BAC Information

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BAC

Clone NameB6Ng01-185B19
Chromosome15 (Build37)
Map Location 50,024,022 - 50,025,175
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185B19.bB6Ng01-185B19.g
ACCGA010311GA010312
length1,1421,163
definitionB6Ng01-185B19.b B6Ng01-185B19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaagaggaaagacaagtatcttagaagcacttaaagaaatg
ttcagcatccttactcatctaatgagaatcaaatctcattagagagttca
ttttatgccagtcaaaaaggtcatgacttataaaacaagtgacagctcat
ggtggcaatgatgcagtataaggggaacacttgtttattggtaagggagg
gggaaacttgcactgccactgtggaaatcagtatgtctatcccttaggaa
tctggaatagaactcccttaggaccccagtgtaccattattgggcacaca
cccaagggagtccacaaactactatatagacacttgctgttccatattta
ttgctgttctactcataatagccaaaaattggaaacaaactaggtgccca
tcaataaatgaaagaaaatattttacatttacacgatgaaatatcactca
gtcattaaaatatgaaattatgaatttctcaggataatgggtggaactag
aaaaaatcattctgcatgaagttattcagacgcagaaaaaatatgttatg
tattctttagtatatagatgttagctattaagccttcaacaagcaagcta
cagtccaggtaaccacagtggttaagtataaagtaagggaacagggggag
aaacagagcaccttaagaaggagaaatagaattatagctgtagatattca
aaggggacagtgacaggatgattaacaggaagatggggtgaagatggaga
caagggtgggaatatgggctgggatagttaaaatttaaggggctgtactg
gctggttttgtgtgtcaacttgatacatctggagttatcacagagaaagg
agctttcagttgaggaaatgcctttcataagatccaactgtaaggcattt
ttcttcaattagtgatcaaggggggaaaaggctcccttggtgggtgggga
cccatctctggggctggtagcccttggttctataagagagcatgctgatc
aatccatgggtaggcaagtccagtaatgacatcccttcattgtctctgca
tcagttctgtcttctgacctgcttgaagtcagttctctgacttctttagt
tgacgaacagcagctatggtagtgtaagccaaataaaaccct

gaattcacgtgacaggatcttcatatctctctggtgcttacaacaggtca
acaaaactcagtaactcttagagactgtgcaagataacaaaatggacatg
atcacaaatttgggggagaaacaaatttaaattgtggagtgtatgtggca
aaaggttcatatatagcccttgtccacctcaaataaagtgtatgtacatc
aggtgttttactgatgatcataggagagttgtgttcattgtttcacctaa
aagtgctgtaacctaaaatccttggtgaagcccttgccatcccacactca
tttccagctgaccgggatcccacagatcccaactgttccagactgtgctc
cacctgtgcagccctgtttgcagtggtacctgaacacactgaaagaggaa
aaaaaaaaagagggcgcagaaaacagggagaaatgagttcatgctgctgc
tcacatccctttctccattgatacagtcaagaacccctttcctggaatgt
tgccacccacattgtgtgaatttttccatgtcagtgaatttagtcaagat
aatcacccacaggcatgtccacagaaccttcttcttgtgtttagattttg
ttaaattaatggttaaacttattcattttattaaacaactatagagcaat
atcatttctatatcactttcaaaatacagaagaatgtgcatttcttagat
gcccacaaagcaatactggaaatacattgtgcatgaaaagctagatataa
aattctattataaaaataggtgtagaattcctgaaagtaaaaaacatgtt
ctcccatgcattaagttttcaatctgttcattattaccttcaatgtagaa
attgtatatgtttagtcttagtcaacctagactcagaaataatcatcatg
agatctgcatcaaatatctcaaattgtagtcaaggaatatatgcctcaat
tcctcagtgtcttcacccataaaatacagattacaatacggataggatat
tcaagaatttatatgggtaatacttatttgaaaaatcatattctatatgc
tgcaatttaatctgcagttatttgagccttgagttctattttggctgata
atatgcaaaatgtattaaggcactgtctagttaaggttttaaccttgctg
tgaacagacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50024022_50025175
seq2: B6Ng01-185B19.g_64_1226

seq1  GAATTCACGTGACAGGATCTTCATATCTCTCTGGTGCTTACAACAGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGACAGGATCTTCATATCTCTCTGGTGCTTACAACAGGTCA  50

seq1  ACAAAACTCAGTAACTCTTAGAGACTGTGCAAGATAACAAAATGGACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTCAGTAACTCTTAGAGACTGTGCAAGATAACAAAATGGACATG  100

seq1  ATCACAAATTTGGGGGAGAAACAAATTTAAATTGTGGAGTGTATGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAATTTGGGGGAGAAACAAATTTAAATTGTGGAGTGTATGTGGCA  150

seq1  AAAGGTTCATATATAGCCCTTGTCCACCTCAAATAAAGTGTATGTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCATATATAGCCCTTGTCCACCTCAAATAAAGTGTATGTACATC  200

seq1  AGGTGTTTTACTGATGATCATAGGAGAGTTGTGTTCATTGTTTCACCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTTTACTGATGATCATAGGAGAGTTGTGTTCATTGTTTCACCTAA  250

seq1  AAGTGCTGTAACCTAAAATCCTTGGTGAAGCCCTTGCCATCCCACACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTAACCTAAAATCCTTGGTGAAGCCCTTGCCATCCCACACTCA  300

seq1  TTTCCAGCTGACCGGGATCCCACAGATCCCAACTGTTCCAGACTGTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTGACCGGGATCCCACAGATCCCAACTGTTCCAGACTGTGCTC  350

seq1  CACCTGTGCAGCCCTGTTTGCAGTGGTACCTGAACACACTGAAAGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGCAGCCCTGTTTGCAGTGGTACCTGAACACACTGAAAGAGGAA  400

seq1  AAAAAAAAAGAGGGCGCAGAAAACAGGGAGAAATGAGTTCATGCTGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAGGGCGCAGAAAACAGGGAGAAATGAGTTCATGCTGCTGC  450

seq1  TCACATCCCTTTCTCCATTGATACAGTCAAGAACCCCTTTCCTGGAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCCCTTTCTCCATTGATACAGTCAAGAACCCCTTTCCTGGAATGT  500

seq1  TGCCACCCACATTGTGTGAATTTTTCCATGTCAGTGAATTTAGTCAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCACATTGTGTGAATTTTTCCATGTCAGTGAATTTAGTCAAGAT  550

seq1  AATCACCCACAGGCATGTCCACAGAACCTTCTTCTTGTGTTTAGATTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCACAGGCATGTCCACAGAACCTTCTTCTTGTGTTTAGATTTTG  600

seq1  TTAAATTAATGGTTAAACTTATTCATTTTATTAAACAACTATAGAGCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTAATGGTTAAACTTATTCATTTTATTAAACAACTATAGAGCAAT  650

seq1  ATCATTTCTATATCACTTTCAAAATACAGAAGAATGTGCATTTCTTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTATATCACTTTCAAAATACAGAAGAATGTGCATTTCTTAGAT  700

seq1  GCCCACAAAGCAATACTGGAAATACATTGTGCATGAAAAGCTAGATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACAAAGCAATACTGGAAATACATTGTGCATGAAAAGCTAGATATAA  750

seq1  AATTCTATTATAAAAATAGGTGTAGAATTCCTGAAAGTAAAAAACATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTATAAAAATAGGTGTAGAATTCCTGAAAGTAAAAAACATGTT  800

seq1  CTCCCATGCATTAAGTTTTCAATCTGTTCATTATTACCTTCAATGTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATGCATTAAGTTTTCAATCTGTTCATTATTACCTTCAATGTAGAA  850

seq1  ATTGTATATGTTTAGTCTTAGTCAACCTAGACTCAGAAATAATCATCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATATGTTTAGTCTTAGTCAACCTAGACTCAGAAATAATCATCATG  900

seq1  AGATCTGCATCAAATATCTCAAATTGTAGTCAAGGAATATATGCCTCAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGCATCAAATATCTCAAATTGTAGTCAAGGAATATATGCCTCAAT  950

seq1  TCCTCAGTGTCTTCAACCATAAAAATACAGATTACAATAC-GATA-GATA  998
      ||||||||||||||| |||| ||||||||||||||||||| |||| ||||
seq2  TCCTCAGTGTCTTCACCCAT-AAAATACAGATTACAATACGGATAGGATA  999

seq1  -TCAAGAA-TTATATGGGT-ATACTTATTTGAAAAATCATA-TCTATATG  1044
       ||||||| |||||||||| ||||||||||||||||||||| ||||||||
seq2  TTCAAGAATTTATATGGGTAATACTTATTTGAAAAATCATATTCTATATG  1049

seq1  CTGCAAATTAAATCTGCAGTTAATTGAG-CTTGAGTTCTATTTT-GCTGA  1092
      |||| |||| |||||||||||| ||||| ||||||||||||||| |||||
seq2  CTGC-AATTTAATCTGCAGTTATTTGAGCCTTGAGTTCTATTTTGGCTGA  1098

seq1  TAATATGCAAAATGTATTAA-GCACTGTCTTAGTTAGGGTTTTA---CTG  1138
      |||||||||||||||||||| |||||||| |||||| |||||||    ||
seq2  TAATATGCAAAATGTATTAAGGCACTGTC-TAGTTAAGGTTTTAACCTTG  1147

seq1  CTGTGAACAGACACCA  1154
      ||||||||||||||||
seq2  CTGTGAACAGACACCA  1163


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