCTACGACTTCATTTTCTTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTCACAGGTTAAGAATAGCTACTCTACGACTTCATTTTCTTGTAC  600

seq1  CACTTGGAAGGACTCTTAAAATAGGATAGAAATGTGACTATTCTGTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGAAGGACTCTTAAAATAGGATAGAAATGTGACTATTCTGTTTAC  650

seq1  AGCGTTTTCCTGGATTTTCATCTCCCTCAGACCAAGATTTGAAATGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTCCTGGATTTTCATCTCCCTCAGACCAAGATTTGAAATGGTTA  700

seq1  TCTTGACCTACATGCTCATGATGGTCTGCCTTGTACTCACTCTCTGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACCTACATGCTCATGATGGTCTGCCTTGTACTCACTCTCTGAACT  750

seq1  CCTCTCTTACTTTTATCTCCTAGTACATTCTATACCCATCCAAACGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTACTTTTATCTCCTAGTACATTCTATACCCATCCAAACGGATC  800

seq1  ACTGGACAAACCAAAGCTATTGCCACCTCAGGACTTTTGTCCATCCTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACAAACCAAAGCTATTGCCACCTCAGGACTTTTGTCCATCCTGGA  850

seq1  TCACTCTATTCTGAGAGGTCCCCATGACTCACTTTCTCATTTTATTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTATTCTGAGAGGTCCCCATGACTCACTTTCTCATTTTATTTACA  900

seq1  TCTGCCCTCCAGTGTCAGCCTGTCTAAAGTAATTTCTCCTAAAC-TTCTG  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTGCCCTCCAGTGTCAGCCTGTCTAAAGTAATTTCTCCTAAACTTTCTG  950

seq1  TAGGAAATAGTCCCAAGCCCAGCCTTTTTTTTCTCAGTGTA-TTTTTAAA  998
      |||||||||||||| ||||||||| |||||||||||||||| ||||||||
seq2  TAGGAAATAGTCCC-AGCCCAGCC-TTTTTTTCTCAGTGTATTTTTTAAA  998

seq1  TGTTCTTTATATACTTATGACCAATTCAGGAATTTATTATAATAGCAAGC  1048
      |||||||||||||||||||||||||||||| |||||||||||||   |||
seq2  TGTTCTTTATATACTTATGACCAATTCAGG-ATTTATTATAATAAGCAGC  1047

seq1  AATTATTGCTATTGCTCATCTCTTCTATGAATGGGAGCT--CCAGGAGAT  1096
       |||| |||||||||||||||||||||||||||||||||  | || ||||
seq2  -ATTA-TGCTATTGCTCATCTCTTCTATGAATGGGAGCTTCCAAGAAGAT  1095

seq1  AAG-ACAA-GACTTAACTTCCCTTTTTAATGTAGTCCCA-GTACTTCAAG  1143
      ||| |||| ||||  ||||||| |||||||||||||||| ||||||  ||
seq2  AAGAACAAGGACT--ACTTCCC-TTTTAATGTAGTCCCAGGTACTTTCAG  1142

seq1  ---ATATATATAT  1153
         ||||||||||
seq2  ATAATATATATAT  1155