BAC Information

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BAC

Clone NameB6Ng01-180M03
Chromosome15 (Build37)
Map Location 17,864,023 - 17,865,201
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162
Downstream geneLOC666835, LOC666839, Cdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180M03.bB6Ng01-180M03.g
ACCGA007104GA007105
length9911,171
definitionB6Ng01-180M03.b B6Ng01-180M03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatacacatgtagttaatgtactatagtttgtataaaagtcaca
caatattaaacacaataaacattcacagataattaaaaaaaactttccac
tatgtacagaaatatgaatctttatacaccagctcagtcaatcaagcagt
actgttattctcagtatctataaaaggatggagtcctgagggaaatgaga
tgtttaagtgatggagtctgttttcattcccttagctctttgagtataaa
gggtcatataaacattcataccctagaagtgttgttcattagtcatttga
gaataaaaaaaaattggcatatcatgcagatacttcatactgacacaaaa
tgatgctcatattgtgtaatatgaaagtagaaatgttttgatatgtcaaa
aatctttcattggtatcatcacttttgttgatccaaatagacattattca
tgcttgtcattatatatatatatatatatatatatatatatatatatata
tatataatttttattgagatggtaatttacattttaatttatttgtgata
aaaataatgtaaaacaaatatcatgtaaagaactatttatatatgtccac
atacatgagagtaaatatgtgtgagtgtgtgtgatgttttcgaattgtga
tttgttttttttatttatactctatgagctatagcacacaactcgcgtat
gtatgtgtatgtgtcatgttttacacacacacagctaggggaatacagag
atgcacacacatacacatcatttttttcaagaatagctctacttttatat
atttatagacagaaactgccatgtgctactgtgcgaggcgcggacattga
tatatagatctatgcagagacacagactacattccatgagagtgagtatt
aacagtgtacatgagcgagtgcttcagcaatataaataataacattagta
tgtatgattgtgggtgatcgctcctacgcgatgcggatatg

gaattcagatttatataacatgaatattgttatttgtttaaaaaaagaaa
taggtttattagcctgcaaaggggaaaggcagtcttgtagtaacggaaaa
cccaccccataggcatttttctaatgttacttccaaagttttacttaaga
tatgaaatagaattagtaagtagcataggacagatattatttttgacaca
tctaattttctttgccaagttatttttaatattaatttcatgaaactaga
taagaaaacataaataccaagcttttatagtctcatccatatcataagta
attaccacaaataattagtcatcaattttgaggcagattgcttagggaaa
cataagacagtctgtggatattctctgctactaatatgtttttaaatttc
aagatgaatagggacaatgagaaaagcaagagaaaaataattttgaccat
acataacacagcattatttaattacagaacacttattgtagttgaataga
attaattaatctcataatattatatatacacatgtatgtatatataggta
aaataaaagcaagaaaaaaataaagaagtaatctgaaatgagttctatat
ttacattaatcaatatatattgaaaacattctagttgttttaattacatt
aataatagacacaaaattgttcttatccatagatagtttattacagatat
ttcctatttttttcagtaactttaacaccaacctgagagataaaacactc
ttaaatacatattgttaacaaagaataaatattctgcctttgaatatgaa
atgtgtccacatacttgtaacattgtatagtatataggaatatatttaag
taaacgtatctttcatcatcttccacttgaaagagtatacatataatata
caaaaaagtattcctaattctgcttgtgcctgtggaatgtgcagaagtca
tttgcattctaatagttatcaaggaagttcactagaacctgtaaattgag
ttattctccccgagttttaggaagaagtttcattgaagaacagatgaaat
agctttgtgcgatgaatagaaggtagcagtatcaccctgatcataagaat
tgaattggtgtgtgctcacctcggtccagcccagaataaccacatggtcg
gattccttctacagccttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17864023_17865201
seq2: B6Ng01-180M03.g_66_1236 (reverse)

seq1  AAAAAGGCTGTTGAGAAGAATCTGACCATGTTGTGTTTTTTCT-TGCTGG  49
      ||||||||||| || | ||||| |||||   |||| || ||||  |||||
seq2  AAAAAGGCTGTAGA-AGGAATCCGACCA---TGTGGTTATTCTGGGCTGG  46

seq1  A-CGAGGTGAGCACAACACAAATCCAATTCTTATGATTCCAGGGTGAATA  98
      | |||||||||||| |||| ||| |||||||||||||  ||||||| |||
seq2  ACCGAGGTGAGCAC-ACACCAATTCAATTCTTATGAT--CAGGGTG-ATA  92

seq1  CTGCTAACCTCTATCATTCGCACAAAGCTATTTCAATTCTG-TCTTCAAT  147
      |||||| | |||||   ||||||||||||||||||  |||| ||||||||
seq2  CTGCTACCTTCTATTCATCGCACAAAGCTATTTCA--TCTGTTCTTCAAT  140

seq1  GAAACCTTCTCCCTAAAACTCGGGGAAGAATAACTCAATTTACAGGTTCT  197
      |||| ||||| |||||||||||||| ||||||||||||||||||||||||
seq2  GAAA-CTTCTTCCTAAAACTCGGGG-AGAATAACTCAATTTACAGGTTCT  188

seq1  AGTGAACTTCCTTGATAACTATTAGAATGCAAATGACTTCTGCACATTCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAACTTCCTTGATAACTATTAGAATGCAAATGACTTCTGCACATTCC  238

seq1  ACAGGCACAAGCAGAATTAGGAATACTTTTTTGTATATTATATGTATACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACAAGCAGAATTAGGAATACTTTTTTGTATATTATATGTATACT  288

seq1  CTTTCAAGTGGAAGATGATGAAAGATACGTTTACTTAAATATATTCCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTGGAAGATGATGAAAGATACGTTTACTTAAATATATTCCTAT  338

seq1  ATACTATACAATGTTACAAGTATGTGGACACATTTCATATTCAAAGGCA-  396
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATACTATACAATGTTACAAGTATGTGGACACATTTCATATTCAAAGGCAG  388

seq1  AATATTTATTCTTTGTTAACAATATGTATTTAAGAGTGTTTTATCTCTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTATTCTTTGTTAACAATATGTATTTAAGAGTGTTTTATCTCTCA  438

seq1  GGTTGGTGTTAAAGTTACTGAAAAAAATAGGAAATATCTGTAATAAACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGTTAAAGTTACTGAAAAAAATAGGAAATATCTGTAATAAACTA  488

seq1  TCTATGGATAAGAACAATTTTGTGTCTATTATTAATGTAATTAAAACAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGATAAGAACAATTTTGTGTCTATTATTAATGTAATTAAAACAAC  538

seq1  TAGAATGTTTTCAATATATATTGATTAATGTAAATATAGAACTCATTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTTTTCAATATATATTGATTAATGTAAATATAGAACTCATTTCA  588

seq1  GATTACTTCTTTATTTTTTTCTTGCTTTTATTTTACCTATATATACATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTTCTTTATTTTTTTCTTGCTTTTATTTTACCTATATATACATAC  638

seq1  ATGTGTATATATAATATTATGAGATTAATTAATTCTATTCAACTACAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATATAATATTATGAGATTAATTAATTCTATTCAACTACAATA  688

seq1  AGTGTTCTGTAATTAAATAATGCTGTGTTATGTATGGTCAAAATTATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTGTAATTAAATAATGCTGTGTTATGTATGGTCAAAATTATTTT  738

seq1  TCTCTTGCTTTTCTCATTGTCCCTATTCATCTTGAAATTTAAAAACATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTTTTCTCATTGTCCCTATTCATCTTGAAATTTAAAAACATAT  788

seq1  TAGTAGCAGAGAATATCCACAGACTGTCTTATGTTTCCCTAAGCAATCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCAGAGAATATCCACAGACTGTCTTATGTTTCCCTAAGCAATCTG  838

seq1  CCTCAAAATTGATGACTAATTATTTGTGGTAATTACTTATGATATGGATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATTGATGACTAATTATTTGTGGTAATTACTTATGATATGGATG  888

seq1  AGACTATAAAAGCTTGGTATTTATGTTTTCTTATCTAGTTTCATGAAATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATAAAAGCTTGGTATTTATGTTTTCTTATCTAGTTTCATGAAATT  938

seq1  AATATTAAAAATAACTTGGCAAAGAAAATTAGATGTGTCAAAAATAATAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAAAATAACTTGGCAAAGAAAATTAGATGTGTCAAAAATAATAT  988

seq1  CTGTCCTATGCTACTTACTAATTCTATTTCATATCTTAAGTAAAACTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTATGCTACTTACTAATTCTATTTCATATCTTAAGTAAAACTTTG  1038

seq1  GAAGTAACATTAGAAAAATGCCTATGGGGTGGGTTTTCCGTTACTACAAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAACATTAGAAAAATGCCTATGGGGTGGGTTTTCCGTTACTACAAG  1088

seq1  ACTGCCTTTCCCCTTTGCAGGCTAATAAACCTATTTCTTTTTTTAAACAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTTTCCCCTTTGCAGGCTAATAAACCTATTTCTTTTTTTAAACAA  1138

seq1  ATAACAATATTCATGTTATATAAATCTGAATTC  1179
      |||||||||||||||||||||||||||||||||
seq2  ATAACAATATTCATGTTATATAAATCTGAATTC  1171


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