BAC Information

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BAC

Clone NameB6Ng01-188A09
Chromosome15 (Build37)
Map Location 28,633,258 - 28,634,445
singlet/doubletsinglet
Overlap geneLOC100040702
Upstream geneTrio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
Downstream geneLOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188A09.bB6Ng01-188A09.g
ACCGA012439GA012440
length1,1881,195
definitionB6Ng01-188A09.b B6Ng01-188A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gggaattcactctaggaaaagagacagatatgaatctggtgaggctcaac
atatttagaacaccataatttacatgacaagggaggattgtactgggcgt
ctagcctatcccaaagctctccttcctactcctgagaatgatatcttttg
cagtttaaagcaaagtacttctctcagctgaaggaaacatctaagtttat
atatgccttttccagaagttgctctctaatgactgccgcagcgtctttcc
cttaatatgcctaaaaccacaattacttagttcatatctagccacagggt
cagttgagggctctattgtaatttgacctcagtttgatacctttttctgc
ccatccttattgctttctctccttcacagaggttgctatagacttctaat
taatacactttcttcatgaagatctgtatatctgagtctgttccccagag
cctccatgaatgctaataatttgttctctctatattgttattacttgttt
tttatgatacctcattagtattatttatatttaatctcatagctaataaa
tacttcattaggttattcaaaatatgtaagtttgtttaaaatcaagcttg
aaaaatgcatagtcttctataatttatatcttctactatattgtacattt
tgattccaaacttcccattagatcactggttaatcttcagggagacattt
tatctaatttgtgcttttctgaagaactataatttattatagtaccatta
tgttatctattaagattatctatcattttctaataaatgtaggattcaag
ttccttcaattttatcccatgaagcagatttttaaaattcaagttactct
tctggttcagtgcagtttcattaaacacataaatcaaaaacgtcctcata
caggatagaacaagatcaggattcaagtaagttactcaaatattactctt
ggcagctttgacaggttttctatctattgtcttccaatgctacaacggcc
atatctataccccaggctaataaattatgtctttctgtctgtctatccag
ccaatagaatacattggacatctcatgtcatagaagaatattgagtgtga
ctcctaaaccatgagggtggcaactcctagaattattaagtgataataac
ttataggagcgattttctccgtttctcagtcatatcta

gaattctctaactctgtaccccattttttaattgggttatttgggttgtc
agtgtccaacttcttgagttctttataaagtttggatattagacctgtgt
caaatgtagggttggtgaagattctttttcaacctgtagtcttcaatttt
ttcctattgacagtgtcctgtgctttagggaattgtttcagtttcatgag
atcccatttatcagttattcaccttaaagcctgagctattggtattctgt
tcaggaagttgtcttctgtacgaaacagttcccacttcctattctattag
acttattgtatctggttttacactgctgactttggtccacttggacttta
gttttgtgcagggtgatagatatggatctgctccacgaagatagccagtt
agaccagcattatttgctcaatatgctttcttttttctgttgtatgtttt
tgacttcttagtcaaaaatcaagtgtccataggtggatggatttatttct
gggtcttcaggtctattccattgattgacctgctgtctctgtaccaatac
cacgtggttgtaatgactatttctctgtaatatggcttgaggttagagat
ggtgataactaactccagaaattctttttctgttcaggattgtttttgct
atcctgagattattgctttcccatacgaagttgagaatttctctcagtgt
ctgtaaagaattgtgttggaattttgatggaaattgcattgaatctataa
attgctctgttaagatagccattttcactatcttaatcctatggatccat
gagcatgggagacctatcttctgacgtcttcctcaatttccctctttaga
gacgtgatgttttcatcatgcaggtctttcatttgtttggttagagttca
accaagatattttattcatgactactagaaagggtattgttttcctaatt
tctttctcagtatgtttatcatttatataaagaagggttactgatttttt
tatagttattctgtatccagcactttgatgaaggtgtttgtcagctgtag
agttttctggatgattttggattattttgtataggtcatatcatatctgt
aatatgatacttggacctctcgttccatctgaatccctttggaatctccc
tcagagctgtgcctaattctcctgaggactcagagagaacactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28633258_28634445
seq2: B6Ng01-188A09.b_48_1233

seq1  GAATTCACTCTAGGAAAAGAGACAGATATGAATCTGGTGAGGCTCAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGGAAAAGAGACAGATATGAATCTGGTGAGGCTCAACAT  50

seq1  ATTTAGAACACCATAATTTACATGACAAGGGAGGATTGTACTGGGCGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAACACCATAATTTACATGACAAGGGAGGATTGTACTGGGCGTCT  100

seq1  AGCCTATCCCAAAGCTCTCCTTCCTACTCCTGAGAATGATATCTTTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATCCCAAAGCTCTCCTTCCTACTCCTGAGAATGATATCTTTTGCA  150

seq1  GTTTAAAGCAAAGTACTTCTCTCAGCTGAAGGAAACATCTAAGTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGCAAAGTACTTCTCTCAGCTGAAGGAAACATCTAAGTTTATAT  200

seq1  ATGCCTTTTCCAGAAGTTGCTCTCTAATGACTGCCGCAGCGTCTTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTCCAGAAGTTGCTCTCTAATGACTGCCGCAGCGTCTTTCCCT  250

seq1  TAATATGCCTAAAACCACAATTACTTAGTTCATATCTAGCCACAGGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGCCTAAAACCACAATTACTTAGTTCATATCTAGCCACAGGGTCA  300

seq1  GTTGAGGGCTCTATTGTAATTTGACCTCAGTTTGATACCTTTTTCTGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGCTCTATTGTAATTTGACCTCAGTTTGATACCTTTTTCTGCCC  350

seq1  ATCCTTATTGCTTTCTCTCCTTCACAGAGGTTGCTATAGACTTCTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTATTGCTTTCTCTCCTTCACAGAGGTTGCTATAGACTTCTAATTA  400

seq1  ATACACTTTCTTCATGAAGATCTGTATATCTGAGTCTGTTCCCCAGAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTTCTTCATGAAGATCTGTATATCTGAGTCTGTTCCCCAGAGCC  450

seq1  TCCATGAATGCTAATAATTTGTTCTCTCTATATTGTTATTACTTGTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAATGCTAATAATTTGTTCTCTCTATATTGTTATTACTTGTTTTT  500

seq1  TATGATACCTCATTAGTATTATTTATATTTAATCTCATAGCTAATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATACCTCATTAGTATTATTTATATTTAATCTCATAGCTAATAAATA  550

seq1  CTTCATTAGGTTATTCAAAATATGTAAGTTTGTTTAAAATCAAGCTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTAGGTTATTCAAAATATGTAAGTTTGTTTAAAATCAAGCTTGAA  600

seq1  AAATGCATAGTCTTCTATAATTTATATCTTCTACTATATTGTACATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATAGTCTTCTATAATTTATATCTTCTACTATATTGTACATTTTG  650

seq1  ATTCCAAACTTCCCATTAGATCACTGGTTAATCTTCAGGGAGACATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAAACTTCCCATTAGATCACTGGTTAATCTTCAGGGAGACATTTTA  700

seq1  TCTAATTTGTGCTTTTCTGAAGAACTATAATTTATTATAGTACCATTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTGTGCTTTTCTGAAGAACTATAATTTATTATAGTACCATTATG  750

seq1  TTATCTATTAAGATTATCTATCATTTTCTAATAAATGTAGGATTCAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTAAGATTATCTATCATTTTCTAATAAATGTAGGATTCAAGTT  800

seq1  CCTTCAATTTTATCCCATGAAGCAGATTTTTAAAATTCAAGTTACTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAATTTTATCCCATGAAGCAGATTTTTAAAATTCAAGTTACTCTTC  850

seq1  TGGTTCAGTGCAGGTTTCATTAAACACATAAATCAAAAACGTCCTCATAC  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTGCA-GTTTCATTAAACACATAAATCAAAAACGTCCTCATAC  899

seq1  AGGATAGAACAAGATCAGGATTCAAGTAAGTTACTCAAATATTACTCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAACAAGATCAGGATTCAAGTAAGTTACTCAAATATTACTCTTG  949

seq1  GCAGCTTTGACAGGTTTTCTATCTATTGTCTTCCAAATGCTACAACGGCC  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCAGCTTTGACAGGTTTTCTATCTATTGTCTTCC-AATGCTACAACGGCC  998

seq1  ATATCTATACCCCAGGCTAATAAATTATGTCTTTCTGTCTGTCTATCCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATACCCCAGGCTAATAAATTATGTCTTTCTGTCTGTCTATCCAG  1048

seq1  CCAATTAAGATACATTGGACATCTCATGTCATAGAAGAATATTGAGTGTG  1100
      |||| ||  |||||||||||||||||||||||||||||||||||||||||
seq2  CCAA-TAGAATACATTGGACATCTCATGTCATAGAAGAATATTGAGTGTG  1097

seq1  ACTCCTAAACACATGAGGGTGGC-ACT-CTAG-ATTATT-AGTGATAATA  1146
      |||||||||| |||||||||||| ||| |||| |||||| ||||||||||
seq2  ACTCCTAAAC-CATGAGGGTGGCAACTCCTAGAATTATTAAGTGATAATA  1146

seq1  ATTTATAAGGAGCGA-TTTCTCCTGTTTCTCAGTCATTATCTA  1188
      | |||| |||||||| ||||||| |||||||||||| ||||||
seq2  ACTTAT-AGGAGCGATTTTCTCC-GTTTCTCAGTCA-TATCTA  1186


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