BAC Information

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BAC

Clone NameB6Ng01-188E08
Chromosome2 (Build37)15 (Build37)
Map Location 181,371,971 - 181,372,07681,095,273 - 81,096,387
singlet/doubletsingletsinglet
Overlap genePrpf6
Upstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10
Downstream geneLOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E08.bB6Ng01-188E08.g
ACCGA012612GA012613
length7461,133
definitionB6Ng01-188E08.b B6Ng01-188E08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(181,371,971 - 181,372,076)(81,095,273 - 81,096,387)
sequence
gaattctttgataatgacaggcatgtattggtctgccttacattgcatag
ttgagctacatttgttgagattccacagagagaaacacaccaaaaaactt
ctagggtgtgctgcagtttcttgttgcctctttggacttgggctgattgg
cagtttgatgtcagctgagacagatgcacgtcctgagacaagactcaccc
atgaaggacacgtgatgtttggagggatataaatagaactcaatgtacag
tgttggaggctgagcttggcttgtttataggtgtgcaatgcttgtgggtc
tagagacttcactgatcttcgcttcactgagagagacacagcctagaact
tctgatgttcctcctggtccctcctgatacctgcagagactggggcctgg
ctgtctccactaagtagtaccatggctgctgatttgtttgctatcctgac
tctaccaaactggattgttagtgtattagtgaagtggatgaagctgccac
tgctggcttgtgaactgaactgccaatttccagacaacacagatgggact
tgcttcaaaaaactttttcctttctttctttctttctttctttctttctt
ccttcctttcttcctttcttttctttcttcctttcttttctttcttcctt
ttttaagatttatttatttattatatggaagtacactgtagctgtctttc
agacaccccagaagagggcatcaagtctcattacaggtggttgtga
gaattctttgctccttctgctctgctctgtctcgccatgtgccacctcag
cgtgccttcggcacctgcacttttcttcccctttatcccagctcttgtaa
taggtttttcagtctgtgggattccagatcagtgtttcccttaaccttgt
atgtggcaggaagcattagggtggagcggaagttatcagaaactagcacc
ccacccccaccccctgggcaggctgcaccgggtaccaaaggatcctacaa
aagatggagggaagcgggcactgggtgttccacttcacctgggcagaaga
aaggtccaattcatctccatggacattgctacgtattcatggtttactca
tgcactgggatgggggtaggggacattttcatgcacatatatatttctac
ctgctccgttatacaaatgtttgaggtggcttacaaatatatatatatat
atatatatatatatataatatcaaggaatgaaataggtatcattagaaac
gggaagaggaattcagaggagggaaataacgaagctcataaccatgcagt
aagctgccctgcacagttgttaaatgtgatccataaacttggctttggaa
accccagcaattccaaagcaaaacacgaacattcgaacacaggaaatgta
gaatacataaacgaaaaaaaaactgtagtgtcacgggggaagcaccatct
tgcctttgtattgaaatttgggaggaattctttcatgggtccatccaaag
atgaccaatagataaaacaaaccattgctcattagacttcttaggttgag
tcaagtttgctaaaatgtcattcaaggtccttaatatattatgtataata
ctaagaaattaggaatagtatagatgtccctcaatacattattggacaaa
ttgtcccgatgggagtgttaggcagttaataaggggaaagatgaacaatt
ttagggttgctcatggtgaaaccagtttccaggatgtatctagaaatgaa
tgaagttgggaagtgcagaatgaattgtctcctataagggaagtgtctgt
gaaatgaaataaaagtcatatgtacttccaatgtgtggcatctcttggtc
ctttcctcagggagaaagggtcacaagaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_181371971_181372076
seq2: B6Ng01-188E08.b_696_793

seq1  TTTTTTAAGATTTATTTATTTATTTTTATTATATGTAAGTACATTGTAGC  50
      ||||||||||||||||||      ||||||||||| ||||||| ||||||
seq2  TTTTTTAAGATTTATTTA------TTTATTATATGGAAGTACACTGTAGC  44

seq1  TGTCTTT-AGTCACCCCAGAAGAGGGAGTCAGATCTCATCATTACAGATG  99
      ||||||| || |||||||||||||||  |||  ||   ||||||||| ||
seq2  TGTCTTTCAGACACCCCAGAAGAGGGCATCAAGTC---TCATTACAGGTG  91

seq1  GTTGTGA  106
      |||||||
seq2  GTTGTGA  98

seq1: chr15_81095273_81096387
seq2: B6Ng01-188E08.g_69_1201

seq1  GAATTCTTTGCTCCTTCTGCTCTGCTCTGTCTCGCCATGTGCCACCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTCCTTCTGCTCTGCTCTGTCTCGCCATGTGCCACCTCAG  50

seq1  CGTGCCTTCGGCACCTGCACTTTTCTTCCCCTTTATCCCAGCTCTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTTCGGCACCTGCACTTTTCTTCCCCTTTATCCCAGCTCTTGTAA  100

seq1  TAGGTTTTTCAGTCTGTGGGATTCCAGATCAGTGTTTCCCTTAACCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTCAGTCTGTGGGATTCCAGATCAGTGTTTCCCTTAACCTTGT  150

seq1  ATGTGGCAGGAAGCATTAGGGTGGAGCGGAAGTTATCAGAAACTAGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAGGAAGCATTAGGGTGGAGCGGAAGTTATCAGAAACTAGCACC  200

seq1  CCACCCCCACCCCCTGGGCAGGCTGCACCGGGTACCAAAGGATCCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCCTGGGCAGGCTGCACCGGGTACCAAAGGATCCTACAA  250

seq1  AAGATGGAGGGAAGCGGGCACTGGGTGTTCCACTTCACCTGGGCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGAGGGAAGCGGGCACTGGGTGTTCCACTTCACCTGGGCAGAAGA  300

seq1  AAGGTCCAATTCATCTCCATGGACATTGCTACGTATTCATGGTTTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCAATTCATCTCCATGGACATTGCTACGTATTCATGGTTTACTCA  350

seq1  TGCACTGGGATGGGGGTAGGGGACATTTTCATGCACATATATATTTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGGGATGGGGGTAGGGGACATTTTCATGCACATATATATTTCTAC  400

seq1  CTGCTCCGTTATACAAATGTTTGAGGTGGCTTACAAATATATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCGTTATACAAATGTTTGAGGTGGCTTACAAATATATATATATAT  450

seq1  ATATATATATATATATAATATCAAGGAATGAAATAGGTATCATTAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATAATATCAAGGAATGAAATAGGTATCATTAGAAAC  500

seq1  GGGAAGAGGAATTCAGAGGAGGGAAATAACGAAGCTCATAACCATGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGGAATTCAGAGGAGGGAAATAACGAAGCTCATAACCATGCAGT  550

seq1  AAGCTGCCCTGCACAGTTGTT-AATGTGATCCATAAACTTGGCTTTGGAA  599
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGCTGCCCTGCACAGTTGTTAAATGTGATCCATAAACTTGGCTTTGGAA  600

seq1  ACCCCAGCAA-TCCAAAGCAAAACACGAACATTCGAACACAGGAAATGTA  648
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCAATTCCAAAGCAAAACACGAACATTCGAACACAGGAAATGTA  650

seq1  GAATACATAAACGAAAAAAAAACTGTAGTGTCACGGGGGAAGCACCATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATAAACGAAAAAAAAACTGTAGTGTCACGGGGGAAGCACCATCT  700

seq1  TGCCTTTGTATTGAAATTTGGGAGGAATTCTTTCATGGGTCCATCCAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGTATTGAAATTTGGGAGGAATTCTTTCATGGGTCCATCCAAAG  750

seq1  ATGACCAATAGATAAAAC-AACCATTGCTCATTAGACTTCTTAGGTTGAG  797
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGACCAATAGATAAAACAAACCATTGCTCATTAGACTTCTTAGGTTGAG  800

seq1  TCAAG-TTGCTAAAATGTCATTCAAGGTCCTAATAATATTATGTATAATA  846
      ||||| ||||||||||||||||||||||||| |  |||||||||||||||
seq2  TCAAGTTTGCTAAAATGTCATTCAAGGTCCTTAATATATTATGTATAATA  850

seq1  CT-AGAAATTAGGAATAGTATAGATGTCCCTCAAATACATTATTGGACAA  895
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAAGAAATTAGGAATAGTATAGATGTCCCTC-AATACATTATTGGACAA  899

seq1  A-TGT-CCGAT-GGAGTGTTAGGCAGTTATTAAGGGGAAAGATGAACAAT  942
      | ||| ||||| ||||||||||||||||| ||||||||||||||||||||
seq2  ATTGTCCCGATGGGAGTGTTAGGCAGTTAATAAGGGGAAAGATGAACAAT  949

seq1  TT--AGGTTGCTCAT-GTGAAA-CAGTTTCCAAGATGTA-CTAGGAAATG  987
      ||   |||||||||| |||||| ||||||||| |||||| ||| ||||||
seq2  TTTAGGGTTGCTCATGGTGAAACCAGTTTCCAGGATGTATCTA-GAAATG  998

seq1  AAAGAAGTTGG--AG-GCAGAA-GAA-TGTCT-CTATAAGGGAAGTGTCT  1031
      || ||||||||  || |||||| ||| ||||| |||||||||||||||||
seq2  AATGAAGTTGGGAAGTGCAGAATGAATTGTCTCCTATAAGGGAAGTGTCT  1048

seq1  GTGAAAATGAAATAAAAGTCATATGTACTTCCAAATGTTGTGCATGTCCT  1081
      ||| |||||||||||||||||||||||||||| |||||   |||| | ||
seq2  GTG-AAATGAAATAAAAGTCATATGTACTTCC-AATGTGTGGCATCT-CT  1095

seq1  TGGTCCTT--CTCA-GGAG-AGGGGTCACAAGAAACAC  1115
      ||||||||  |||| |||| | ||||||||||||||||
seq2  TGGTCCTTTCCTCAGGGAGAAAGGGTCACAAGAAACAC  1133