BAC Information

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BAC

Clone NameB6Ng01-188A01
Chromosome15 (Build37)
Map Location 42,666,296 - 42,667,400
singlet/doubletsinglet
Overlap genenone
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35, LOC100039288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188A01.bB6Ng01-188A01.g
ACCGA012423GA012424
length1,1721,111
definitionB6Ng01-188A01.b B6Ng01-188A01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaccagaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaactcaaaacaacccttccac
ctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatg
ctggcaaggatgtggagaaagaggaacactccttcattgttggtgggatt
gcaagcttgtacaaccactctggaaatcagtttggtggttcctcagaaaa
ttgggcataatagtaccagagaatccagcaatacctctcctgggcatata
tccagaagatgttccaaccggtaagaaggacacatgctccactatgttca
tagcagccttatttataatagccagaagctggaaagaacccagatgtccc
tcaacaaaggaatgaatacagaaaatgtggtacatttacacaatggagta
ctactcagctattagaagtaatgaacttatgaaattcctaggcaaatgga
tggacctggagggcatcatcctgagtgaggtaacacaatcacaaagaaac
tcacacaatatgtactcactgataagtggatattagcccaaaacttagga
tacccaagatataagatacaatttgttaaacgcctgaaactcaagaagaa
tgaagactgaagtgtggacactgtgccccttcttagaattgggaacaaaa
cacacatggaaagagttacagagataaagtttggagctgtgaggaaagga
tgaaccatctaaagactgccatgtccagggatccatcccataatcagcct
ccaaacgctgacaccattgtatacactagcaagattttgctgaaaggacc
cagatatagatgtctcttgtgagactatgcctgggactagcaaacacaga
agtggatgctcacagtcagctaatggatgaatcacagggcccccaatgga
ggagctagagaaagtacccaaggagctaaagggaactgcaaccctatagg
tggaacaacattatgaactaccagtaccccagagctcttgactctagttg
catattgtataaaagatgctagtgtcatcactgcaaagagagtcatctga
cctgccaaactttaattgcccagtccagggtaacgccaaggctaaagatg
tagattgctggttatgaggagt
gaattctttgaaaaaactcagggcaatgtaagctgaaggagcttacggtt
gagaaaggacacaaagcaggttctatattgagcagagactctttcggtct
gaggcagattgaggagaaatgaggtgatgggtaacgtttgtggtaaagta
aggcatttatttccgtaattataaaatcctggctacactgatttttcatt
acaataactgaatacttgtgctgggccccgcaaaaagccatttgaaaaga
caaatcaaatttgtttagtcaggatgagagcaaatactctgctaatggca
tagaaatatcaccgcaaccaagaggttaggcaagagtgaattattagtga
caggaaagttagcccttcaccaactgtctcactcctgcagagacacctgc
cactcatctgatcacaatccctaagaagtagcatttataggctaagttaa
caacctcattatggctttgcttagcatggaaattaggtcctaaaagcaat
ggatatttatatacttgttaccaatttatttgtcaaaataatggtattca
gaaagactatgagaatcgtgtgttgaataattagaaaagtatttcaattg
aaaataatgtaataacctgacacctctacacatttagcaatctctaaaga
ccttactttgtaagatcaaaaaataattaaatccaaactgtcatgataat
cataaacagttgtcctgagtagaaggagttttaaaaataggatataaaaa
tttccaaactaatctctttcactttccttattacataaaattgtctcaca
gagaaatcttccttattaggcaagctgcctgagctccttggtgtgaggag
aaatgtgcaagtgcctgtttaagctgaaaagcattgtaataactggcgat
tcaatgtgctgtatattaattgttgctaatgagtatgtccatgaaaagtt
aaattgatgggttggagaggtagcatctcagtgcagagtactttgctgat
cttttcaaagaatcaggacttgggtttcctagcacctcatactgggttgt
ttcacaactgcctatactcaggttctagacgattctaataccccttctct
gctcaatggac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_42666296_42667400
seq2: B6Ng01-188A01.g_62_1172 (reverse)

seq1  GTCCATTGAAGCCAGAAGAGGGTATTAG-ATCGTCTAGAACTGGAGTTAT  49
      |||||||||    ||||| ||||||||| ||||||||||||  ||| |||
seq2  GTCCATTGAGCAGAGAAG-GGGTATTAGAATCGTCTAGAACCTGAG-TAT  48

seq1  AGGCAGTTGTG-AACAACCCAGTATGA-GTGCTAGGAA--CCAAGTCCTG  95
      ||||||||||| ||||||||||||||| ||||||||||  ||||||||||
seq2  AGGCAGTTGTGAAACAACCCAGTATGAGGTGCTAGGAAACCCAAGTCCTG  98

seq1  A-TCTTTG-AAAGATCAGC-AAGTACTCTGCACTGAGATGCTACCTCTCC  142
      | |||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  ATTCTTTGAAAAGATCAGCAAAGTACTCTGCACTGAGATGCTACCTCTCC  148

seq1  AA-CCATCAAATTTAACTTTTCATGGACATACTCATTAGCAACAATTAAT  191
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATC-AATTTAACTTTTCATGGACATACTCATTAGCAACAATTAAT  197

seq1  ATACAGCACATTGAATCGCCAGTTATTACAATGCTTTTCAGCTTAAACAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCACATTGAATCGCCAGTTATTACAATGCTTTTCAGCTTAAACAG  247

seq1  GCACTTGCACATTTCTCCTCACACCAAGGAGCTCAGGCAGCTTGCCTAAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCACATTTCTCCTCACACCAAGGAGCTCAGGCAGCTTGCCTAAT  297

seq1  AAGGAAGATTTCTCTGTGAGACAATTTTATGTAATAAGGAAAGTGAAAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGATTTCTCTGTGAGACAATTTTATGTAATAAGGAAAGTGAAAGA  347

seq1  GATTAGTTTGGAAATTTTTATATCCTATTTTTAAAACTCCTTCTACTCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTGGAAATTTTTATATCCTATTTTTAAAACTCCTTCTACTCAG  397

seq1  GACAACTGTTTATGATTATCATGACAGTTTGGATTTAATTATTTTTTGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTGTTTATGATTATCATGACAGTTTGGATTTAATTATTTTTTGAT  447

seq1  CTTACAAAGTAAGGTCTTTAGAGATTGCTAAATGTGTAGAGGTGTCAGGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAAGTAAGGTCTTTAGAGATTGCTAAATGTGTAGAGGTGTCAGGT  497

seq1  TATTACATTATTTTCAATTGAAATACTTTTCTAATTATTCAACACACGAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATTATTTTCAATTGAAATACTTTTCTAATTATTCAACACACGAT  547

seq1  TCTCATAGTCTTTCTGAATACCATTATTTTGACAAATAAATTGGTAACAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGTCTTTCTGAATACCATTATTTTGACAAATAAATTGGTAACAA  597

seq1  GTATATAAATATCCATTGCTTTTAGGACCTAATTTCCATGCTAAGCAAAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAAATATCCATTGCTTTTAGGACCTAATTTCCATGCTAAGCAAAG  647

seq1  CCATAATGAGGTTGTTAACTTAGCCTATAAATGCTACTTCTTAGGGATTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATGAGGTTGTTAACTTAGCCTATAAATGCTACTTCTTAGGGATTG  697

seq1  TGATCAGATGAGTGGCAGGTGTCTCTGCAGGAGTGAGACAGTTGGTGAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGATGAGTGGCAGGTGTCTCTGCAGGAGTGAGACAGTTGGTGAAG  747

seq1  GGCTAACTTTCCTGTCACTAATAATTCACTCTTGCCTAACCTCTTGGTTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTTCCTGTCACTAATAATTCACTCTTGCCTAACCTCTTGGTTG  797

seq1  CGGTGATATTTCTATGCCATTAGCAGAGTATTTGCTCTCATCCTGACTAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGATATTTCTATGCCATTAGCAGAGTATTTGCTCTCATCCTGACTAA  847

seq1  ACAAATTTGATTTGTCTTTTCAAATGGCTTTTTGCGGGGCCCAGCACAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTGATTTGTCTTTTCAAATGGCTTTTTGCGGGGCCCAGCACAAG  897

seq1  TATTCAGTTATTGTAATGAAAAATCAGTGTAGCCAGGATTTTATAATTAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGTTATTGTAATGAAAAATCAGTGTAGCCAGGATTTTATAATTAC  947

seq1  GGAAATAAATGCCTTACTTTACCACAAACGTTACCCATCACCTCATTTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATGCCTTACTTTACCACAAACGTTACCCATCACCTCATTTCT  997

seq1  CCTCAATCTGCCTCAGACCGAAAGAGTCTCTGCTCAATATAGAACCTGCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCTGCCTCAGACCGAAAGAGTCTCTGCTCAATATAGAACCTGCT  1047

seq1  TTGTGTCCTTTCTCAACCGTAAGCTCCTTCAGCTTACATTGCCCTGAGTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCTTTCTCAACCGTAAGCTCCTTCAGCTTACATTGCCCTGAGTT  1097

seq1  TTTTCAAAGAATTC  1105
      ||||||||||||||
seq2  TTTTCAAAGAATTC  1111