BAC Information

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BAC

Clone NameB6Ng01-188C12
Chromosome15 (Build37)
Map Location 50,845,386 - 51,024,828
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188C12.bB6Ng01-188C12.g
ACCGA012537GA012538
length1,1611,138
definitionB6Ng01-188C12.b B6Ng01-188C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,845,386 - 50,846,169)(51,023,686 - 51,024,828)
sequence
gaattccatagtgtgtcccttacagtggaatgaagtattaaaatattagc
atataaacttttaaaatgtatacaatttatatactgaaggtcataaaata
taaaggaaaaaaaaacacaatcagggattagatagtttaatgttctcaag
acatcaaaacttaccagatttcttataggttttccataatcaaaaataaa
atactggtgaaatttctatatggattgaacaggcatttaaaatgtacatg
ggagagcgaaagagctataagaaccaaaaagtttgaatgaaaaagaagtc
ctgtatgctggagctgactgaatgcctccctctggagagtagcttttgtg
acatcagaaagcactaatgcaagcttccaaagaagacctacccagccaac
cagctttgccgcctacgaaccacatctgtgaccagcatagttccatagcc
ttagaggcacggtatcttggctgtaaccaccttccctctagttggactta
acacccacgaaacaagagggataccatacctggtactgaaaacctagcta
attattcaatgctagtgaagtcatgcttactggtgagaatctacaaccac
taaatcactaaagcaacataatccctaacaatacgctataaacattcgtc
cttacgcctacagataagtatagtcttcatccttcatcaaggaaacttct
caatgcaagagacaccaccagagaaaaacacaaccaatcaatatgcaaag
ctgcggagttcaatctagcagatatatttaaaaaacattcccacacctaa
ggttcagaaagcattacaaaaggggggtggaaagagtataagaaccaggg
acttcattgtgagattgtgtgtctttataacaaaatgatgtaaccataaa
aacaacagtagtggtaatgtgtagacatctagttcagaggaatagactag
aatggtgcagaagtcagcacaggggtggtggccagcatttttgttttcat
tgataatgatacaaatagaaagaaacatctttctttaaatgatgtcagaa
taactgaacattgaagatataaaaatattattaaggtactaagtggccag
aatactgcacaaaaaaaaccccctaataacagccaccatccacaaccaaa
ctcagcaaaat

gaattcatttagcagtggaaaggggaaacgtgtaaaggaacgtgtgaacc
ctagttgaattaaggagcatgtcttagctatacgttttactttattggga
gtcaaatactttccccaccatcttcataggaatgttcaagaatatttaca
atatgtcattgtagtcaatgaaaagaaaaaaaaaggtgatttcgtcaaaa
tcaaatctttccaatagttgcaaaggaagttgcttcacgctcagcccaga
ggtaataatttctctgtacagaacattattttttttacctgacttgtgat
tttgctgatgtttgtccactcatagaagtcatagtaaatatgaaacacac
tccataaaaatttattacatgctcagaatatagcttgtttcaatatcaga
agaaatacagtacaaataagaaaatatggacatagtaaaataatcctgat
gtgggttttttggtttgcattttttaatataaagctaacactttaactac
ctcattctttgaataatcatttctgaattaaagcaggttttaatttaaca
aggacagtccactctcccacataatatttcttcagttaaattgtcctctt
aggactcatatattgatattggaacagtattttcccatttcctttcatgg
gacctgtctttttaaaaaaataaggctcaagtattctgaaagaatgtatg
agcaatttcagttttatttctaaaatcattttgaatggagacatttatgc
tagacactgtggtagtgaatacagtttggtcccatcatgaattttttatc
ctagtttctatatttcttactgtagggaggaatcatttttcatctgcaca
gtttttcactcaatatttcagcaacacctacaacagggagatcaacttcc
tgagtgaggcagagatggattgttaaacactgaaataccctcctgtcaga
atggcttggcactcagagagtacattctccatccttgtctcttgattaat
ttccgtaaaaattgcgattacatcattagagtgtttttgtatcatattga
ttagtagaattgtagtcaactaagtttcttcacctgaaggactcacacag
gagcgatgagataagctttgtgcaaggaagagttgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50845386_50846169
seq2: B6Ng01-188C12.b_422_1207

seq1  TCCAAAGAAGACCTACCCAGCCAACCAGCTTTGCCGCCTACGAACCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAGACCTACCCAGCCAACCAGCTTTGCCGCCTACGAACCACAT  50

seq1  CTGTGACCAGCATAGTTCCATAGCCTTAGAGGCACGGTATCTTGGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCAGCATAGTTCCATAGCCTTAGAGGCACGGTATCTTGGCTGTA  100

seq1  ACCACCTTCCCTCTAGTTGGACTTAACACCCACGAAACAAGAGGGATACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTCCCTCTAGTTGGACTTAACACCCACGAAACAAGAGGGATACC  150

seq1  ATACCTGGTACTGAAAACCTAGCTAATTATTCAATGCTAGTGAAGTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTGGTACTGAAAACCTAGCTAATTATTCAATGCTAGTGAAGTCATG  200

seq1  CTTACTGGTGAGAATCTACAACCACTAAATCACTAAAGCAACATAATCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGTGAGAATCTACAACCACTAAATCACTAAAGCAACATAATCCC  250

seq1  TAACAATACGCTATAAACATTCGTCCTTACGCCTACAGATAAGTATAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATACGCTATAAACATTCGTCCTTACGCCTACAGATAAGTATAGTC  300

seq1  TTCATCCTTCATCAAGGAAACTTCTCAATGCAAGAGACACCACCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTTCATCAAGGAAACTTCTCAATGCAAGAGACACCACCAGAGAA  350

seq1  AAACACAACCAATCAATATGCAAAGCTGCGGAGTTCAATCTAGCAGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAACCAATCAATATGCAAAGCTGCGGAGTTCAATCTAGCAGATAT  400

seq1  ATTTAAAAAACATTCCCACACCTAAGGTTCAGAAAGCATTACAAAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAACATTCCCACACCTAAGGTTCAGAAAGCATTACAAAAGGGG  450

seq1  GGTGGAAAGAGTATAAGAACCAGGGACTTCATTGTGAGATTGTGTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAGAGTATAAGAACCAGGGACTTCATTGTGAGATTGTGTGTCTT  500

seq1  TATAACAAAATGATGTAACCATAAAAACAACAGTAGTGGTAATGTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAAATGATGTAACCATAAAAACAACAGTAGTGGTAATGTGTAGA  550

seq1  CATCTAGTTCAGAGGAATAGACTAGAATGGTGCAGAAGTCAGCACAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTTCAGAGGAATAGACTAGAATGGTGCAGAAGTCAGCACAGGGG  600

seq1  T-GTGGCCAGCA-TTTTGTTTTCATTGATAATGATACAAAATAGAAAGAA  648
      | |||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TGGTGGCCAGCATTTTTGTTTTCATTGATAATGATAC-AAATAGAAAGAA  649

seq1  ACATCTTTCTTTAAATGATGTCAGAATAACTGACAATTG-AGATAT-AAA  696
      |||||||||||||||||||||||||||||||||  |||| |||||| |||
seq2  ACATCTTTCTTTAAATGATGTCAGAATAACTGAACATTGAAGATATAAAA  699

seq1  ATATTA-TAAGGTACTAAAGTGGCCCAGAATACTGCACAAAAAAAAACCC  745
      |||||| ||||||||| |||||| |||||||||||||||||||||| |||
seq2  ATATTATTAAGGTACT-AAGTGG-CCAGAATACTGCACAAAAAAAACCCC  747

seq1  CTAATAACAG-CAACATCAACAACAAAAACTCAGCAAAAT  784
      |||||||||| || |||| |||||  ||||||||||||||
seq2  CTAATAACAGCCACCATCCACAAC-CAAACTCAGCAAAAT  786


seq1: chr15_51023686_51024828
seq2: B6Ng01-188C12.g_63_1200 (reverse)

seq1  GCTCTAACTCTTCCTT-CCCACAGCTAATCTCATCGCTCCCTGTGTGAGT  49
      |||| ||||||||||| | || |||| ||||||||||| |||||||||||
seq2  GCTC-AACTCTTCCTTGCACAAAGCTTATCTCATCGCT-CCTGTGTGAGT  48

seq1  CCTTCAGGTGAAGAAACTTTAGTTGACTACAATTTCCTACTAATCAATAT  99
      ||||||||||||||||| ||||||||||||||||  ||||||||||||| 
seq2  CCTTCAGGTGAAGAAAC-TTAGTTGACTACAATT--CTACTAATCAATA-  94

seq1  TGATAC-AAAACACTCTAATGATGTAATCGCAATTTTTTACGGAAATTAA  148
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TGATACAAAAACACTCTAATGATGTAATCGCAA-TTTTTACGGAAATTAA  143

seq1  TCAAGAGACCAGGATGGAGAATGTACTCTCTGAGTGCCAAGCCATTCTGA  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGACAAGGATGGAGAATGTACTCTCTGAGTGCCAAGCCATTCTGA  193

seq1  CAGGAGGGTATTTCAGTGTTTAACAATCCATCTCTGCCTCACTCAGGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGGTATTTCAGTGTTTAACAATCCATCTCTGCCTCACTCAGGAAG  243

seq1  TTGATCTCCCTGTTGTAGGTGTTGCTGAAATATTGAGTGAAAAACTGTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCCCTGTTGTAGGTGTTGCTGAAATATTGAGTGAAAAACTGTGC  293

seq1  AGATGAAAAATGATTCCTCCCTACAGTAAGAAATATAGAAACTAGGATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAAATGATTCCTCCCTACAGTAAGAAATATAGAAACTAGGATAA  343

seq1  AAAATTCATGATGGGACCAAACTGTATTCACTACCACAGTGTCTAGCATA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATGATGGGACCAAACTGTATTCACTACCACAGTGTCTAGCATA  393

seq1  AATGTCTCCATTCAAAATGATTTTAGAAATAAAACTGAAATTGCTCATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCATTCAAAATGATTTTAGAAATAAAACTGAAATTGCTCATAC  443

seq1  ATTCTTTCAGAATACTTGAGCCTTATTTTTTTAAAAAGACAGGTCCCATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCAGAATACTTGAGCCTTATTTTTTTAAAAAGACAGGTCCCATG  493

seq1  AAAGGAAATGGGAAAATACTGTTCCAATATCAATATATGAGTCCTAAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGGGAAAATACTGTTCCAATATCAATATATGAGTCCTAAGAG  543

seq1  GACAATTTAACTGAAGAAATATTATGTGGGAGAGTGGACTGTCCTTGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTTAACTGAAGAAATATTATGTGGGAGAGTGGACTGTCCTTGTTA  593

seq1  AATTAAAACCTGCTTTAATTCAGAAATGATTATTCAAAGAATGAGGTAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACCTGCTTTAATTCAGAAATGATTATTCAAAGAATGAGGTAGT  643

seq1  TAAAGTGTTAGCTTTATATTAAAAAATGCAAACCAAAAAACCCACATCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGTTAGCTTTATATTAAAAAATGCAAACCAAAAAACCCACATCAG  693

seq1  GATTATTTTACTATGTCCATATTTTCTTATTTGTACTGTATTTCTTCTGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTTACTATGTCCATATTTTCTTATTTGTACTGTATTTCTTCTGA  743

seq1  TATTGAAACAAGCTATATTCTGAGCATGTAATAAATTTTTATGGAGTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACAAGCTATATTCTGAGCATGTAATAAATTTTTATGGAGTGTG  793

seq1  TTTCATATTTACTATGACTTCTATGAGTGGACAAACATCAGCAAAATCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTACTATGACTTCTATGAGTGGACAAACATCAGCAAAATCAC  843

seq1  AAGTCAGGTAAAAAAAATAATGTTCTGTACAGAGAAATTATTACCTCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGTAAAAAAAATAATGTTCTGTACAGAGAAATTATTACCTCTGG  893

seq1  GCTGAGCGTGAAGCAACTTCCTTTGCAACTATTGGAAAGATTTGATTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCGTGAAGCAACTTCCTTTGCAACTATTGGAAAGATTTGATTTTG  943

seq1  ACGAAATCACCTTTTTTTTTCTTTTCATTGACTACAATGACATATTGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATCACCTTTTTTTTTCTTTTCATTGACTACAATGACATATTGTAA  993

seq1  ATATTCTTGAACATTCCTATGAAGATGGTGGGGAAAGTATTTGACTCCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGAACATTCCTATGAAGATGGTGGGGAAAGTATTTGACTCCCA  1043

seq1  ATAAAGTAAAACGTATAGCTAAGACATGCTCCTTAATTCAACTAGGGTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTAAAACGTATAGCTAAGACATGCTCCTTAATTCAACTAGGGTTC  1093

seq1  ACACGTTCCTTTACACGTTTCCCCTTTCCACTGCTAAATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTCCTTTACACGTTTCCCCTTTCCACTGCTAAATGAATTC  1138


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