BAC Information

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BAC

Clone NameB6Ng01-181I11
Chromosome15 (Build37)
Map Location 3,660,863 - 3,788,781
singlet/doubletdoublet
Overlap geneLOC223278
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr
Downstream geneFbxo4, AW549877, LOC100039196, Oxct1, Plcxd3, C6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181I11.bB6Ng01-181I11.g
ACCGA007663GA007664
length515732
definitionB6Ng01-181I11.b B6Ng01-181I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,788,261 - 3,788,781)(3,660,863 - 3,661,588)
sequence
tttccctagaatcagagttattcactggttcttgtttgtggtaaagctga
gcagctaatgctattcatatatgcattaaaaatgggacacatgtctttaa
aatgatcatttttctgtattgtcttgcattgcattatgatacctaacaaa
tgttgtaaataataaatatgggttatgtttcaaataagtcatcatatcag
aaaagataaaaataagcaagtcaatggatattaattttgtaaaattaatg
ttttaaattaaaattttgtaaaaaattaaccaacaagcatgttagttaaa
aaatataaaataattttttcttacatttttaagggatatctataatttta
taaatgtcgttctcttaggaaacaaattaaaacccttagaaatgatttgc
ttgaaatctatggaagaattatttctctcaggtaaatatgcttccatttt
tatagctagattgatttgaaaacataataatttaaaaattctgtttgtgt
gtgtgtgtgtgtgtg
gaattcttggaggggggaccaggaaaagggcaacatttggaatataaata
aataaaactttttaaaagatttttgtttttttttgtttttttttttttta
tagaacagagtttattctctattcatggggaggggagttgagaggttagt
agagacagagaaaggcagagagagagaacagagaagtaaaggctggccat
gagcactggggggcgggggcaaggagggggaagcaggaaggagaggacag
agcaggagcaagaaggctagagagttaaaagttttttaatagtgacattg
gtgttaggtacaattctcttggacttggaattatagactcatttctgccc
actctcctagtgcctcagcttgaaggtgtctcctctcacctacaattttt
gcaatatcttgacacttactttctcacattctgcccagcttaaggattct
gcttctgtatctcttatctccatcattttcatcaatttccacaaattaca
tgattttacttttcattatatccaagtaatatccccctgtgcattgagga
gtcctggagaagtgaaggtagatagtatgtgtaactttgatcaaaataca
ctgtatacatgtatacatacattttccaagaacaaatacaaaaatgttat
tttaattttccaagggtctaaaatttgaaccatttgtaaaaggaataagg
tatcccttggtagtagaatattttctattgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3788261_3788781
seq2: B6Ng01-181I11.b_43_563 (reverse)

seq1  CACACACACACACACACACAAACAGAATTTTTAAATTATTATGTTTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACAAACAGAATTTTTAAATTATTATGTTTTCAA  50

seq1  ATCAATCTAGCTATAAAAATGGAAGCATATTTACCTGAGAGAAATAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCTAGCTATAAAAATGGAAGCATATTTACCTGAGAGAAATAATTC  100

seq1  TTCCATAGATTTCAAGCAAATCATTTCTAAGGGTTTTAATTTGTTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAGATTTCAAGCAAATCATTTCTAAGGGTTTTAATTTGTTTCCTA  150

seq1  AGAGAACGACATTTATAAAATTATAGATATCCCTTAAAAATGTAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACGACATTTATAAAATTATAGATATCCCTTAAAAATGTAAGAAAA  200

seq1  AATTATTTTATATTTTTTAACTAACATGCTTGTTGGTTAATTTTTTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATATTTTTTAACTAACATGCTTGTTGGTTAATTTTTTACAA  250

seq1  AATTTTAATTTAAAACATTAATTTTACAAAATTAATATCCATTGACTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATTTAAAACATTAATTTTACAAAATTAATATCCATTGACTTGC  300

seq1  TTATTTTTATCTTTTCTGATATGATGACTTATTTGAAACATAACCCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATCTTTTCTGATATGATGACTTATTTGAAACATAACCCATAT  350

seq1  TTATTATTTACAACATTTGTTAGGTATCATAATGCAATGCAAGACAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTACAACATTTGTTAGGTATCATAATGCAATGCAAGACAATAC  400

seq1  AGAAAAATGATCATTTTAAAGACATGTGTCCCATTTTTAATGCATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGATCATTTTAAAGACATGTGTCCCATTTTTAATGCATATATG  450

seq1  AATAGCATTAGCTGCTCAGCTTTACCACAAACAAGAACCAGTGAATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTAGCTGCTCAGCTTTACCACAAACAAGAACCAGTGAATAACT  500

seq1  CTGATTCTAGGGAAAGAATTC  521
      |||||||||||||||||||||
seq2  CTGATTCTAGGGAAAGAATTC  521

seq1: chr15_3660863_3661588
seq2: B6Ng01-181I11.g_63_794

seq1  GAATTCTTGGAGGGGGGACCAGGAAAAGGGCAACATTTGGAATATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGGGGGGACCAGGAAAAGGGCAACATTTGGAATATAAATA  50

seq1  AATAAAACTTTTTAAAAGATTTTTGTTTTTTTTTGTTTTTTTTTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTTTTTAAAAGATTTTTGTTTTTTTTTGTTTTTTTTTTTTTTA  100

seq1  TAGAACAGAGTTTATTCTCTATTCATGGGGAGGGGAGTTGAGAGGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGAGTTTATTCTCTATTCATGGGGAGGGGAGTTGAGAGGTTAGT  150

seq1  AGAGACAGAGAAAGGCAGAGAGAGAGAACAGAGAAGTAAAGGCTGGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAAAGGCAGAGAGAGAGAACAGAGAAGTAAAGGCTGGCCAT  200

seq1  GAGCACTGGGGGGCGGGGGCAAGGAGGGGGAAGCAGGAAGGAGAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGGGGGGCGGGGGCAAGGAGGGGGAAGCAGGAAGGAGAGGACAG  250

seq1  AGCAGGAGCAAGAAGGCTAGAGAGTTAAAAGTTTTTTAATAGTGACATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGCAAGAAGGCTAGAGAGTTAAAAGTTTTTTAATAGTGACATTG  300

seq1  GTGTTAGGTACAATTCTCTTGGACTTGGAATTATAGACTCATTTCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGTACAATTCTCTTGGACTTGGAATTATAGACTCATTTCTGCCC  350

seq1  ACTCTCCTAGTGCCTCAGCTTGAAGGTGTCTCCTCTCACCTACAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTAGTGCCTCAGCTTGAAGGTGTCTCCTCTCACCTACAATTTTT  400

seq1  GCAATATCTTGACACTTACTTTCTCACATTCTGCCCAGCTTAAGGATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATCTTGACACTTACTTTCTCACATTCTGCCCAGCTTAAGGATTCT  450

seq1  GCTTCTGTATCTCTTATCTCCATCATTTTCATCAATTTCCACAAATTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTATCTCTTATCTCCATCATTTTCATCAATTTCCACAAATTACA  500

seq1  TGATTTTACTTTTCATTATATCCAAGTAATATCCCCCTGTGCATTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTACTTTTCATTATATCCAAGTAATATCCCCCTGTGCATTGAGGA  550

seq1  GTCCTGGAGAAGTGAAGGTAGATAGTATGTGTAACTTTGATCAAAATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAGAAGTGAAGGTAGATAGTATGTGTAACTTTGATCAAAATACA  600

seq1  CTGTATACATGTATACATACATTTTCCAAGAACAAATAC-AAAATGTTA-  648
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CTGTATACATGTATACATACATTTTCCAAGAACAAATACAAAAATGTTAT  650

seq1  TTTAATTTTCCAAGGGTCTAAAA-TTGAACCATTTGT-AAAGGAAT-AGG  695
      ||||||||||||||||||||||| ||||||||||||| |||||||| |||
seq2  TTTAATTTTCCAAGGGTCTAAAATTTGAACCATTTGTAAAAGGAATAAGG  700

seq1  TATCCCTTGGTAGTAGAATA-TTTCTATTGAA  726
      |||||||||||||||||||| |||||||||||
seq2  TATCCCTTGGTAGTAGAATATTTTCTATTGAA  732