BAC Information

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BAC

Clone NameB6Ng01-185P21
Chromosome15 (Build37)
Map Location 102,068,897 - 102,183,233
singlet/doubletdoublet
Overlap geneRarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas
Upstream geneNr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7
Downstream geneSp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185P21.bB6Ng01-185P21.g
ACCGA010954GA010955
length895909
definitionB6Ng01-185P21.b B6Ng01-185P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,068,897 - 102,069,788)(102,182,426 - 102,183,233)
sequence
gaattcaattcccagcaaccacatggtggctcacaaccatccgtaatgag
atctgatgccttcttctggtgtgtctgaagacagctacagggtacttaca
tataataaataaataaatgataaaaagtaaaggaagctaggttgtcagat
agcatttgcctagtttatggatggtacaaggttcctctccgagcaacaca
cacaaacacacacacaccaggactccatggaggttgctggattctcggtt
cctctctccccctgcctgtgcctgtccacctgtgtgactcaggagacctg
cagatctggggagggagagagagttgactcagaactaacccttagtgctg
atgccccggaggtcggtgattttcatcagcatccttgggaacatgtaggg
ttggctgggtctccgtcgccgggcatagagcctcagggcttccagcaggg
gctcctgcagcttgtccaccttctcgggctcttccaggtccattcggtct
acacaaggagattggatgaggcacggtaggacacagtgacaggcggctga
cgcctgacagaccttacttggagggcctcaaagctatctcatccactctt
tactcctgtcacttagccctccaggttagctcccctgacataaggccctg
tgtttactcctcagcaatgatgctgctctagaatatcactcccattaaat
tcctatctcagcactgtatccagggcttctgcgttctccggactctgcct
ccttctttttcccttagcctggttagccagaaagactatacataagctga
gaagtctgtaggaacaatttcccagggaaaaagacgacctgccacctggt
tcagagtggggatagggtctggatagagtcttggtgggagaggga
gaattcacagtgatccacccatttcggcttcctgagtgctgggactaaaa
gcatgtaccattaggccaggctaatacgtttagtttttctttttaaagag
ttaatttattgggaaatgaaaaccaaactaagagccaggtgatggtggca
gtggtggcacctttaatccctgtacttgggaggcagaggaagatggaact
ctgagttttgaggccagactggggtacctatggagtgaattctaggacag
acagggctacacagagaatccttctattgaaaaacaaaacaaagcaaaaa
gttatttgggggccagagagatggctcagtggctaagagcagttactgtt
cttgcagaggatcctggttctgttccccaaatctacatgatgattcagaa
ccatctgtaactcctgttccaggggagtccagcgccctttactggctgct
gtggacactgcatgcatgtggtgcacataggtgcatacaggcaaaacaca
aattaaaaaaatatttttaaaagccccttatactccctgtatagtactac
aggtgtgcatgcaccaccatgcccagtgacaaaagtgctctcgaggagga
gggtcaggctcagagtcagtttcaattaaaggctaggtgagtccatttct
ttgggtgtcaggtgaggcagagcatcatagattcaggagcaggtggaaga
gtttgcttattcataatggccaggaagcagagagatagcaatagcaggaa
aggctaataccgttcctgtgagtctcaccatcccacacttccctcccatt
tgtctattcagatttttgagctcacaatttgaattaagttagaattaaac
catctaaacatctctctgtagttctagccccccccccaaccccttcagtt
ttcagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102068897_102069788
seq2: B6Ng01-185P21.b_47_941

seq1  GAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAG  50

seq1  ATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGGGTACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCTTCTTCTGGTGTGTCTGAAGACAGCTACAGGGTACTTACA  100

seq1  TATAATAAATAAATAAATGATAAAAAGTAAAGGAAGCTAGGTTGTCAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAATAAATAAATGATAAAAAGTAAAGGAAGCTAGGTTGTCAGAT  150

seq1  AGCATTTGCCTAGTTTATGGATGGTACAAGGTTCCTCTCCGAGCAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGCCTAGTTTATGGATGGTACAAGGTTCCTCTCCGAGCAACACA  200

seq1  CACAAACACACACACACCAGGACTCCATGGAGGTTGCTGGATTCTCGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACACACACACCAGGACTCCATGGAGGTTGCTGGATTCTCGGTT  250

seq1  CCTCTCTCCCCCTGCCTGTGCCTGTCCACCTGTGTGACTCAGGAGACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCCCCCTGCCTGTGCCTGTCCACCTGTGTGACTCAGGAGACCTG  300

seq1  CAGATCTGGGGAGGGAGAGAGAGTTGACTCAGAACTAACCCTTAGTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGGGGAGGGAGAGAGAGTTGACTCAGAACTAACCCTTAGTGCTG  350

seq1  ATGCCCCGGAGGTCGGTGATTTTCATCAGCATCCTTGGGAACATGTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCGGAGGTCGGTGATTTTCATCAGCATCCTTGGGAACATGTAGGG  400

seq1  TTGGCTGGGTCTCCGTCGCCGGGCATAGAGCCTCAGGGCTTCCAGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGTCTCCGTCGCCGGGCATAGAGCCTCAGGGCTTCCAGCAGGG  450

seq1  GCTCCTGCAGCTTGTCCACCTTCTCGGGCTCTTCCAGGTCCATTCGGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCAGCTTGTCCACCTTCTCGGGCTCTTCCAGGTCCATTCGGTCT  500

seq1  ACACAAGGAGATTGGATGAGGCACGGTAGGACACAGTGACAGGCGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGAGATTGGATGAGGCACGGTAGGACACAGTGACAGGCGGCTGA  550

seq1  CGCCTGACAGACCTTACTTGGAGGGCCTCAAAGCTATCTCATCCACTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGACAGACCTTACTTGGAGGGCCTCAAAGCTATCTCATCCACTCTT  600

seq1  TACTCCTGTCACTTAGCCCTCCAGGTTAGCTCCCCTGACATAAGGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGTCACTTAGCCCTCCAGGTTAGCTCCCCTGACATAAGGCCCTG  650

seq1  TGTTTACTCCTCAGCAATGATGCTGCTCTAGAATATCACTCCCATTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTCCTCAGCAATGATGCTGCTCTAGAATATCACTCCCATTAAAT  700

seq1  TCCTATCTCAGCACTGTATCCAGGGCTTCTGCGTTCTCCGGACTCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTCAGCACTGTATCCAGGGCTTCTGCGTTCTCCGGACTCTGCCT  750

seq1  CCTTCTTTTTCCCTTAGCCTGGTTAGCCAGAAAGACTATACATAAGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTCCCTTAGCCTGGTTAGCCAGAAAGACTATACATAAGCTGA  800

seq1  GAAGTCTGTAGGAACAA-TTCCCAGGGAAAAAGACGACCTGCCACCTGG-  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  GAAGTCTGTAGGAACAATTTCCCAGGGAAAAAGACGACCTGCCACCTGGT  850

seq1  TCAGAGTGGGGATAGGGTCTGGATAGAGTC-TGGTGGGAGAGGGA  892
      |||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAGAGTGGGGATAGGGTCTGGATAGAGTCTTGGTGGGAGAGGGA  895

seq1: chr15_102182426_102183233
seq2: B6Ng01-185P21.g_67_873 (reverse)

seq1  ATAGACAAATGGGAGGGAAGTGTGGGATGGTGAGACTCACAGGAACGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAATGGGAGGGAAGTGTGGGATGGTGAGACTCACAGGAACGGTA  50

seq1  TTAGCCTTTCCCTGCTATTGCTATCTCTCTGCTTCCTGGCCATTATGAAT  100
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTTT-CCTGCTATTGCTATCTCTCTGCTTCCTGGCCATTATGAAT  99

seq1  AAGCAAACTCTTCCACCTGCTCCTGAATCTATGATGCTCTGCCTCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACTCTTCCACCTGCTCCTGAATCTATGATGCTCTGCCTCACCTG  149

seq1  ACACCCAAAGAAATGGACTCACCTAGCCTTTAATTGAAACTGACTCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAAGAAATGGACTCACCTAGCCTTTAATTGAAACTGACTCTGAG  199

seq1  CCTGACCCTCCTCCTCGAGAGCACTTTTGTCACTGGGCATGGTGGTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCTCCTCCTCGAGAGCACTTTTGTCACTGGGCATGGTGGTGCAT  249

seq1  GCACACCTGTAGTACTATACAGGGAGTATAAGGGGCTTTTAAAAATATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTGTAGTACTATACAGGGAGTATAAGGGGCTTTTAAAAATATTT  299

seq1  TTTTAATTTGTGTTTTGCCTGTATGCACCTATGTGCACCACATGCATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTGTGTTTTGCCTGTATGCACCTATGTGCACCACATGCATGCA  349

seq1  GTGTCCACAGCAGCCAGTAAAGGGCGCTGGACTCCCCTGGAACAGGAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACAGCAGCCAGTAAAGGGCGCTGGACTCCCCTGGAACAGGAGTT  399

seq1  ACAGATGGTTCTGAATCATCATGTAGATTTGGGGAACAGAACCAGGATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGTTCTGAATCATCATGTAGATTTGGGGAACAGAACCAGGATCC  449

seq1  TCTGCAAGAACAGTAACTGCTCTTAGCCACTGAGCCATCTCTCTGGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAGAACAGTAACTGCTCTTAGCCACTGAGCCATCTCTCTGGCCCC  499

seq1  CAAATAACTTTTTGCTTTGTTTTGTTTTTCAATAGAAGGATTCTCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAACTTTTTGCTTTGTTTTGTTTTTCAATAGAAGGATTCTCTGTGT  549

seq1  AGCCCTGTCTGTCCTAGAATTCACTCCATAGGTACCCCAGTCTGGCCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTCTGTCCTAGAATTCACTCCATAGGTACCCCAGTCTGGCCTCA  599

seq1  AAACTCAGAGTTCCATCTTCCTCTGCCTCCCAAGTACAGGGATTAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAGTTCCATCTTCCTCTGCCTCCCAAGTACAGGGATTAAAGGT  649

seq1  GCCACCACTGCCACCATCACCTGGCTCTTAGTTTGGTTTTCATTTCCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACTGCCACCATCACCTGGCTCTTAGTTTGGTTTTCATTTCCCAA  699

seq1  TAAATTAACTCTTTAAAAAGAAAAACTAAACGTATTAGCCTGGCCTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTCTTTAAAAAGAAAAACTAAACGTATTAGCCTGGCCTAATG  749

seq1  GTACATGCTTTTAGTCCCAGCACTCAGGAAGCCGAAATGGGTGGATCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCTTTTAGTCCCAGCACTCAGGAAGCCGAAATGGGTGGATCACT  799

seq1  GTGAATTC  808
      ||||||||
seq2  GTGAATTC  807